FFCP PHASE1:Hg19::chr2:55277578..55277596,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr2:55277578..55277596,-
|short_description=p1@RTN4
|description=CAGE_peak_1_at_RTN4_5end
|association_with_transcript=-66bp_to_ENST00000402434_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57142 | |EntrezGene=57142 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14085 | |HGNC=14085 | ||
|TSSclassifier=strong | |||
|UniProt=F8W914 | |UniProt=F8W914 | ||
|association_with_transcript=-66bp_to_ENST00000402434_5end | |||
|cluster_id=chr2:55277578..55277596,- | |||
|coexpression_cluster_id=C1911 | |||
|description=CAGE_peak_1_at_RTN4_5end | |||
|id=chr2:55277578..55277596,- | |||
|ontology_enrichment_celltype=CL:0000055!3.51e-24!180;CL:0000057!6.92e-21!75;CL:0002371!2.05e-20!591;CL:0000144!1.02e-17!625;CL:0000222!8.28e-15!119;CL:0000548!2.94e-14!679;CL:0000004!2.94e-14!679;CL:0000255!2.94e-14!679;CL:0000012!1.89e-13!682;CL:0000680!1.19e-11!57;CL:0000056!1.19e-11!57;CL:0000355!1.19e-11!57;CL:0000183!3.49e-11!59;CL:0000192!7.20e-11!42;CL:0000514!7.20e-11!42;CL:0000187!1.09e-10!54;CL:0000048!5.64e-10!430;CL:0000723!6.65e-10!436;CL:0000359!4.63e-09!32;CL:0000220!8.14e-09!246;CL:0000136!1.07e-08!15;CL:0000034!1.79e-08!444;CL:0000393!1.81e-08!60;CL:0000211!1.81e-08!60;CL:0002321!2.28e-08!248;CL:0002620!2.63e-08!23;CL:0000003!3.15e-08!722 | |||
|ontology_enrichment_celltype_v019=CL:0000057;8.95e-09;73!CL:0000359;1.63e-08;32!CL:0000192;1.67e-08;43!CL:0000136;2.36e-08;13!CL:0002620;2.65e-08;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.15e-21,76;CL:0000222,1.34e-15,121;CL:0000680,3.48e-12,58;CL:0000056,3.48e-12,58;CL:0000355,3.48e-12,58;CL:0000192,1.96e-11,43;CL:0000514,1.96e-11,43;CL:0000187,3.25e-11,55;CL:0000048,3.19e-10,427;CL:0000723,3.78e-10,433;CL:0000359,4.63e-09,32;CL:0000393,6.26e-09,61;CL:0000211,6.26e-09,61;CL:0002321,7.10e-09,250;CL:0000136,1.07e-08,15;CL:0000034,1.08e-08,441;CL:0002620,2.63e-08,23 | |||
|ontology_enrichment_development_v019=CL:0000514;1.67e-08;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!5.11e-19!659;UBERON:0000467!2.25e-18!625;UBERON:0000480!5.68e-18!626;UBERON:0000475!2.06e-14!365;UBERON:0000914!4.70e-14!83;UBERON:0002329!4.70e-14!83;UBERON:0003077!4.70e-14!83;UBERON:0003059!4.70e-14!83;UBERON:0007282!4.70e-14!83;UBERON:0009618!4.70e-14!83;UBERON:0007285!4.70e-14!83;UBERON:0000486!5.29e-13!82;UBERON:0000923!1.40e-12!604;UBERON:0005291!1.40e-12!604;UBERON:0006598!1.40e-12!604;UBERON:0002532!1.40e-12!604;UBERON:0002050!2.13e-12!605;UBERON:0005423!2.13e-12!605;UBERON:0005256!5.74e-12!143;UBERON:0000119!1.69e-11!312;UBERON:0000922!2.96e-11!612;UBERON:0004290!3.51e-11!70;UBERON:0000483!3.52e-11!309;UBERON:0004872!4.24e-11!84;UBERON:0002049!6.03e-11!79;UBERON:0007798!6.03e-11!79;UBERON:0002204!6.21e-11!167;UBERON:0003102!7.71e-11!95;UBERON:0001637!1.89e-10!42;UBERON:0003509!1.89e-10!42;UBERON:0004572!1.89e-10!42;UBERON:0000055!2.36e-10!69;UBERON:0001981!2.86e-10!60;UBERON:0007500!2.86e-10!60;UBERON:0004537!2.86e-10!60;UBERON:0006965!2.86e-10!60;UBERON:0003914!4.00e-10!118;UBERON:0004111!4.10e-10!241;UBERON:0004573!6.55e-10!33;UBERON:0004571!6.55e-10!33;UBERON:0000477!1.37e-09!286;UBERON:0001134!1.40e-09!61;UBERON:0002036!1.40e-09!61;UBERON:0003082!1.40e-09!61;UBERON:0002100!1.90e-09!216;UBERON:0002385!3.86e-09!63;UBERON:0001015!3.86e-09!63;UBERON:0000383!3.86e-09!63;UBERON:0000062!5.44e-09!511;UBERON:0000926!6.91e-09!448;UBERON:0004120!6.91e-09!448;UBERON:0006603!6.91e-09!448;UBERON:0003081!4.14e-08!216;UBERON:0000025!1.88e-07!194;UBERON:0002199!2.08e-07!45;UBERON:0002416!2.08e-07!45;UBERON:0004535!2.57e-07!110;UBERON:0000490!4.78e-07!138;UBERON:0000479!6.38e-07!787;UBERON:0001009!9.03e-07!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;3.49e-09;33!UBERON:0004571;3.49e-09;33!UBERON:0001637;6.23e-08;42!UBERON:0003509;6.23e-08;42!UBERON:0004572;6.23e-08;42 | |||
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| ||
|short_description=p1@RTN4 | |||
}} | }} |
Latest revision as of 17:02, 17 September 2015
Short description: | p1@RTN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RTN4_5end |
Coexpression cluster: | C1911_Smooth_mesenchymal_Fibroblast_leiomyoma_Preadipocyte_Adipocyte_osteoclastoma |
Association with transcript: | -66bp_to_ENST00000402434_5end |
EntrezGene: | RTN4 |
HGNC: | 14085 |
UniProt: | F8W914 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.15e-21 | 76 |
mesodermal cell | 1.34e-15 | 121 |
muscle precursor cell | 3.48e-12 | 58 |
myoblast | 3.48e-12 | 58 |
multi-potent skeletal muscle stem cell | 3.48e-12 | 58 |
smooth muscle cell | 1.96e-11 | 43 |
smooth muscle myoblast | 1.96e-11 | 43 |
muscle cell | 3.25e-11 | 55 |
multi fate stem cell | 3.19e-10 | 427 |
somatic stem cell | 3.78e-10 | 433 |
vascular associated smooth muscle cell | 4.63e-09 | 32 |
electrically responsive cell | 6.26e-09 | 61 |
electrically active cell | 6.26e-09 | 61 |
embryonic cell | 7.10e-09 | 250 |
fat cell | 1.07e-08 | 15 |
stem cell | 1.08e-08 | 441 |
skin fibroblast | 2.63e-08 | 23 |