FFCP PHASE1:Hg19::chr3:128444994..128445044,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:128444994..128445044,+
|short_description=p1@RAB7A
|description=CAGE_peak_1_at_RAB7A_5end
|association_with_transcript=0bp_to_ENST00000482525_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7879 | |EntrezGene=7879 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9788 | |HGNC=9788 | ||
|TSSclassifier=strong | |||
|UniProt=C9J8S3 | |UniProt=C9J8S3 | ||
|association_with_transcript=0bp_to_ENST00000482525_5end | |||
|cluster_id=chr3:128444994..128445044,+ | |||
|coexpression_cluster_id=C17 | |||
|description=CAGE_peak_1_at_RAB7A_5end | |||
|id=chr3:128444994..128445044,+ | |||
|ontology_enrichment_celltype=CL:0000766!2.16e-26!76;CL:0000557!8.34e-24!71;CL:0000839!3.30e-22!70;CL:0002009!1.05e-21!65;CL:0002194!1.15e-21!63;CL:0000576!1.15e-21!63;CL:0000040!1.15e-21!63;CL:0000559!1.15e-21!63;CL:0002057!4.08e-21!42;CL:0000860!4.89e-18!45;CL:0000763!3.55e-14!112;CL:0000049!3.55e-14!112;CL:0000063!1.36e-07!578 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.96e-19;33!CL:0002057;6.96e-19;33!CL:0000473;1.00e-18;39!CL:0000234;1.00e-18;39!CL:0000576;3.00e-14;48!CL:0000766;4.24e-13;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,3.09e-29,72;CL:0000557,1.40e-26,67;CL:0000839,7.20e-25,66;CL:0000473,1.54e-24,48;CL:0000234,1.54e-24,48;CL:0002194,1.68e-24,59;CL:0000576,1.68e-24,59;CL:0000040,1.68e-24,59;CL:0000559,1.68e-24,59;CL:0002009,1.77e-24,61;CL:0000860,4.08e-21,42;CL:0002057,4.08e-21,42;CL:0000763,1.56e-15,108;CL:0000049,1.56e-15,108 | |||
|ontology_enrichment_development_v019=CL:0002057;1.27e-15;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!3.86e-22!80;UBERON:0001474!1.17e-20!86;UBERON:0002405!3.60e-19!115;UBERON:0004765!1.90e-18!101;UBERON:0001434!1.90e-18!101;UBERON:0002193!1.26e-17!112;UBERON:0002390!3.80e-16!102;UBERON:0003061!3.80e-16!102;UBERON:0000467!4.90e-12!625;UBERON:0000480!1.11e-11!626;UBERON:0000062!3.31e-11!511;UBERON:0002204!1.21e-10!167;UBERON:0000468!1.27e-10!659;UBERON:0003081!3.15e-10!216;UBERON:0000923!3.38e-08!604;UBERON:0005291!3.38e-08!604;UBERON:0006598!3.38e-08!604;UBERON:0002532!3.38e-08!604;UBERON:0002050!5.16e-08!605;UBERON:0005423!5.16e-08!605;UBERON:0000922!2.83e-07!612 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.55e-24,76;UBERON:0001474,8.23e-23,82;UBERON:0002405,3.55e-22,93;UBERON:0004765,1.08e-20,90;UBERON:0002193,3.27e-19,108;UBERON:0001434,3.76e-19,100;UBERON:0002390,9.76e-18,98;UBERON:0003061,9.76e-18,98;UBERON:0002204,5.60e-11,167;UBERON:0003081,8.92e-11,203;UBERON:0000926,8.86e-10,315;UBERON:0004120,8.86e-10,315;UBERON:0006603,8.86e-10,315;UBERON:0002050,9.29e-09,564;UBERON:0000923,1.52e-08,560;UBERON:0010316,1.52e-08,560;UBERON:0005291,1.52e-08,560;UBERON:0006598,1.52e-08,560;UBERON:0010317,1.52e-08,560;UBERON:0002532,1.52e-08,560;UBERON:0005423,4.37e-08,581;UBERON:0000922,2.19e-07,592 | |||
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143.935253044152 | ||
|short_description=p1@RAB7A | |||
}} | }} |
Latest revision as of 07:21, 20 September 2015
Short description: | p1@RAB7A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RAB7A_5end |
Coexpression cluster: | C17_Mast_CD14_Monocytederived_Lymphatic_Smooth_mesenchymal_Macrophage |
Association with transcript: | 0bp_to_ENST00000482525_5end |
EntrezGene: | RAB7A |
HGNC: | 9788 |
UniProt: | C9J8S3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 3.09e-29 | 72 |
granulocyte monocyte progenitor cell | 1.40e-26 | 67 |
myeloid lineage restricted progenitor cell | 7.20e-25 | 66 |
defensive cell | 1.54e-24 | 48 |
phagocyte | 1.54e-24 | 48 |
monopoietic cell | 1.68e-24 | 59 |
monocyte | 1.68e-24 | 59 |
monoblast | 1.68e-24 | 59 |
promonocyte | 1.68e-24 | 59 |
macrophage dendritic cell progenitor | 1.77e-24 | 61 |
classical monocyte | 4.08e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.08e-21 | 42 |
myeloid cell | 1.56e-15 | 108 |
common myeloid progenitor | 1.56e-15 | 108 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.55e-24 | 76 |
bone element | 8.23e-23 | 82 |
immune system | 3.55e-22 | 93 |
skeletal element | 1.08e-20 | 90 |
hemolymphoid system | 3.27e-19 | 108 |
skeletal system | 3.76e-19 | 100 |
hematopoietic system | 9.76e-18 | 98 |
blood island | 9.76e-18 | 98 |
musculoskeletal system | 5.60e-11 | 167 |
lateral plate mesoderm | 8.92e-11 | 203 |
mesoderm | 8.86e-10 | 315 |
mesoderm-derived structure | 8.86e-10 | 315 |
presumptive mesoderm | 8.86e-10 | 315 |
embryonic structure | 9.29e-09 | 564 |
germ layer | 1.52e-08 | 560 |
germ layer / neural crest | 1.52e-08 | 560 |
embryonic tissue | 1.52e-08 | 560 |
presumptive structure | 1.52e-08 | 560 |
germ layer / neural crest derived structure | 1.52e-08 | 560 |
epiblast (generic) | 1.52e-08 | 560 |
developing anatomical structure | 4.37e-08 | 581 |
embryo | 2.19e-07 | 592 |