FFCP PHASE1:Hg19::chr2:64068078..64068114,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:64068078..64068114,+
|short_description=p4@UGP2
|description=CAGE_peak_4_at_UGP2_5end
|association_with_transcript=0bp_to_ENST00000466642,ENST00000467648,E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7360 | |EntrezGene=7360 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12527 | |HGNC=12527 | ||
|TSSclassifier=strong | |||
|UniProt=F8WC70,C9JTZ5,C9J6Q0,F2Z3H1,Q16851 | |UniProt=F8WC70,C9JTZ5,C9J6Q0,F2Z3H1,Q16851 | ||
|association_with_transcript=0bp_to_ENST00000466642,ENST00000467648,ENST00000482668,ENST00000484142,ENST00000497510,NM_001001521,uc002scl.2_5end | |||
|cluster_id=chr2:64068078..64068114,+ | |||
|description=CAGE_peak_4_at_UGP2_5end | |||
|id=chr2:64068078..64068114,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.57e-52!115;UBERON:0001049!3.61e-16!57;UBERON:0005068!3.61e-16!57;UBERON:0006241!3.61e-16!57;UBERON:0007135!3.61e-16!57;UBERON:0002780!3.01e-15!41;UBERON:0001890!3.01e-15!41;UBERON:0006240!3.01e-15!41;UBERON:0003080!4.85e-15!42;UBERON:0002616!1.48e-12!59;UBERON:0002020!2.73e-12!34;UBERON:0003528!2.73e-12!34;UBERON:0001893!4.20e-12!34;UBERON:0001869!1.00e-11!32;UBERON:0002791!1.64e-11!33;UBERON:0000955!2.49e-10!69;UBERON:0006238!2.49e-10!69;UBERON:0003075!7.49e-10!86;UBERON:0007284!7.49e-10!86;UBERON:0002619!3.03e-09!22;UBERON:0001017!3.51e-09!82;UBERON:0002346!8.10e-09!90;UBERON:0005743!1.81e-08!86;UBERON:0001950!2.12e-08!20;UBERON:0000153!2.61e-08!129;UBERON:0007811!2.61e-08!129;UBERON:0000956!3.47e-08!25;UBERON:0000203!3.47e-08!25;UBERON:0000033!1.36e-07!123;UBERON:0003056!6.49e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;1.14e-13;114!UBERON:0002780;3.94e-11;41!UBERON:0001890;3.94e-11;41!UBERON:0001893;4.05e-11;34!UBERON:0001869;6.94e-11;32!UBERON:0003528;7.41e-11;34!UBERON:0002020;7.41e-11;34!UBERON:0002791;1.47e-10;32!UBERON:0002619;1.87e-09;22!UBERON:0000073;3.77e-09;53!UBERON:0002616;3.77e-09;53!UBERON:0001950;1.31e-08;20!UBERON:0000956;2.14e-08;25!UBERON:0000203;2.14e-08;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.85e-51,114;UBERON:0001049,2.87e-16,56;UBERON:0005068,2.87e-16,56;UBERON:0006241,2.87e-16,56;UBERON:0007135,2.87e-16,56;UBERON:0000073,2.61e-15,53;UBERON:0002616,2.61e-15,53;UBERON:0002780,3.00e-15,41;UBERON:0001890,3.00e-15,41;UBERON:0003080,3.00e-15,41;UBERON:0006240,3.00e-15,41;UBERON:0003528,2.72e-12,34;UBERON:0002020,2.72e-12,34;UBERON:0001893,4.19e-12,34;UBERON:0001869,1.00e-11,32;UBERON:0002791,2.72e-11,32;UBERON:0000955,2.52e-10,68;UBERON:0006238,2.52e-10,68;UBERON:0002619,3.03e-09,22;UBERON:0001017,3.88e-09,81;UBERON:0003075,5.45e-09,82;UBERON:0007284,5.45e-09,82;UBERON:0001950,2.12e-08,20;UBERON:0000956,3.47e-08,25;UBERON:0000203,3.47e-08,25;UBERON:0002346,5.34e-08,86;UBERON:0011216,1.41e-07,223;UBERON:0001016,7.25e-07,89;UBERON:0010314,7.65e-07,132;UBERON:0003056,8.24e-07,61 | |||
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| ||
|short_description=p4@UGP2 | |||
}} | }} |
Latest revision as of 22:43, 17 September 2015
Short description: | p4@UGP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_UGP2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000466642, ENST00000467648, ENST00000482668, ENST00000484142, ENST00000497510, NM_001001521, uc002scl.2_5end |
EntrezGene: | UGP2 |
HGNC: | 12527 |
UniProt: | F8WC70C9JTZ5C9J6Q0F2Z3H1Q16851 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 2.85e-51 | 114 |
neural tube | 2.87e-16 | 56 |
neural rod | 2.87e-16 | 56 |
future spinal cord | 2.87e-16 | 56 |
neural keel | 2.87e-16 | 56 |
regional part of nervous system | 2.61e-15 | 53 |
regional part of brain | 2.61e-15 | 53 |
regional part of forebrain | 3.00e-15 | 41 |
forebrain | 3.00e-15 | 41 |
anterior neural tube | 3.00e-15 | 41 |
future forebrain | 3.00e-15 | 41 |
brain grey matter | 2.72e-12 | 34 |
gray matter | 2.72e-12 | 34 |
telencephalon | 4.19e-12 | 34 |
cerebral hemisphere | 1.00e-11 | 32 |
regional part of telencephalon | 2.72e-11 | 32 |
brain | 2.52e-10 | 68 |
future brain | 2.52e-10 | 68 |
regional part of cerebral cortex | 3.03e-09 | 22 |
central nervous system | 3.88e-09 | 81 |
neural plate | 5.45e-09 | 82 |
presumptive neural plate | 5.45e-09 | 82 |
neocortex | 2.12e-08 | 20 |
cerebral cortex | 3.47e-08 | 25 |
pallium | 3.47e-08 | 25 |
neurectoderm | 5.34e-08 | 86 |
organ system subdivision | 1.41e-07 | 223 |
nervous system | 7.25e-07 | 89 |
structure with developmental contribution from neural crest | 7.65e-07 | 132 |
pre-chordal neural plate | 8.24e-07 | 61 |