FFCP PHASE1:Hg19::chr3:18465604..18465618,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:18465604..18465618,-
|short_description=p9@SATB1
|description=CAGE_peak_9_at_SATB1_5end
|association_with_transcript=446bp_to_ENST00000417717_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6304 | |EntrezGene=6304 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10541 | |HGNC=10541 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=446bp_to_ENST00000417717_5end | |||
|cluster_id=chr3:18465604..18465618,- | |||
|description=CAGE_peak_9_at_SATB1_5end | |||
|id=chr3:18465604..18465618,- | |||
|ontology_enrichment_celltype=CL:0002087!3.65e-09!119;CL:0000037!5.13e-09!172;CL:0000566!5.13e-09!172;CL:0000738!5.84e-09!140;CL:0002031!1.64e-08!124;CL:0000084!4.27e-08!25;CL:0000827!4.27e-08!25;CL:0002032!5.38e-08!165;CL:0000837!5.38e-08!165;CL:0000988!6.99e-08!182;CL:0000791!2.62e-07!18;CL:0000789!2.62e-07!18;CL:0002420!2.62e-07!18;CL:0002419!2.62e-07!18;CL:0000790!2.62e-07!18 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.03e-30!115;UBERON:0001049!1.48e-13!57;UBERON:0005068!1.48e-13!57;UBERON:0006241!1.48e-13!57;UBERON:0007135!1.48e-13!57;UBERON:0002780!9.86e-13!41;UBERON:0001890!9.86e-13!41;UBERON:0006240!9.86e-13!41;UBERON:0003080!4.71e-12!42;UBERON:0002616!7.81e-12!59;UBERON:0002020!1.53e-10!34;UBERON:0003528!1.53e-10!34;UBERON:0001893!2.92e-10!34;UBERON:0005743!6.07e-10!86;UBERON:0000073!7.39e-10!94;UBERON:0001016!7.39e-10!94;UBERON:0001869!8.46e-10!32;UBERON:0002791!8.60e-10!33;UBERON:0000955!1.02e-09!69;UBERON:0006238!1.02e-09!69;UBERON:0001017!1.58e-09!82;UBERON:0002619!1.70e-09!22;UBERON:0000956!2.53e-08!25;UBERON:0000203!2.53e-08!25;UBERON:0001950!2.57e-08!20;UBERON:0003075!3.26e-08!86;UBERON:0007284!3.26e-08!86;UBERON:0002346!5.68e-08!90;UBERON:0002390!3.95e-07!102;UBERON:0003061!3.95e-07!102 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;1.57e-15;22!UBERON:0000956;3.02e-13;25!UBERON:0000203;3.02e-13;25!UBERON:0001950;7.46e-13;20!UBERON:0002021;5.01e-10;5!UBERON:0001869;6.67e-10;32!UBERON:0003528;2.31e-09;34!UBERON:0002020;2.31e-09;34!UBERON:0002780;6.09e-09;41!UBERON:0001890;6.09e-09;41!UBERON:0001893;8.39e-09;34!UBERON:0002791;3.10e-08;32!UBERON:0000200;1.10e-07;6!UBERON:0006947;2.21e-07;3!UBERON:0004054;2.21e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.30e-22,114;UBERON:0002619,2.18e-15,22;UBERON:0000956,4.00e-13,25;UBERON:0000203,4.00e-13,25;UBERON:0002780,7.35e-13,41;UBERON:0001890,7.35e-13,41;UBERON:0003080,7.35e-13,41;UBERON:0006240,7.35e-13,41;UBERON:0001950,1.04e-12,20;UBERON:0001049,2.41e-12,56;UBERON:0005068,2.41e-12,56;UBERON:0006241,2.41e-12,56;UBERON:0007135,2.41e-12,56;UBERON:0000073,4.91e-12,53;UBERON:0002616,4.91e-12,53;UBERON:0003528,3.21e-11,34;UBERON:0002020,3.21e-11,34;UBERON:0001869,8.07e-11,32;UBERON:0002021,5.62e-10,5;UBERON:0001893,5.87e-10,34;UBERON:0002791,1.76e-09,32;UBERON:0001017,5.00e-09,81;UBERON:0000955,7.25e-09,68;UBERON:0006238,7.25e-09,68;UBERON:0001016,3.75e-08,89;UBERON:0006947,1.77e-07,3;UBERON:0004054,1.77e-07,3;UBERON:0000200,2.05e-07,6;UBERON:0002346,2.53e-07,86;UBERON:0003075,2.82e-07,82;UBERON:0007284,2.82e-07,82;UBERON:0003056,5.21e-07,61 | |||
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| ||
|short_description=p9@SATB1 | |||
}} | }} |
Latest revision as of 03:01, 17 September 2015
Short description: | p9@SATB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_SATB1_5end |
Coexpression cluster: | NA |
Association with transcript: | 446bp_to_ENST00000417717_5end |
EntrezGene: | SATB1 |
HGNC: | 10541 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.30e-22 | 114 |
regional part of cerebral cortex | 2.18e-15 | 22 |
cerebral cortex | 4.00e-13 | 25 |
pallium | 4.00e-13 | 25 |
regional part of forebrain | 7.35e-13 | 41 |
forebrain | 7.35e-13 | 41 |
anterior neural tube | 7.35e-13 | 41 |
future forebrain | 7.35e-13 | 41 |
neocortex | 1.04e-12 | 20 |
neural tube | 2.41e-12 | 56 |
neural rod | 2.41e-12 | 56 |
future spinal cord | 2.41e-12 | 56 |
neural keel | 2.41e-12 | 56 |
regional part of nervous system | 4.91e-12 | 53 |
regional part of brain | 4.91e-12 | 53 |
brain grey matter | 3.21e-11 | 34 |
gray matter | 3.21e-11 | 34 |
cerebral hemisphere | 8.07e-11 | 32 |
occipital lobe | 5.62e-10 | 5 |
telencephalon | 5.87e-10 | 34 |
regional part of telencephalon | 1.76e-09 | 32 |
central nervous system | 5.00e-09 | 81 |
brain | 7.25e-09 | 68 |
future brain | 7.25e-09 | 68 |
nervous system | 3.75e-08 | 89 |
male genital duct | 1.77e-07 | 3 |
internal male genitalia | 1.77e-07 | 3 |
gyrus | 2.05e-07 | 6 |
neurectoderm | 2.53e-07 | 86 |
neural plate | 2.82e-07 | 82 |
presumptive neural plate | 2.82e-07 | 82 |
pre-chordal neural plate | 5.21e-07 | 61 |