FFCP PHASE1:Hg19::chr2:29337010..29337046,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:29337010..29337046,+
|short_description=p2@CLIP4
|description=CAGE_peak_2_at_CLIP4_5end
|association_with_transcript=148bp_to_ENST00000402240,ENST000004044...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=79745 | |EntrezGene=79745 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26108 | |HGNC=26108 | ||
|TSSclassifier=strong | |||
|UniProt=A8K6D0,Q8N3C7 | |UniProt=A8K6D0,Q8N3C7 | ||
|association_with_transcript=148bp_to_ENST00000402240,ENST00000404424,uc010ezm.1_5end | |||
|cluster_id=chr2:29337010..29337046,+ | |||
|description=CAGE_peak_2_at_CLIP4_5end | |||
|id=chr2:29337010..29337046,+ | |||
|ontology_enrichment_celltype=CL:0002009!1.14e-23!65;CL:0002194!3.47e-23!63;CL:0000576!3.47e-23!63;CL:0000040!3.47e-23!63;CL:0000559!3.47e-23!63;CL:0000839!7.76e-23!70;CL:0000557!1.90e-22!71;CL:0002057!1.46e-21!42;CL:0000766!1.59e-20!76;CL:0000860!6.04e-20!45;CL:0000063!1.16e-10!578;CL:0002031!3.25e-09!124;CL:0002076!3.57e-09!43;CL:0002087!1.60e-08!119;CL:0000738!1.19e-07!140;CL:0000763!3.07e-07!112;CL:0000049!3.07e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000473;2.95e-21;39!CL:0000234;2.95e-21;39!CL:0000860;3.61e-20;33!CL:0002057;3.61e-20;33!CL:0000576;1.20e-18;48!CL:0000766;5.76e-14;69!CL:0002076;1.24e-07;42!CL:0000235;9.83e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.01e-33,48;CL:0000234,1.01e-33,48;CL:0002194,4.46e-31,59;CL:0000576,4.46e-31,59;CL:0000040,4.46e-31,59;CL:0000559,4.46e-31,59;CL:0002009,5.00e-31,61;CL:0000839,7.26e-29,66;CL:0000557,9.11e-29,67;CL:0000860,1.86e-28,42;CL:0002057,1.86e-28,42;CL:0000766,7.16e-28,72;CL:0000763,6.23e-13,108;CL:0000049,6.23e-13,108;CL:0002031,8.97e-11,120;CL:0002087,1.01e-10,115;CL:0002076,6.09e-10,42;CL:0000738,1.41e-09,136;CL:0000066,2.58e-09,253;CL:0002393,4.94e-08,9;CL:0002397,4.94e-08,9;CL:0000223,2.84e-07,58 | |||
|ontology_enrichment_development_v019=CL:0002057;8.71e-21;42 | |||
|ontology_enrichment_disease=DOID:1749!7.53e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.69e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.17e-10,14;DOID:305,4.90e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0002371!4.17e-20!80;UBERON:0001474!6.11e-17!86;UBERON:0002390!4.12e-16!102;UBERON:0003061!4.12e-16!102;UBERON:0004765!1.56e-15!101;UBERON:0001434!1.56e-15!101;UBERON:0002193!6.56e-13!112;UBERON:0000062!1.04e-11!511;UBERON:0002405!1.41e-11!115;UBERON:0000926!4.00e-07!448;UBERON:0004120!4.00e-07!448;UBERON:0006603!4.00e-07!448;UBERON:0002204!7.36e-07!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.96e-25,76;UBERON:0001474,1.63e-21,82;UBERON:0004765,1.29e-20,90;UBERON:0002390,7.19e-18,98;UBERON:0003061,7.19e-18,98;UBERON:0002405,3.43e-17,93;UBERON:0001434,5.47e-17,100;UBERON:0002193,7.24e-15,108 | |||
|phase1_expression=3.27021082687002,1.2846031433459,5.63817616383885,1.0007329835313,1.78784437770915,3.48935409640147,0,0,0,0.245733936501509,0,0.218441372130172,0,0,0,0.672325146451775,1.20538905604795,2.19093027116212,0,0,0,0,0,0.136874425072884,0,0.0764134057479513,0.0821005894499457,0.157421562627358,9.4407426443737,5.75744097145819,7.1215416725395,2.75826367343678,1.8072355126695,6.65557218300218,0.232401601740905,0.142169232487422,0,2.21598163412751,2.60707781711184,2.38711957787437,15.2262522483149,23.6442376193855,18.5454408696614,13.8128326840586,5.66813915533214,10.4311146310761,13.248455103624,5.34518254428373,7.12324653058738,2.8769239232215,2.56160706529101,9.22280696565482,12.7555901872549,4.51839278508678,9.47985406160392,19.2007186333457,10.643339852256,12.8092386133698,12.8555234795779,6.41858054152187,10.2293940127847,3.95821560224059,5.78444607102732,6.39337125799041,8.9964863974861,1.13477044938228,3.11411124497787,2.00998932205395,3.12889751052121,8.25317609879443,2.42159801053347,3.68277635987565,4.43047342417238,17.3229334775792,14.2444880976579,14.0471292490612,3.48218756554135,4.20495299956218,3.05378614724452,28.5012743741249,26.455918067479,36.7154949066914,0,0,0.889509253863555,1.28019066769952,0,1.14950487990897,1.32208974556972,2.86216126360609,0,1.17447437874188,0,0,1.68152568894461,0.263384084775077,0.196709770113833,0,0.205601498999509,0,0,0,0,0.334231370655521,0,0,0,0.512365278902701,0.260118695119756,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0.301150238155546,0,0,0.473554504088034,0.821127996921047,0,0,0,0,0,0.255725123687061,0.361439152384566,0,0.144846518960824,0,0,0.0945348171640679,0,0.087834785693126,1.17881167947941,0,0.370784442784429,0.97364218096405,1.39303789839414,1.99436940778298,0,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,5.96366342034382,0.379891534993739,2.78059279707759,1.14734648299525,0,1.12135520028461,0,2.4666754841716,0,1.0776853765575,0,0,0,0.234321431833797,0.312160076830321,0.570471821544449,0.149448680551801,0.469737994575059,0,0.140450806702248,0.204154171254893,0.491337269247072,0.413303124703062,0,0.247266929278557,0,0,0.168336113954066,0.250237039743928,0.554128230968366,0,0.919463387397059,0.45071417671979,0.226864366320042,1.61450672119976,1.49490172172997,0,1.20036438433761,0.206105058476878,7.21393512127762,2.79175284497385,0.337552664482532,0.0974370051611986,0.757301322732344,0.276149695926898,0.161646056818812,1.77504796258307,0.906768884048762,0.339121184620975,16.8136942252068,8.18238361772504,6.02289650316908,0,0,0,0,0,0.36497735907583,0,0,0,1.39310378409594,0.721879481669586,0.118306800039844,0,0,0,0,0,0,0.392442930250692,0,0,0,0,0,0,0,0.590789906681404,0,0.614942192715568,0.343135620597051,4.17051084552777,7.86812272803337,0.904760751704678,0.648119116109707,0.325808305310325,0,0,0,0.117408694235822,0,0,0,0,0,23.6368325843901,5.38209809820247,9.66102554876734,8.43604505880993,4.03157107677263,3.54437743105966,7.6124744297421,4.94077695473735,8.81780162079986,0,0.44024217006613,2.28060927094849,0.288239906833923,4.92345490362882,0,0,0,0,0,0.300343057843917,0.285826432630578,0,0,0,0.387815147273333,0,0,0.797814349754612,1.04007436911366,0,0,0,2.85955987316295,0.542621605391443,0,0.325736184293735,2.48774364119782,0,3.01439377059586,0,1.69954085009497,19.4598049025905,13.0586843772353,29.5167515276244,0.958499421966331,1.14861935834114,0,0.289562613335158,0.205476322550383,0.179060963239896,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0,2.28767947683888,1.60586089917446,8.98903765693428,7.1456263145555,0.601892199455438,0,0,0,0.184369168541703,1.99832313276591,0,0,1.03384013061444,3.45142721309787,0.426910231213777,0,1.66435439510497,0,4.46594054073798,5.98501695823444,3.92924132206303,9.09787959715477,3.58195074346692,0.804269605718038,0,0,0.355123450626254,0.164254312027618,0,0.116210378459959,0.120859449591622,1.80455823272956,18.692440753987,1.49258782613989,1.0925470080403,0.655622074797121,6.31679458070376,2.15642943892361,0,1.46139224653261,1.58327443339314,0,0,0,0,0,0,0.764628819135115,0.831076008928724,0.895499018888713,0.657779629937804,1.0457418040996,1.53870075069834,1.64007322849853,3.25378394664303,1.64865618636356,0,0,2.87132768998086,0.650060246036521,3.21367859688319,0.96670718292122,0,0.15350367472613,0.275673144969061,0.214840489736547,0.145016693914229,0,0.979352392114111,8.92538542949282,1.72971060628596,7.40153732468588,6.67641353646629,0.464845549297286,3.46293581513704,0,0,0.532306030317022,0,0.74129687641568,0.429374660225974,0,0.316379424718726,0.762520775695299,0,0,0.318203247925937,0,0.179872457583315,0,0.235624804691373,0.606547444719948,0,0,0,0.974853958525138,0,0.409499734223957,0.848432591722276,0,0,0,0,0,0,0.202910376962704,0.30982349809975,0,0,0.0982490410131212,0,0.709522128141196,0.422215270595328,1.31717957183961,0,0,4.61866141082458,2.01090682660736,6.53345909167936,2.16530741786592,0,0,0,0.459446800413919,0,1.52927441428475,1.70894156152249,0.9529271018311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| ||
|short_description=p2@CLIP4 | |||
}} | }} |
Latest revision as of 20:30, 16 September 2015
Short description: | p2@CLIP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CLIP4_5end |
Coexpression cluster: | NA |
Association with transcript: | 148bp_to_ENST00000402240, ENST00000404424, uc010ezm.1_5end |
EntrezGene: | CLIP4 |
HGNC: | 26108 |
UniProt: | A8K6D0Q8N3C7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.01e-33 | 48 |
phagocyte | 1.01e-33 | 48 |
monopoietic cell | 4.46e-31 | 59 |
monocyte | 4.46e-31 | 59 |
monoblast | 4.46e-31 | 59 |
promonocyte | 4.46e-31 | 59 |
macrophage dendritic cell progenitor | 5.00e-31 | 61 |
myeloid lineage restricted progenitor cell | 7.26e-29 | 66 |
granulocyte monocyte progenitor cell | 9.11e-29 | 67 |
classical monocyte | 1.86e-28 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.86e-28 | 42 |
myeloid leukocyte | 7.16e-28 | 72 |
myeloid cell | 6.23e-13 | 108 |
common myeloid progenitor | 6.23e-13 | 108 |
hematopoietic lineage restricted progenitor cell | 8.97e-11 | 120 |
nongranular leukocyte | 1.01e-10 | 115 |
endo-epithelial cell | 6.09e-10 | 42 |
leukocyte | 1.41e-09 | 136 |
epithelial cell | 2.58e-09 | 253 |
intermediate monocyte | 4.94e-08 | 9 |
CD14-positive, CD16-positive monocyte | 4.94e-08 | 9 |
endodermal cell | 2.84e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 5.96e-25 | 76 |
bone element | 1.63e-21 | 82 |
skeletal element | 1.29e-20 | 90 |
hematopoietic system | 7.19e-18 | 98 |
blood island | 7.19e-18 | 98 |
immune system | 3.43e-17 | 93 |
skeletal system | 5.47e-17 | 100 |
hemolymphoid system | 7.24e-15 | 108 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.17e-10 | 14 |
carcinoma | 4.90e-07 | 106 |