FFCP PHASE1:Hg19::chr3:184529948..184529990,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:184529948..184529990,+
|short_description=p1@VPS8
|description=CAGE_peak_1_at_VPS8_5end
|association_with_transcript=0bp_to_ENST00000422105,ENST00000436792...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23355 | |EntrezGene=23355 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29122 | |HGNC=29122 | ||
|TSSclassifier=strong | |||
|UniProt=C9JG07 | |UniProt=C9JG07 | ||
|association_with_transcript=0bp_to_ENST00000422105,ENST00000436792,ENST00000446204,ENST00000485024_5end | |||
|cluster_id=chr3:184529948..184529990,+ | |||
|coexpression_cluster_id=C468 | |||
|description=CAGE_peak_1_at_VPS8_5end | |||
|id=chr3:184529948..184529990,+ | |||
|ontology_enrichment_celltype=CL:0000738!6.02e-17!140;CL:0002031!4.20e-13!124;CL:0000766!1.20e-12!76;CL:0002087!1.91e-12!119;CL:0000037!1.55e-11!172;CL:0000566!1.55e-11!172;CL:0002032!2.41e-11!165;CL:0000837!2.41e-11!165;CL:0000557!1.27e-10!71;CL:0000839!1.48e-10!70;CL:0002009!1.96e-09!65;CL:0002194!3.52e-09!63;CL:0000576!3.52e-09!63;CL:0000040!3.52e-09!63;CL:0000559!3.52e-09!63;CL:0000988!3.56e-09!182;CL:0000763!2.92e-08!112;CL:0000049!2.92e-08!112;CL:0002057!7.36e-08!42 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.82e-18,136;CL:0002031,2.62e-14,120;CL:0000766,2.74e-14,72;CL:0002087,1.22e-13,115;CL:0000037,1.97e-12,168;CL:0002032,2.97e-12,161;CL:0000837,2.97e-12,161;CL:0000557,3.89e-12,67;CL:0000839,4.44e-12,66;CL:0002009,6.57e-11,61;CL:0002194,1.17e-10,59;CL:0000576,1.17e-10,59;CL:0000040,1.17e-10,59;CL:0000559,1.17e-10,59;CL:0000988,3.23e-10,177;CL:0000473,7.01e-10,48;CL:0000234,7.01e-10,48;CL:0000763,3.48e-09,108;CL:0000049,3.48e-09,108;CL:0000860,7.36e-08,42;CL:0002057,7.36e-08,42 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.53e-29!115;UBERON:0001049!6.53e-20!57;UBERON:0005068!6.53e-20!57;UBERON:0006241!6.53e-20!57;UBERON:0007135!6.53e-20!57;UBERON:0002780!5.48e-18!41;UBERON:0001890!5.48e-18!41;UBERON:0006240!5.48e-18!41;UBERON:0001017!1.66e-17!82;UBERON:0003080!2.00e-17!42;UBERON:0002616!7.02e-17!59;UBERON:0005743!1.36e-16!86;UBERON:0000073!1.28e-15!94;UBERON:0001016!1.28e-15!94;UBERON:0000955!1.37e-15!69;UBERON:0006238!1.37e-15!69;UBERON:0001893!9.47e-15!34;UBERON:0002020!1.04e-14!34;UBERON:0003528!1.04e-14!34;UBERON:0002791!3.47e-14!33;UBERON:0001869!9.32e-14!32;UBERON:0002390!2.78e-13!102;UBERON:0003061!2.78e-13!102;UBERON:0002193!2.01e-12!112;UBERON:0002619!1.52e-11!22;UBERON:0002346!5.26e-11!90;UBERON:0003075!5.29e-11!86;UBERON:0007284!5.29e-11!86;UBERON:0001950!1.08e-10!20;UBERON:0000956!1.56e-10!25;UBERON:0000203!1.56e-10!25;UBERON:0003056!8.39e-09!61;UBERON:0002371!2.39e-08!80;UBERON:0000153!2.59e-08!129;UBERON:0007811!2.59e-08!129;UBERON:0000033!1.82e-07!123;UBERON:0001474!2.05e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;5.12e-13;41!UBERON:0001890;5.12e-13;41!UBERON:0003528;1.25e-12;34!UBERON:0002020;1.25e-12;34!UBERON:0001893;1.53e-12;34!UBERON:0001869;2.75e-12;32!UBERON:0002791;3.00e-12;32!UBERON:0000073;1.19e-11;53!UBERON:0002616;1.19e-11;53!UBERON:0002619;1.81e-11;22!UBERON:0001950;1.23e-10;20!UBERON:0000956;1.82e-10;25!UBERON:0000203;1.82e-10;25!UBERON:0007023;6.91e-09;114!UBERON:0001017;4.22e-08;75!UBERON:0000955;2.18e-07;68!UBERON:0001016;6.96e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.26e-28,114;UBERON:0001049,2.11e-20,56;UBERON:0005068,2.11e-20,56;UBERON:0006241,2.11e-20,56;UBERON:0007135,2.11e-20,56;UBERON:0000073,5.66e-19,53;UBERON:0002616,5.66e-19,53;UBERON:0002780,5.48e-18,41;UBERON:0001890,5.48e-18,41;UBERON:0003080,5.48e-18,41;UBERON:0006240,5.48e-18,41;UBERON:0001017,7.93e-18,81;UBERON:0001016,1.10e-16,89;UBERON:0000955,6.34e-16,68;UBERON:0006238,6.34e-16,68;UBERON:0001893,9.47e-15,34;UBERON:0003528,1.04e-14,34;UBERON:0002020,1.04e-14,34;UBERON:0002390,1.15e-14,98;UBERON:0003061,1.15e-14,98;UBERON:0001869,9.32e-14,32;UBERON:0002791,9.66e-14,32;UBERON:0002193,1.18e-13,108;UBERON:0003075,1.24e-11,82;UBERON:0007284,1.24e-11,82;UBERON:0002346,1.31e-11,86;UBERON:0002619,1.52e-11,22;UBERON:0001950,1.08e-10,20;UBERON:0000956,1.56e-10,25;UBERON:0000203,1.56e-10,25;UBERON:0002405,5.50e-10,93;UBERON:0002371,1.65e-09,76;UBERON:0003056,3.69e-09,61;UBERON:0001474,1.99e-08,82;UBERON:0010371,2.10e-07,104;UBERON:0004765,2.68e-07,90 | |||
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| ||
|short_description=p1@VPS8 | |||
}} | }} |
Latest revision as of 02:55, 17 September 2015
Short description: | p1@VPS8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_VPS8_5end |
Coexpression cluster: | C468_Neutrophils_Eosinophils_cerebellum_occipital_Whole_temporal_parietal |
Association with transcript: | 0bp_to_ENST00000422105, ENST00000436792, ENST00000446204, ENST00000485024_5end |
EntrezGene: | VPS8 |
HGNC: | 29122 |
UniProt: | C9JG07 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 2.82e-18 | 136 |
hematopoietic lineage restricted progenitor cell | 2.62e-14 | 120 |
myeloid leukocyte | 2.74e-14 | 72 |
nongranular leukocyte | 1.22e-13 | 115 |
hematopoietic stem cell | 1.97e-12 | 168 |
hematopoietic oligopotent progenitor cell | 2.97e-12 | 161 |
hematopoietic multipotent progenitor cell | 2.97e-12 | 161 |
granulocyte monocyte progenitor cell | 3.89e-12 | 67 |
myeloid lineage restricted progenitor cell | 4.44e-12 | 66 |
macrophage dendritic cell progenitor | 6.57e-11 | 61 |
monopoietic cell | 1.17e-10 | 59 |
monocyte | 1.17e-10 | 59 |
monoblast | 1.17e-10 | 59 |
promonocyte | 1.17e-10 | 59 |
hematopoietic cell | 3.23e-10 | 177 |
defensive cell | 7.01e-10 | 48 |
phagocyte | 7.01e-10 | 48 |
myeloid cell | 3.48e-09 | 108 |
common myeloid progenitor | 3.48e-09 | 108 |
classical monocyte | 7.36e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.36e-08 | 42 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.26e-28 | 114 |
neural tube | 2.11e-20 | 56 |
neural rod | 2.11e-20 | 56 |
future spinal cord | 2.11e-20 | 56 |
neural keel | 2.11e-20 | 56 |
regional part of nervous system | 5.66e-19 | 53 |
regional part of brain | 5.66e-19 | 53 |
regional part of forebrain | 5.48e-18 | 41 |
forebrain | 5.48e-18 | 41 |
anterior neural tube | 5.48e-18 | 41 |
future forebrain | 5.48e-18 | 41 |
central nervous system | 7.93e-18 | 81 |
nervous system | 1.10e-16 | 89 |
brain | 6.34e-16 | 68 |
future brain | 6.34e-16 | 68 |
telencephalon | 9.47e-15 | 34 |
brain grey matter | 1.04e-14 | 34 |
gray matter | 1.04e-14 | 34 |
hematopoietic system | 1.15e-14 | 98 |
blood island | 1.15e-14 | 98 |
cerebral hemisphere | 9.32e-14 | 32 |
regional part of telencephalon | 9.66e-14 | 32 |
hemolymphoid system | 1.18e-13 | 108 |
neural plate | 1.24e-11 | 82 |
presumptive neural plate | 1.24e-11 | 82 |
neurectoderm | 1.31e-11 | 86 |
regional part of cerebral cortex | 1.52e-11 | 22 |
neocortex | 1.08e-10 | 20 |
cerebral cortex | 1.56e-10 | 25 |
pallium | 1.56e-10 | 25 |
immune system | 5.50e-10 | 93 |
bone marrow | 1.65e-09 | 76 |
pre-chordal neural plate | 3.69e-09 | 61 |
bone element | 1.99e-08 | 82 |
ecto-epithelium | 2.10e-07 | 104 |
skeletal element | 2.68e-07 | 90 |