FFCP PHASE1:Hg19::chr3:129158926..129159006,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:129158926..129159006,+
|short_description=p2@IFT122
|description=CAGE_peak_2_at_IFT122_5end
|association_with_transcript=0bp_to_ENST00000296266,ENST0000034...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55764 | |EntrezGene=55764 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13556 | |HGNC=13556 | ||
|TSSclassifier=strong | |||
|UniProt=G3XAB1,Q9NV68,Q9HBG5,Q9HBG6,Q9BTY4 | |UniProt=G3XAB1,Q9NV68,Q9HBG5,Q9HBG6,Q9BTY4 | ||
|association_with_transcript=0bp_to_ENST00000296266,ENST00000347300,NM_018262,NM_052985,NM_052989,NM_052990,uc003eml.2,uc003emm.2,uc003emn.2,uc003emo.2,uc003emp.2,uc003emq.2,uc010htc.2,uc011bkx.1,uc011bky.1_5end | |||
|cluster_id=chr3:129158926..129159006,+ | |||
|description=CAGE_peak_2_at_IFT122_5end | |||
|id=chr3:129158926..129159006,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.72e-43!115;UBERON:0001049!3.02e-17!57;UBERON:0005068!3.02e-17!57;UBERON:0006241!3.02e-17!57;UBERON:0007135!3.02e-17!57;UBERON:0005743!9.41e-17!86;UBERON:0001017!1.01e-16!82;UBERON:0000955!2.66e-16!69;UBERON:0006238!2.66e-16!69;UBERON:0002616!2.96e-16!59;UBERON:0000073!3.18e-14!94;UBERON:0001016!3.18e-14!94;UBERON:0003075!9.36e-14!86;UBERON:0007284!9.36e-14!86;UBERON:0002346!1.22e-12!90;UBERON:0003080!1.23e-12!42;UBERON:0002780!3.82e-12!41;UBERON:0001890!3.82e-12!41;UBERON:0006240!3.82e-12!41;UBERON:0001893!2.38e-09!34;UBERON:0000153!2.69e-09!129;UBERON:0007811!2.69e-09!129;UBERON:0002020!3.80e-09!34;UBERON:0003528!3.80e-09!34;UBERON:0002791!5.15e-09!33;UBERON:0001869!1.68e-08!32;UBERON:0000033!2.14e-08!123;UBERON:0003056!4.44e-08!61;UBERON:0002619!1.08e-07!22;UBERON:0001950!1.97e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;2.80e-12;114!UBERON:0000073;1.96e-09;53!UBERON:0002616;1.96e-09;53!UBERON:0002780;2.18e-09;41!UBERON:0001890;2.18e-09;41!UBERON:0001893;4.38e-08;34!UBERON:0001017;5.26e-08;75!UBERON:0003528;1.01e-07;34!UBERON:0002020;1.01e-07;34!UBERON:0001869;1.14e-07;32!UBERON:0002619;1.46e-07;22!UBERON:0002791;1.57e-07;32!UBERON:0000955;2.69e-07;68!UBERON:0001950;3.13e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.46e-43,114;UBERON:0001049,8.98e-17,56;UBERON:0005068,8.98e-17,56;UBERON:0006241,8.98e-17,56;UBERON:0007135,8.98e-17,56;UBERON:0001017,2.29e-16,81;UBERON:0000955,7.45e-16,68;UBERON:0006238,7.45e-16,68;UBERON:0000073,1.19e-15,53;UBERON:0002616,1.19e-15,53;UBERON:0001016,9.12e-14,89;UBERON:0003075,1.23e-13,82;UBERON:0007284,1.23e-13,82;UBERON:0002346,1.71e-12,86;UBERON:0002780,3.62e-12,41;UBERON:0001890,3.62e-12,41;UBERON:0003080,3.62e-12,41;UBERON:0006240,3.62e-12,41;UBERON:0001893,2.28e-09,34;UBERON:0003528,3.65e-09,34;UBERON:0002020,3.65e-09,34;UBERON:0002791,1.48e-08,32;UBERON:0001869,1.62e-08,32;UBERON:0003056,5.00e-08,61;UBERON:0011216,9.61e-08,223;UBERON:0002619,1.05e-07,22;UBERON:0010314,1.83e-07,132;UBERON:0001950,1.91e-07,20;UBERON:0010371,5.67e-07,104 | |||
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| ||
|short_description=p2@IFT122 | |||
}} | }} |
Latest revision as of 17:11, 24 September 2015
Short description: | p2@IFT122 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_IFT122_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000296266, ENST00000347300, NM_018262, NM_052985, NM_052989, NM_052990, uc003eml.2, uc003emm.2, uc003emn.2, uc003emo.2, uc003emp.2, uc003emq.2, uc010htc.2, uc011bkx.1, uc011bky.1_5end |
EntrezGene: | IFT122 |
HGNC: | 13556 |
UniProt: | G3XAB1Q9NV68Q9HBG5Q9HBG6Q9BTY4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 6.46e-43 | 114 |
neural tube | 8.98e-17 | 56 |
neural rod | 8.98e-17 | 56 |
future spinal cord | 8.98e-17 | 56 |
neural keel | 8.98e-17 | 56 |
central nervous system | 2.29e-16 | 81 |
brain | 7.45e-16 | 68 |
future brain | 7.45e-16 | 68 |
regional part of nervous system | 1.19e-15 | 53 |
regional part of brain | 1.19e-15 | 53 |
nervous system | 9.12e-14 | 89 |
neural plate | 1.23e-13 | 82 |
presumptive neural plate | 1.23e-13 | 82 |
neurectoderm | 1.71e-12 | 86 |
regional part of forebrain | 3.62e-12 | 41 |
forebrain | 3.62e-12 | 41 |
anterior neural tube | 3.62e-12 | 41 |
future forebrain | 3.62e-12 | 41 |
telencephalon | 2.28e-09 | 34 |
brain grey matter | 3.65e-09 | 34 |
gray matter | 3.65e-09 | 34 |
regional part of telencephalon | 1.48e-08 | 32 |
cerebral hemisphere | 1.62e-08 | 32 |
pre-chordal neural plate | 5.00e-08 | 61 |
organ system subdivision | 9.61e-08 | 223 |
regional part of cerebral cortex | 1.05e-07 | 22 |
structure with developmental contribution from neural crest | 1.83e-07 | 132 |
neocortex | 1.91e-07 | 20 |
ecto-epithelium | 5.67e-07 | 104 |