FFCP PHASE1:Hg19::chr3:112280439..112280457,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:112280439..112280457,-
|short_description=p3@ATG3
|description=CAGE_peak_3_at_ATG3_5end
|association_with_transcript=22bp_to_ENST00000465980_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=64422 | |EntrezGene=64422 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20962 | |HGNC=20962 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=22bp_to_ENST00000465980_5end | |||
|cluster_id=chr3:112280439..112280457,- | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_3_at_ATG3_5end | |||
|id=chr3:112280439..112280457,- | |||
|ontology_enrichment_celltype=CL:0000766!3.78e-28!76;CL:0002009!2.34e-27!65;CL:0000839!5.95e-27!70;CL:0002194!1.29e-26!63;CL:0000576!1.29e-26!63;CL:0000040!1.29e-26!63;CL:0000559!1.29e-26!63;CL:0000738!2.02e-26!140;CL:0002057!1.60e-25!42;CL:0000557!1.75e-25!71;CL:0000860!3.48e-25!45;CL:0002031!9.85e-23!124;CL:0002087!1.61e-22!119;CL:0000037!3.09e-22!172;CL:0000566!3.09e-22!172;CL:0000763!4.27e-22!112;CL:0000049!4.27e-22!112;CL:0002032!5.20e-21!165;CL:0000837!5.20e-21!165;CL:0000988!2.04e-20!182;CL:0000134!1.60e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.75e-24;33!CL:0002057;6.75e-24;33!CL:0000473;9.15e-23;39!CL:0000234;9.15e-23;39!CL:0000576;1.51e-17;48!CL:0000766;5.21e-16;69!CL:0000738;2.66e-08;136!CL:0002087;3.07e-07;104!CL:0000763;4.26e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,2.37e-33,48;CL:0000234,2.37e-33,48;CL:0000766,3.48e-33,72;CL:0002009,3.74e-32,61;CL:0000839,2.24e-31,66;CL:0002194,2.68e-31,59;CL:0000576,2.68e-31,59;CL:0000040,2.68e-31,59;CL:0000559,2.68e-31,59;CL:0000860,4.08e-30,42;CL:0002057,4.08e-30,42;CL:0000557,4.83e-30,67;CL:0000738,1.18e-29,136;CL:0000763,1.31e-25,108;CL:0000049,1.31e-25,108;CL:0002031,4.97e-25,120;CL:0002087,6.45e-25,115;CL:0000037,8.55e-25,168;CL:0000988,5.83e-24,177;CL:0002032,2.39e-23,161;CL:0000837,2.39e-23,161;CL:0000134,5.55e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;1.31e-22;42!CL:0000049;5.08e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.44e-27!102;UBERON:0003061!2.44e-27!102;UBERON:0002193!5.09e-25!112;UBERON:0002371!2.57e-22!80;UBERON:0001474!6.69e-21!86;UBERON:0004765!1.09e-17!101;UBERON:0001434!1.09e-17!101;UBERON:0002405!1.23e-16!115;UBERON:0002204!1.74e-07!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.26e-32,98;UBERON:0003061,3.26e-32,98;UBERON:0002193,3.21e-29,108;UBERON:0002371,5.40e-27,76;UBERON:0001474,2.52e-25,82;UBERON:0002405,1.22e-23,93;UBERON:0004765,6.98e-23,90;UBERON:0001434,2.49e-19,100;UBERON:0003081,9.90e-12,203;UBERON:0002204,3.05e-08,167 | |||
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| ||
|short_description=p3@ATG3 | |||
}} | }} |
Latest revision as of 13:47, 19 September 2015
Short description: | p3@ATG3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ATG3_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 22bp_to_ENST00000465980_5end |
EntrezGene: | ATG3 |
HGNC: | 20962 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 2.37e-33 | 48 |
phagocyte | 2.37e-33 | 48 |
myeloid leukocyte | 3.48e-33 | 72 |
macrophage dendritic cell progenitor | 3.74e-32 | 61 |
myeloid lineage restricted progenitor cell | 2.24e-31 | 66 |
monopoietic cell | 2.68e-31 | 59 |
monocyte | 2.68e-31 | 59 |
monoblast | 2.68e-31 | 59 |
promonocyte | 2.68e-31 | 59 |
classical monocyte | 4.08e-30 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.08e-30 | 42 |
granulocyte monocyte progenitor cell | 4.83e-30 | 67 |
leukocyte | 1.18e-29 | 136 |
myeloid cell | 1.31e-25 | 108 |
common myeloid progenitor | 1.31e-25 | 108 |
hematopoietic lineage restricted progenitor cell | 4.97e-25 | 120 |
nongranular leukocyte | 6.45e-25 | 115 |
hematopoietic stem cell | 8.55e-25 | 168 |
hematopoietic cell | 5.83e-24 | 177 |
hematopoietic oligopotent progenitor cell | 2.39e-23 | 161 |
hematopoietic multipotent progenitor cell | 2.39e-23 | 161 |
mesenchymal cell | 5.55e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.26e-32 | 98 |
blood island | 3.26e-32 | 98 |
hemolymphoid system | 3.21e-29 | 108 |
bone marrow | 5.40e-27 | 76 |
bone element | 2.52e-25 | 82 |
immune system | 1.22e-23 | 93 |
skeletal element | 6.98e-23 | 90 |
skeletal system | 2.49e-19 | 100 |
lateral plate mesoderm | 9.90e-12 | 203 |
musculoskeletal system | 3.05e-08 | 167 |