FFCP PHASE1:Hg19::chr3:108308559..108308584,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:108308559..108308584,+
|short_description=p1@DZIP3
|description=CAGE_peak_1_at_DZIP3_5end
|association_with_transcript=0bp_to_ENST00000486815_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9666 | |EntrezGene=9666 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30938 | |HGNC=30938 | ||
|TSSclassifier=strong | |||
|UniProt=C9JRX4 | |UniProt=C9JRX4 | ||
|association_with_transcript=0bp_to_ENST00000486815_5end | |||
|cluster_id=chr3:108308559..108308584,+ | |||
|description=CAGE_peak_1_at_DZIP3_5end | |||
|id=chr3:108308559..108308584,+ | |||
|ontology_enrichment_celltype=CL:0000945!8.10e-12!24;CL:0000826!8.10e-12!24;CL:0000542!7.65e-11!53;CL:0000051!7.65e-11!53;CL:0000838!2.00e-10!52;CL:0000236!2.97e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000945;6.41e-12;24!CL:0000542;4.78e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,6.24e-12,24;CL:0000826,6.24e-12,24;CL:0000542,7.77e-11,53;CL:0000051,7.77e-11,53;CL:0000838,2.04e-10,52;CL:0000236,2.57e-07,14;CL:0002087,2.93e-07,115;CL:0000738,5.75e-07,136 | |||
|ontology_enrichment_development_v019=CL:0000051;4.78e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.53e-19!82;UBERON:0000073!1.43e-18!94;UBERON:0001016!1.43e-18!94;UBERON:0005743!7.01e-18!86;UBERON:0000955!1.60e-15!69;UBERON:0006238!1.60e-15!69;UBERON:0001049!1.23e-14!57;UBERON:0005068!1.23e-14!57;UBERON:0006241!1.23e-14!57;UBERON:0007135!1.23e-14!57;UBERON:0002616!7.41e-14!59;UBERON:0002780!1.40e-13!41;UBERON:0001890!1.40e-13!41;UBERON:0006240!1.40e-13!41;UBERON:0003080!4.79e-13!42;UBERON:0002020!7.69e-12!34;UBERON:0003528!7.69e-12!34;UBERON:0001869!8.15e-12!32;UBERON:0003075!9.66e-12!86;UBERON:0007284!9.66e-12!86;UBERON:0002346!1.55e-11!90;UBERON:0001893!4.46e-11!34;UBERON:0002791!1.22e-10!33;UBERON:0003056!3.24e-10!61;UBERON:0000956!2.12e-09!25;UBERON:0000203!2.12e-09!25;UBERON:0002619!2.28e-08!22;UBERON:0000153!3.92e-08!129;UBERON:0007811!3.92e-08!129;UBERON:0001950!8.33e-08!20;UBERON:0000033!1.50e-07!123;UBERON:0000924!2.15e-07!173;UBERON:0006601!2.15e-07!173;UBERON:0004121!2.20e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;5.03e-11;32!UBERON:0003528;1.43e-10;34!UBERON:0002020;1.43e-10;34!UBERON:0002791;1.64e-10;32!UBERON:0002780;9.12e-10;41!UBERON:0001890;9.12e-10;41!UBERON:0001893;9.46e-10;34!UBERON:0000956;2.72e-09;25!UBERON:0000203;2.72e-09;25!UBERON:0000073;1.76e-08;53!UBERON:0002616;1.76e-08;53!UBERON:0002619;3.62e-08;22!UBERON:0001017;8.29e-08;75!UBERON:0001950;1.36e-07;20!UBERON:0000955;2.01e-07;68!UBERON:0001016;8.72e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.72e-20,89;UBERON:0001017,9.20e-20,81;UBERON:0000955,3.71e-16,68;UBERON:0006238,3.71e-16,68;UBERON:0001049,2.80e-15,56;UBERON:0005068,2.80e-15,56;UBERON:0006241,2.80e-15,56;UBERON:0007135,2.80e-15,56;UBERON:0000073,1.68e-14,53;UBERON:0002616,1.68e-14,53;UBERON:0002780,1.03e-13,41;UBERON:0001890,1.03e-13,41;UBERON:0003080,1.03e-13,41;UBERON:0006240,1.03e-13,41;UBERON:0003075,1.63e-12,82;UBERON:0007284,1.63e-12,82;UBERON:0002346,2.75e-12,86;UBERON:0003528,5.92e-12,34;UBERON:0002020,5.92e-12,34;UBERON:0001869,6.28e-12,32;UBERON:0002791,2.62e-11,32;UBERON:0001893,3.50e-11,34;UBERON:0003056,5.01e-11,61;UBERON:0000956,1.74e-09,25;UBERON:0000203,1.74e-09,25;UBERON:0011216,5.18e-09,223;UBERON:0002619,1.91e-08,22;UBERON:0001950,7.10e-08,20;UBERON:0004121,2.92e-07,171;UBERON:0000924,2.92e-07,171;UBERON:0006601,2.92e-07,171;UBERON:0010371,6.35e-07,104 | |||
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| ||
|short_description=p1@DZIP3 | |||
}} | }} |
Latest revision as of 11:26, 19 September 2015
Short description: | p1@DZIP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_DZIP3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000486815_5end |
EntrezGene: | DZIP3 |
HGNC: | 30938 |
UniProt: | C9JRX4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 6.24e-12 | 24 |
pro-B cell | 6.24e-12 | 24 |
lymphocyte | 7.77e-11 | 53 |
common lymphoid progenitor | 7.77e-11 | 53 |
lymphoid lineage restricted progenitor cell | 2.04e-10 | 52 |
B cell | 2.57e-07 | 14 |
nongranular leukocyte | 2.93e-07 | 115 |
leukocyte | 5.75e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.72e-20 | 89 |
central nervous system | 9.20e-20 | 81 |
brain | 3.71e-16 | 68 |
future brain | 3.71e-16 | 68 |
neural tube | 2.80e-15 | 56 |
neural rod | 2.80e-15 | 56 |
future spinal cord | 2.80e-15 | 56 |
neural keel | 2.80e-15 | 56 |
regional part of nervous system | 1.68e-14 | 53 |
regional part of brain | 1.68e-14 | 53 |
regional part of forebrain | 1.03e-13 | 41 |
forebrain | 1.03e-13 | 41 |
anterior neural tube | 1.03e-13 | 41 |
future forebrain | 1.03e-13 | 41 |
neural plate | 1.63e-12 | 82 |
presumptive neural plate | 1.63e-12 | 82 |
neurectoderm | 2.75e-12 | 86 |
brain grey matter | 5.92e-12 | 34 |
gray matter | 5.92e-12 | 34 |
cerebral hemisphere | 6.28e-12 | 32 |
regional part of telencephalon | 2.62e-11 | 32 |
telencephalon | 3.50e-11 | 34 |
pre-chordal neural plate | 5.01e-11 | 61 |
cerebral cortex | 1.74e-09 | 25 |
pallium | 1.74e-09 | 25 |
organ system subdivision | 5.18e-09 | 223 |
regional part of cerebral cortex | 1.91e-08 | 22 |
neocortex | 7.10e-08 | 20 |
ectoderm-derived structure | 2.92e-07 | 171 |
ectoderm | 2.92e-07 | 171 |
presumptive ectoderm | 2.92e-07 | 171 |
ecto-epithelium | 6.35e-07 | 104 |