FFCP PHASE1:Hg19::chr2:29338236..29338439,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:29338236..29338439,+
|short_description=p1@CLIP4
|description=CAGE_peak_1_at_CLIP4_5end
|association_with_transcript=0bp_to_ENST00000320081,ENST00000379543...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=79745 | |EntrezGene=79745 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26108 | |HGNC=26108 | ||
|TSSclassifier=strong | |||
|UniProt=Q8N3C7 | |UniProt=Q8N3C7 | ||
|association_with_transcript=0bp_to_ENST00000320081,ENST00000379543,NM_024692,uc002rmv.2_5end | |||
|cluster_id=chr2:29338236..29338439,+ | |||
|description=CAGE_peak_1_at_CLIP4_5end | |||
|id=chr2:29338236..29338439,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.69e-25!115;UBERON:0001049!9.55e-19!57;UBERON:0005068!9.55e-19!57;UBERON:0006241!9.55e-19!57;UBERON:0007135!9.55e-19!57;UBERON:0000153!2.44e-17!129;UBERON:0007811!2.44e-17!129;UBERON:0000955!7.52e-17!69;UBERON:0006238!7.52e-17!69;UBERON:0000033!1.61e-16!123;UBERON:0002616!1.75e-16!59;UBERON:0003075!2.59e-16!86;UBERON:0007284!2.59e-16!86;UBERON:0003080!1.31e-15!42;UBERON:0002780!4.73e-15!41;UBERON:0001890!4.73e-15!41;UBERON:0006240!4.73e-15!41;UBERON:0000073!4.99e-15!94;UBERON:0001016!4.99e-15!94;UBERON:0002346!9.31e-15!90;UBERON:0005743!1.60e-13!86;UBERON:0004121!2.18e-13!169;UBERON:0001017!6.55e-13!82;UBERON:0000924!1.67e-12!173;UBERON:0006601!1.67e-12!173;UBERON:0003056!2.35e-12!61;UBERON:0000475!3.45e-12!365;UBERON:0002020!3.43e-11!34;UBERON:0003528!3.43e-11!34;UBERON:0001893!3.62e-11!34;UBERON:0002791!1.17e-10!33;UBERON:0000062!2.46e-10!511;UBERON:0001869!4.33e-10!32;UBERON:0000467!7.31e-09!625;UBERON:0000480!1.31e-08!626;UBERON:0000468!3.74e-08!659;UBERON:0002619!5.37e-08!22;UBERON:0001950!5.25e-07!20;UBERON:0002308!5.38e-07!9;UBERON:0000125!5.38e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;5.05e-11;41!UBERON:0001890;5.05e-11;41!UBERON:0000073;2.38e-10;53!UBERON:0002616;2.38e-10;53!UBERON:0001893;1.69e-09;34!UBERON:0003528;1.88e-09;34!UBERON:0002020;1.88e-09;34!UBERON:0002791;4.54e-09;32!UBERON:0001869;5.28e-09;32!UBERON:0000955;5.39e-08;68!UBERON:0002619;5.50e-08;22!UBERON:0001017;1.77e-07;75!UBERON:0007023;2.45e-07;114!UBERON:0001950;5.38e-07;20!UBERON:0000125;5.40e-07;9!UBERON:0002308;5.40e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.29e-25,114;UBERON:0010314,3.01e-19,132;UBERON:0001049,3.35e-18,56;UBERON:0005068,3.35e-18,56;UBERON:0006241,3.35e-18,56;UBERON:0007135,3.35e-18,56;UBERON:0000073,4.00e-17,53;UBERON:0002616,4.00e-17,53;UBERON:0003075,2.06e-16,82;UBERON:0007284,2.06e-16,82;UBERON:0000955,2.42e-16,68;UBERON:0006238,2.42e-16,68;UBERON:0010371,6.78e-16,104;UBERON:0002780,4.62e-15,41;UBERON:0001890,4.62e-15,41;UBERON:0003080,4.62e-15,41;UBERON:0006240,4.62e-15,41;UBERON:0002346,8.43e-15,86;UBERON:0001016,6.55e-14,89;UBERON:0001017,2.00e-12,81;UBERON:0003056,2.05e-12,61;UBERON:0004121,2.21e-12,171;UBERON:0000924,2.21e-12,171;UBERON:0006601,2.21e-12,171;UBERON:0003528,3.38e-11,34;UBERON:0002020,3.38e-11,34;UBERON:0001893,3.56e-11,34;UBERON:0002791,3.81e-10,32;UBERON:0001869,4.27e-10,32;UBERON:0002619,5.31e-08,22;UBERON:0001950,5.20e-07,20;UBERON:0000125,5.33e-07,9;UBERON:0002308,5.33e-07,9 | |||
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| ||
|short_description=p1@CLIP4 | |||
}} | }} |
Latest revision as of 20:36, 16 September 2015
Short description: | p1@CLIP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CLIP4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000320081, ENST00000379543, NM_024692, uc002rmv.2_5end |
EntrezGene: | CLIP4 |
HGNC: | 26108 |
UniProt: | Q8N3C7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 4.29e-25 | 114 |
structure with developmental contribution from neural crest | 3.01e-19 | 132 |
neural tube | 3.35e-18 | 56 |
neural rod | 3.35e-18 | 56 |
future spinal cord | 3.35e-18 | 56 |
neural keel | 3.35e-18 | 56 |
regional part of nervous system | 4.00e-17 | 53 |
regional part of brain | 4.00e-17 | 53 |
neural plate | 2.06e-16 | 82 |
presumptive neural plate | 2.06e-16 | 82 |
brain | 2.42e-16 | 68 |
future brain | 2.42e-16 | 68 |
ecto-epithelium | 6.78e-16 | 104 |
regional part of forebrain | 4.62e-15 | 41 |
forebrain | 4.62e-15 | 41 |
anterior neural tube | 4.62e-15 | 41 |
future forebrain | 4.62e-15 | 41 |
neurectoderm | 8.43e-15 | 86 |
nervous system | 6.55e-14 | 89 |
central nervous system | 2.00e-12 | 81 |
pre-chordal neural plate | 2.05e-12 | 61 |
ectoderm-derived structure | 2.21e-12 | 171 |
ectoderm | 2.21e-12 | 171 |
presumptive ectoderm | 2.21e-12 | 171 |
brain grey matter | 3.38e-11 | 34 |
gray matter | 3.38e-11 | 34 |
telencephalon | 3.56e-11 | 34 |
regional part of telencephalon | 3.81e-10 | 32 |
cerebral hemisphere | 4.27e-10 | 32 |
regional part of cerebral cortex | 5.31e-08 | 22 |
neocortex | 5.20e-07 | 20 |
neural nucleus | 5.33e-07 | 9 |
nucleus of brain | 5.33e-07 | 9 |