FFCP PHASE1:Hg19::chr3:119013434..119013460,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:119013434..119013460,+
|short_description=p3@ARHGAP31
|description=CAGE_peak_3_at_ARHGAP31_5end
|association_with_transcript=-162bp_to_ENST00000543280_5end...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57514 | |EntrezGene=57514 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29216 | |HGNC=29216 | ||
|TSSclassifier=strong | |||
|UniProt=F5H7Q1 | |UniProt=F5H7Q1 | ||
|association_with_transcript=-162bp_to_ENST00000543280_5end | |||
|cluster_id=chr3:119013434..119013460,+ | |||
|coexpression_cluster_id=C1754 | |||
|description=CAGE_peak_3_at_ARHGAP31_5end | |||
|id=chr3:119013434..119013460,+ | |||
|ontology_enrichment_celltype=CL:0000557!3.85e-24!71;CL:0002009!7.95e-24!65;CL:0002057!3.30e-23!42;CL:0002194!1.73e-22!63;CL:0000576!1.73e-22!63;CL:0000040!1.73e-22!63;CL:0000559!1.73e-22!63;CL:0000839!6.81e-22!70;CL:0000766!3.44e-21!76;CL:0000860!1.64e-19!45;CL:0000738!1.24e-15!140;CL:0002031!5.00e-13!124;CL:0002087!5.62e-13!119;CL:0000048!2.75e-11!430;CL:0000723!3.40e-10!436;CL:0000134!4.71e-10!358;CL:0000034!9.45e-10!444;CL:0002320!1.45e-09!365;CL:0000219!1.43e-08!390;CL:0000763!5.63e-08!112;CL:0000049!5.63e-08!112;CL:0000451!6.77e-08!10;CL:0000988!5.53e-07!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.18e-25;33!CL:0002057;6.18e-25;33!CL:0000473;1.62e-23;39!CL:0000234;1.62e-23;39!CL:0000576;7.31e-16;48!CL:0000766;1.98e-12;69!CL:0000451;2.12e-09;10!CL:0000990;6.76e-08;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,6.13e-31,67;CL:0002009,1.03e-30,61;CL:0000473,1.52e-30,48;CL:0000234,1.52e-30,48;CL:0002194,5.25e-29,59;CL:0000576,5.25e-29,59;CL:0000040,5.25e-29,59;CL:0000559,5.25e-29,59;CL:0000839,2.12e-28,66;CL:0000766,8.02e-28,72;CL:0000860,2.70e-27,42;CL:0002057,2.70e-27,42;CL:0000738,3.02e-21,136;CL:0002031,2.22e-17,120;CL:0002087,3.80e-17,115;CL:0000763,2.97e-14,108;CL:0000049,2.97e-14,108;CL:0000988,1.11e-12,177;CL:0000134,1.53e-11,354;CL:0000037,3.93e-11,168;CL:0002320,1.23e-10,361;CL:0000048,6.70e-10,427;CL:0002032,8.02e-10,161;CL:0000837,8.02e-10,161;CL:0000219,9.55e-10,386;CL:0000451,1.94e-09,10;CL:0000723,4.58e-09,433;CL:0000034,7.53e-09,441;CL:0000990,6.10e-08,8 | |||
|ontology_enrichment_development_v019=CL:0002057;2.20e-20;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.27e-22!80;UBERON:0001474!4.30e-22!86;UBERON:0004765!2.92e-21!101;UBERON:0001434!2.92e-21!101;UBERON:0002390!3.19e-20!102;UBERON:0003061!3.19e-20!102;UBERON:0002193!1.04e-19!112;UBERON:0002204!5.39e-18!167;UBERON:0003081!1.06e-13!216;UBERON:0002405!1.81e-13!115;UBERON:0002384!2.06e-09!375;UBERON:0002616!1.64e-08!59;UBERON:0000479!2.21e-08!787;UBERON:0007023!2.54e-08!115;UBERON:0001049!2.89e-08!57;UBERON:0005068!2.89e-08!57;UBERON:0006241!2.89e-08!57;UBERON:0007135!2.89e-08!57;UBERON:0001017!7.27e-07!82;UBERON:0000955!7.98e-07!69;UBERON:0006238!7.98e-07!69 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001474,9.30e-30,82;UBERON:0002371,1.52e-29,76;UBERON:0004765,9.93e-26,90;UBERON:0002390,1.70e-24,98;UBERON:0003061,1.70e-24,98;UBERON:0001434,8.54e-24,100;UBERON:0002405,1.97e-22,93;UBERON:0002193,7.04e-22,108;UBERON:0002204,1.45e-15,167;UBERON:0003081,2.13e-13,203;UBERON:0002384,1.04e-10,371;UBERON:0000479,9.24e-08,773;UBERON:0001049,1.80e-07,56;UBERON:0005068,1.80e-07,56;UBERON:0006241,1.80e-07,56;UBERON:0007135,1.80e-07,56;UBERON:0000073,3.17e-07,53;UBERON:0002616,3.17e-07,53 | |||
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|phase1_expression=3.81524596468169,4.49611100171065,2.96004248601539,2.00146596706261,1.34088328328186,5.23403114460221,2.53299878168311,0.631719873426831,0.783556884599516,0.245733936501509,0.697801167972428,3.71350332621293,4.74780560811216,0.37129905888014,0.331397375727916,4.03395087871065,1.20538905604795,0,0.487932798790507,5.17108443922509,2.65200898617529,5.01527554364941,1.71741592278634,2.18999080116615,1.63205431473244,1.68109492645493,1.88831355734875,1.33808328233255,3.93364276848904,4.60595277716655,4.33485145285013,0,0.30120591877825,0,0,0.284338464974843,0,17.7278530730201,10.6288557159175,9.54847831149748,1.34349284543955,0.971680998056939,1.03030227053675,7.4153101777578,19.6495490718181,17.4660524055228,15.1078873988695,16.446715520873,13.9367866902797,11.7953880852082,18.6997315766243,15.371344942758,6.89491361473237,12.9096936716765,14.8969135253776,12.0475097307267,21.8324920046277,17.0789848178264,22.9562919278177,25.3533931390114,30.0488449125549,7.58657990429447,19.5474384469199,18.3276642729058,22.9265298516581,26.6671055604836,33.632401445761,6.02996796616184,16.1659704710262,11.9453864587814,9.08099253950053,28.3573779710425,31.6462387440884,3.59133986730301,5.10250319916104,3.98351426465914,3.14520167210186,3.00353785683013,2.08943262706204,0.570025487482497,0.39783335439818,0.547992461293902,0,1.09227722252426,0,0.426730222566507,0,0.574752439954483,0,0,1.1384259382189,2.34894875748376,0.382273228125229,5.28685314316103,6.72610275577843,0,0.786839080455332,0.393010762749165,0.616804496998528,0,0,0,0,0.111410456885174,0.883817722424512,0.886135578334485,1.08321545506006,0.640456598628376,0.390178042679635,0.164437904603676,0.276350017785848,0,0.14828656316206,0,0,0.226618685395132,0,0,0.759059076058509,0.318565414324097,0,1.90090408889675,0.451725357233318,0.127986611154418,0,0.473554504088034,0,3.42731463482045,2.13952156626806,1.44824403882799,0,0.670700859703636,0.255725123687061,1.44575660953827,1.50401373190767,0.579386075843295,1.5905718941022,1.45990461090791,0.283604451492204,1.33037638477538,1.40535657109002,1.24430121722827,0,0.370784442784429,8.11368484136708,5.22389211897802,12.3650903282545,9.77811559651902,11.4398982156026,8.91498003190956,0.39752481473341,0,0.347140501607594,0,0.419499436209906,0.275118041940067,0.417989933073621,0.516833518338658,0.35576626268671,1.00416183829401,0.805658634218294,0,0,0.367663080345869,0.81014194788176,0.357198913136319,0.22452937262617,0.900891843866578,0,0,0.366403487860815,0,0,0,4.96971951695318,0.886413581652058,0.926864265692532,0.860509862246441,0.354668382198357,0.560677600142307,0,2.4666754841716,0.622422070799533,0.538842688278752,0.490385709340376,1.21085942115945,4.03323147135999,0.468642863667593,0,0.570471821544449,0,0.23486899728753,0.323745888736263,0.561803226808994,0.408308342509787,0.245668634623536,0.309977343527296,0,0.989067717114227,0.910161361938026,0.718618141816238,0.673344455816265,0.500474079487857,0.277064115484183,2.63386572528503,4.29082914118628,1.35214253015937,0.453728732640084,2.87023417102179,2.13557388818567,1.48352330811693,1.20036438433761,1.13357782162283,2.31876486041066,3.53622027030021,0.843881661206331,0.876933046450788,0.757301322732344,2.48534726334208,0.80823028409406,3.19508633264953,0.906768884048762,2.37384829234683,0.193260853163297,0,0,0,0,0.116193942869518,0.310983165046111,0.252320850875628,0,1.56449532329816,1.28648187638577,0,1.39310378409594,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,1.6462960453256,0,0,0,0.590789906681404,0,0,0.514703430895577,0,0,0.201057944823262,0.185176890317059,1.3032332212413,0,0,0.579652024875384,1.76113041353732,1.01056513432752,0.462985512576611,0.951270761172991,0,0,3.69325509131096,4.21207677250628,3.86441021950693,0.93733833986777,1.34385702559088,0.708875486211932,0.0895585227028483,0,0,1.97065295158377,0.616339038092582,4.35389042635621,2.59415916150531,4.29224273649692,0.190493682876507,0.763976851116555,5.86087236050235,0,0.102827492703324,0.600686115687835,0.285826432630578,1.00917975910825,1.30788020649984,0.7333828582095,1.03417372606222,3.57656445851882,0,1.59562869950922,0,1.80045161983499,0,1.3321108950805,0.714889968290738,0,0.823240336780769,0.65147236858747,0,1.58390374586686,0.301439377059586,0.871533458600294,0.99972991182057,3.64871341923571,2.00902836572851,4.21667878966063,1.91699884393266,3.44585807502342,1.42636905040718,1.73737568001095,0.61642896765115,0.895304816199478,0.336255431980582,2.75843064282698,1.50939302401662,1.54011643535698,4.06551398755941,1.30139853857622,0.773288812777695,0.167516265334349,0.637938751653163,0,0,0.414415513436035,0.24538298343828,1.00034104211935,0,3.11956292296211,1.96271887676878,2.36553622550902,2.6942525448324,0.902838299183157,2.27407504055985,1.03473071292505,2.65690239414175,0.553107505625109,0.434418072340414,0.587403472388222,0.686286847621712,2.27444828735176,4.31428401637234,5.33637789017222,0,1.66435439510497,3.32629322662648,3.47350930946288,9.51464234385987,3.36792113319688,3.9723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| ||
|short_description=p3@ARHGAP31 | |||
}} | }} |
Latest revision as of 19:42, 19 September 2015
Short description: | p3@ARHGAP31 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ARHGAP31_5end |
Coexpression cluster: | C1754_immature_CD14_Dendritic_CD34_Basophils_Mast_migratory |
Association with transcript: | -162bp_to_ENST00000543280_5end |
EntrezGene: | ARHGAP31 |
HGNC: | 29216 |
UniProt: | F5H7Q1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 6.13e-31 | 67 |
macrophage dendritic cell progenitor | 1.03e-30 | 61 |
defensive cell | 1.52e-30 | 48 |
phagocyte | 1.52e-30 | 48 |
monopoietic cell | 5.25e-29 | 59 |
monocyte | 5.25e-29 | 59 |
monoblast | 5.25e-29 | 59 |
promonocyte | 5.25e-29 | 59 |
myeloid lineage restricted progenitor cell | 2.12e-28 | 66 |
myeloid leukocyte | 8.02e-28 | 72 |
classical monocyte | 2.70e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.70e-27 | 42 |
leukocyte | 3.02e-21 | 136 |
hematopoietic lineage restricted progenitor cell | 2.22e-17 | 120 |
nongranular leukocyte | 3.80e-17 | 115 |
myeloid cell | 2.97e-14 | 108 |
common myeloid progenitor | 2.97e-14 | 108 |
hematopoietic cell | 1.11e-12 | 177 |
mesenchymal cell | 1.53e-11 | 354 |
hematopoietic stem cell | 3.93e-11 | 168 |
connective tissue cell | 1.23e-10 | 361 |
multi fate stem cell | 6.70e-10 | 427 |
hematopoietic oligopotent progenitor cell | 8.02e-10 | 161 |
hematopoietic multipotent progenitor cell | 8.02e-10 | 161 |
motile cell | 9.55e-10 | 386 |
dendritic cell | 1.94e-09 | 10 |
somatic stem cell | 4.58e-09 | 433 |
stem cell | 7.53e-09 | 441 |
conventional dendritic cell | 6.10e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
bone element | 9.30e-30 | 82 |
bone marrow | 1.52e-29 | 76 |
skeletal element | 9.93e-26 | 90 |
hematopoietic system | 1.70e-24 | 98 |
blood island | 1.70e-24 | 98 |
skeletal system | 8.54e-24 | 100 |
immune system | 1.97e-22 | 93 |
hemolymphoid system | 7.04e-22 | 108 |
musculoskeletal system | 1.45e-15 | 167 |
lateral plate mesoderm | 2.13e-13 | 203 |
connective tissue | 1.04e-10 | 371 |
tissue | 9.24e-08 | 773 |
neural tube | 1.80e-07 | 56 |
neural rod | 1.80e-07 | 56 |
future spinal cord | 1.80e-07 | 56 |
neural keel | 1.80e-07 | 56 |
regional part of nervous system | 3.17e-07 | 53 |
regional part of brain | 3.17e-07 | 53 |