Personal tools

FFCP PHASE1:Mm9::chr9:40263737..40263761,-: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{FFCP
{{FFCP
|DHSsupport=NA
|DPIdataset=NA
|EntrezGene=235283
|EntrezGene=235283
|HGNC=
|HGNC=
|MCL_coexpression_id=2493
|MCL_coexpression_id=2493
|TSSclassifier=NA
|UniProt=Q80TI0
|UniProt=Q80TI0
|association_with_transcript=-388bp_to_ENSMUST00000045682,NM_172768,uc009ozq.1_5end
|association_with_transcript=-388bp_to_ENSMUST00000045682,NM_172768,uc009ozq.1_5end
|cluster_id=chr9:40263737..40263761,-
|description=CAGE_peak_3_at_Gramd1b_5end
|description=CAGE_peak_3_at_Gramd1b_5end
|id=chr9:40263737..40263761,-
|id=chr9:40263737..40263761,-
|ontology_enrichment_celltype=
|ontology_enrichment_celltype=
|ontology_enrichment_celltype_v019_2=CL:0000893,4.31e-09,6;CL:0002489,4.31e-09,6;CL:0000898,4.31e-09,6;CL:0000809,4.31e-09,6;CL:0000810,4.31e-09,6;CL:0000895,4.31e-09,6;CL:0000808,4.31e-09,6;CL:0000894,4.31e-09,6;CL:0000806,4.31e-09,6;CL:0000807,4.31e-09,6;CL:0000805,4.31e-09,6;CL:0002425,4.31e-09,6;CL:0002436,4.31e-09,6;CL:0002427,4.31e-09,6;CL:0002428,4.31e-09,6;CL:0002429,4.31e-09,6;CL:0002433,4.31e-09,6;CL:0002431,4.31e-09,6;CL:0002432,4.31e-09,6;CL:0000624,1.17e-08,8;CL:0000791,1.57e-07,9;CL:0000789,1.57e-07,9;CL:0002420,1.57e-07,9;CL:0002419,1.57e-07,9;CL:0000790,1.57e-07,9
|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0000991!2.58e-09!18;UBERON:0005564!2.58e-09!18;UBERON:0004176!9.96e-09!17;UBERON:0009196!9.96e-09!17;UBERON:0009117!9.96e-09!17;UBERON:0003135!3.39e-08!15;UBERON:0000473!5.16e-08!14;UBERON:0003101!3.52e-07!16;UBERON:0000079!3.52e-07!16;UBERON:0003133!3.80e-07!24;UBERON:0005156!8.96e-07!26;UBERON:0000990!8.96e-07!26
|ontology_enrichment_uberon=UBERON:0000991!2.58e-09!18;UBERON:0005564!2.58e-09!18;UBERON:0004176!9.96e-09!17;UBERON:0009196!9.96e-09!17;UBERON:0009117!9.96e-09!17;UBERON:0003135!3.39e-08!15;UBERON:0000473!5.16e-08!14;UBERON:0003101!3.52e-07!16;UBERON:0000079!3.52e-07!16;UBERON:0003133!3.80e-07!24;UBERON:0005156!8.96e-07!26;UBERON:0000990!8.96e-07!26
|ontology_enrichment_uberon_v019_2=UBERON:0000926,2.27e-14,120;UBERON:0004120,2.27e-14,120;UBERON:0006603,2.27e-14,120;UBERON:0000991,5.95e-12,18;UBERON:0005564,5.95e-12,18;UBERON:0000473,1.67e-11,14;UBERON:0002369,2.28e-11,7;UBERON:0006858,2.28e-11,7;UBERON:0004176,7.34e-11,17;UBERON:0009196,7.34e-11,17;UBERON:0009117,7.34e-11,17;UBERON:0003135,1.57e-10,15;UBERON:0007100,1.92e-10,18;UBERON:0000948,1.92e-10,18;UBERON:0005498,1.92e-10,18;UBERON:0004140,1.92e-10,18;UBERON:0009881,1.92e-10,18;UBERON:0004141,1.92e-10,18;UBERON:0003084,1.92e-10,18;UBERON:0007005,1.92e-10,18;UBERON:0004139,1.92e-10,18;UBERON:0004291,1.92e-10,18;UBERON:0003101,1.11e-09,16;UBERON:0000079,1.11e-09,16;UBERON:0003133,4.96e-08,24;UBERON:0004535,1.97e-07,23;UBERON:0001009,1.97e-07,23;UBERON:0005156,3.85e-07,26;UBERON:0000990,3.85e-07,26;UBERON:0002368,4.16e-07,60;UBERON:0010314,9.34e-07,92
|phase1_expression=0,1.74487703819681,0,1.20985684522732,1.00179145989269,0.16787927191189,0.233612640595526,1.80772652818207,37.0274339258884,51.2601312645166,33.216285835748,24.6495971295589,1.54080656938085,1.48614684112296,0.666219523631325,0.404950534779652,0,0.157731082679119,0.137114433605739,0,0.680346321208558,0.0992909512008853,0.261199789138935,0,0,0,0,0.215471232685889,0.190023419456374,0,0,0,0,0,0,0.166234645358492,0.204169356262369,2.51118978442145,0,1.57057123192139,1.17646297606203,3.41522742479223,1.45653105909346,0,0.202753862439029,0,0.782391344348039,0,0.219686182734472,0,0,0,0,0,0.336093799142464,0,0.286533439938757,0,0.202316460859598,0,0,0,0,0,0,0,0,0,0.518448061542388,0.270011876663381,0,0,0,0.61245399607477,0.0958454710182364,0,0,0,0.153606533256243,0.791317726381163,0.182975287204819,0,0,0.56276261003168,0.30559649555362,0,0,0,0,0.151143120213571,0,0,0,0,0,0,0,0,0,0,0.422530259330042,0,0,0,0,0,0,0.11418387971906,0.258937883647172,29.2431013957705,9.02123699183906,34.404599049272,26.0595511899346,24.5677904100775,47.0354828542819,28.7776494144957,0,0.289198713839823,0,0,0.220841518460394,0,0,1.17112318804619,1.25668024088073,0,0,0,0.127070227073065,0.149790639404823,0,0.502617408451458,0.173824320192276,0.255715457330331,0.20778804455956,0.811206315338788,0.509196819251581,0.248813941220186,0.758168275301024,0.420883711772948,0.260240885925407,0,0.540186389416048,0,0.272145996605311,0.12811372028485,0.187403449119458,0.517406741478031,0,0.378212160335639,0.175951124163949,0,0.556094498451196,0.696504333044333,0,2.58744546864041,0,0,0,2.07125772535502,1.40715635988658,1.80062061461015,1.18372367792605,2.16440654922144,1.07986979021165,1.62773761325285,1.3413670069981,2.21854150497622,1.15191894939436,0.32833492815819,2.26992666728396,1.90059983652932,1.09775057645525,1.61047702512446,0.210289948564127,1.02904612379284,0,0,0.213288250535234,0.464473343720877,0,0,0,0,0,0.164698954724011,0,0,0.19496408711912,0.898819408654221,0,0.199141273254367,0.189667900953082,2.28497025219458,1.1270773567308,0.203651327845314,0.193952487167626,0.561086559122548,0.442655759869801,0.442830443938806,0.31399745568275,0.740382983530803,0,0,0.393117990226406,0,0,0,0.25462585178142,0,0,0,0,0,0.312037673114561,0,0,0,0.184753190166605,0.189491411770485,0,0.169745085775188,0.938760993154008,0.335012514883631,0.952174563544055,0.390267295715598,0.157635144106191,0.44292937929755,0.159454768657487,0.655453258862952,0.690739927463582,0.289298117163023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292255857911312,0,0,18.8780313326997,0.534196811001766,0.488660878060728,0.989820737835213,0,0,0,0,0,0,0,0,0.356497378384721,0,0,0,0.340439605753788,1.44048875225048,1.68166288917581,1.28602221018955,1.41872186913819,1.07021290561242,0.658196082408484,1.8267896946876,0.938686832254841,0,0,0.49465875882444,0,0.120625849856312,0.119372344003136,0.164140899745061,0,0.18542530201051,0.170870880797853,0,0,0,0.27338845544205,0.457556346413045,0.169978429993855,0,0,0.954670618015114,0.158167996790568,0,0.216010681643603,0.209088296014469,0.218362563746178,0.134864346384821,0.247960367176008,0.523511883968059,0.129614973291793,0,2.81846469342095,14.6526215123099,13.4021377270249,16.7228021975881,14.0784207590727,18.247261553004,23.1193760132135,13.020438484395,10.6956531314225,2.41584120826006,4.89651010638371,0.948033361884535,0.405450430580328,0,0.129920822977795,0,0.39736270956253,1.08175904567972,1.03382669022204,0.706765149637033,0.914481679859998,1.10908803650525,1.55932609183604,0.865906574762965,1.75315353272353,0.453460767230423,0,0.179427713218951,0,0.19318959403219,0,0.36630324853453,0,0.501572104035363,1.12950368523413,0,1.14579102687879,0.859265911718438,0.685082519770642,0.755393897389701,0.675022500231806,0.45032120322422,0.453142408984205,2.07104124700728,0.207574695168353,0.798049746802062,0.853668028770671,0.243106717068294,0,0,1.77797382241292,0.206035057238894,0.962757628775446,0,0,0.943131706930381,0.561849044819294,0.256100609619477,0.459483751644906,0,0.695305955669133,0.192909220463705,0.824171801606613,0.294397840268795,0.342869252385415,0.354951612318675,0.476872379894642,0.290692833264657,0.376437521661322,0.592302255241736,0,0,0.407412341537585,0.561142271657738,0.237270036248348,0.394017929502254,0.818462086339379,0.309873682371932,1.35034627686799,0.999242311751784,0.233931608445408,1.50409737833809,0.57386499620653,0.661774257358546,0
|phase1_expression=0,1.74487703819681,0,1.20985684522732,1.00179145989269,0.16787927191189,0.233612640595526,1.80772652818207,37.0274339258884,51.2601312645166,33.216285835748,24.6495971295589,1.54080656938085,1.48614684112296,0.666219523631325,0.404950534779652,0,0.157731082679119,0.137114433605739,0,0.680346321208558,0.0992909512008853,0.261199789138935,0,0,0,0,0.215471232685889,0.190023419456374,0,0,0,0,0,0,0.166234645358492,0.204169356262369,2.51118978442145,0,1.57057123192139,1.17646297606203,3.41522742479223,1.45653105909346,0,0.202753862439029,0,0.782391344348039,0,0.219686182734472,0,0,0,0,0,0.336093799142464,0,0.286533439938757,0,0.202316460859598,0,0,0,0,0,0,0,0,0,0.518448061542388,0.270011876663381,0,0,0,0.61245399607477,0.0958454710182364,0,0,0,0.153606533256243,0.791317726381163,0.182975287204819,0,0,0.56276261003168,0.30559649555362,0,0,0,0,0.151143120213571,0,0,0,0,0,0,0,0,0,0,0.422530259330042,0,0,0,0,0,0,0.11418387971906,0.258937883647172,29.2431013957705,9.02123699183906,34.404599049272,26.0595511899346,24.5677904100775,47.0354828542819,28.7776494144957,0,0.289198713839823,0,0,0.220841518460394,0,0,1.17112318804619,1.25668024088073,0,0,0,0.127070227073065,0.149790639404823,0,0.502617408451458,0.173824320192276,0.255715457330331,0.20778804455956,0.811206315338788,0.509196819251581,0.248813941220186,0.758168275301024,0.420883711772948,0.260240885925407,0,0.540186389416048,0,0.272145996605311,0.12811372028485,0.187403449119458,0.517406741478031,0,0.378212160335639,0.175951124163949,0,0.556094498451196,0.696504333044333,0,2.58744546864041,0,0,0,2.07125772535502,1.40715635988658,1.80062061461015,1.18372367792605,2.16440654922144,1.07986979021165,1.62773761325285,1.3413670069981,2.21854150497622,1.15191894939436,0.32833492815819,2.26992666728396,1.90059983652932,1.09775057645525,1.61047702512446,0.210289948564127,1.02904612379284,0,0,0.213288250535234,0.464473343720877,0,0,0,0,0,0.164698954724011,0,0,0.19496408711912,0.898819408654221,0,0.199141273254367,0.189667900953082,2.28497025219458,1.1270773567308,0.203651327845314,0.193952487167626,0.561086559122548,0.442655759869801,0.442830443938806,0.31399745568275,0.740382983530803,0,0,0.393117990226406,0,0,0,0.25462585178142,0,0,0,0,0,0.312037673114561,0,0,0,0.184753190166605,0.189491411770485,0,0.169745085775188,0.938760993154008,0.335012514883631,0.952174563544055,0.390267295715598,0.157635144106191,0.44292937929755,0.159454768657487,0.655453258862952,0.690739927463582,0.289298117163023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292255857911312,0,0,18.8780313326997,0.534196811001766,0.488660878060728,0.989820737835213,0,0,0,0,0,0,0,0,0.356497378384721,0,0,0,0.340439605753788,1.44048875225048,1.68166288917581,1.28602221018955,1.41872186913819,1.07021290561242,0.658196082408484,1.8267896946876,0.938686832254841,0,0,0.49465875882444,0,0.120625849856312,0.119372344003136,0.164140899745061,0,0.18542530201051,0.170870880797853,0,0,0,0.27338845544205,0.457556346413045,0.169978429993855,0,0,0.954670618015114,0.158167996790568,0,0.216010681643603,0.209088296014469,0.218362563746178,0.134864346384821,0.247960367176008,0.523511883968059,0.129614973291793,0,2.81846469342095,14.6526215123099,13.4021377270249,16.7228021975881,14.0784207590727,18.247261553004,23.1193760132135,13.020438484395,10.6956531314225,2.41584120826006,4.89651010638371,0.948033361884535,0.405450430580328,0,0.129920822977795,0,0.39736270956253,1.08175904567972,1.03382669022204,0.706765149637033,0.914481679859998,1.10908803650525,1.55932609183604,0.865906574762965,1.75315353272353,0.453460767230423,0,0.179427713218951,0,0.19318959403219,0,0.36630324853453,0,0.501572104035363,1.12950368523413,0,1.14579102687879,0.859265911718438,0.685082519770642,0.755393897389701,0.675022500231806,0.45032120322422,0.453142408984205,2.07104124700728,0.207574695168353,0.798049746802062,0.853668028770671,0.243106717068294,0,0,1.77797382241292,0.206035057238894,0.962757628775446,0,0,0.943131706930381,0.561849044819294,0.256100609619477,0.459483751644906,0,0.695305955669133,0.192909220463705,0.824171801606613,0.294397840268795,0.342869252385415,0.354951612318675,0.476872379894642,0.290692833264657,0.376437521661322,0.592302255241736,0,0,0.407412341537585,0.561142271657738,0.237270036248348,0.394017929502254,0.818462086339379,0.309873682371932,1.35034627686799,0.999242311751784,0.233931608445408,1.50409737833809,0.57386499620653,0.661774257358546,0
|short_description=p3@Gramd1b
|short_description=p3@Gramd1b
}}
}}

Latest revision as of 15:18, 26 September 2015

Short description:p3@Gramd1b
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_3_at_Gramd1b_5end
Coexpression cluster:MCL_coexpression_mm9:2493
Association with transcript: -388bp_to_ENSMUST00000045682, NM_172768, uc009ozq.1_5end
EntrezGene:Gramd1b
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression

Sample

p3@Gramd1b

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G70.00
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I51.74
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I60.00
CD326+ enterocyte, pool1.CNhs13542.11848-124I31.21
CD326+ enterocyte, pool2.CNhs13197.11849-124I41.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I70.17
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I80.23
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E91.81
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E737.03
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F251.26
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E633.22
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F124.65
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E41.54
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E81.49
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A10.67
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A30.40
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A50.00
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A20.16
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A40.14
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A60.00
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A30.68
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H20.10
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I90.26
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D10.00
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D20.00
GP2+ M cell, pool1.CNhs13228.11845-124H90.00
GP2+ M cell, pool2.CNhs13231.11846-124I10.00
GP2+ M cell, pool3.CNhs13240.11847-124I20.22
Ileum epithelium, pool1.CNhs13199.10252-104B90.19
Ileum epithelium, pool2.CNhs13232.10253-104C10.00
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C80.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I30.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G60.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E90.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F50.00
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F60.17
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F70.20
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G82.51
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H10.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H31.57
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G91.18
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H23.42
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H41.46
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D80.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D90.20
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B30.00
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B70.78
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C20.00
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B80.22
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C30.00
Mouse Astrocytes, donor2.CNhs12078.11552-120C40.00
Mouse Astrocytes, donor3.CNhs12107.11633-122C40.00
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A20.00
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I90.00
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A10.34
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C10.00
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E10.29
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C50.00
Mouse Granule cells, donor1.CNhs12131.11713-123C30.20
Mouse Granule cells, donor2.CNhs12357.11731-123E30.00
Mouse Granule cells, donor3.CNhs12108.11636-122C70.00
Mouse Meningeal cells, donor1.CNhs12132.11716-123C60.00
Mouse Meningeal cells, donor3.CNhs12109.11639-122D10.00
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D20.00
Mouse Microglia, donor1.CNhs12629.11718-123C80.00
Mouse Microglia, donor2.CNhs12634.11736-123E80.00
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D50.52
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F50.27
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D90.00
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F10.00
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D50.00
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D20.61
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F20.10
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D60.00
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D30.00
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F30.00
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D70.15
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D40.79
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F40.18
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D80.00
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E40.00
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E50.56
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I60.31
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D60.00
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F60.00
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E10.00
Mouse Schwann, donor1.CNhs12507.11728-123D90.00
Mouse Schwann, donor2.CNhs12573.11746-123F90.15
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G30.00
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F70.00
Mouse hepatocyte, donor1.CNhs13078.11714-123C40.00
Mouse hepatocyte, donor3.CNhs12615.11637-122C80.00
Mouse hepatocyte, donor6.CNhs13090.11822-124F40.00
Mouse hepatocyte, donor8.CNhs13091.11824-124F60.00
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A70.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I70.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E30.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I80.00
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G60.42
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H10.00
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I80.00
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B60.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G10.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G20.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G30.00
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B60.11
accessory axillary lymph node, adult.CNhs10475.1063-29H90.26
adrenal gland, adult.CNhs10508.49-24D729.24
adrenal gland, embryo E14.CNhs11038.406-44C59.02
adrenal gland, embryo E16.CNhs11004.1254-43D634.40
adrenal gland, embryo E17.CNhs11043.1263-45I126.06
adrenal gland, embryo E18.CNhs11026.1262-18F524.57
adrenal gland, neonate N00.CNhs11191.1311-23C147.04
adrenal gland, neonate N25.CNhs11223.1377-27I328.78
amnion, adult pregnant day17.5.CNhs10488.583-22A80.00
aorta, adult.CNhs10498.46-23H10.29
bone (os femoris), adult.CNhs10483.56-12G20.00
bone (os femoris), neonate N02.CNhs11227.1985-43F50.00
bone (os femoris), neonate N16.CNhs11225.1525-43A60.22
bone (os femoris), neonate N20.CNhs11195.1350-25C30.00
cecum, adult.CNhs10467.37-13H40.00
cerebellum, adult.CNhs10494.15-8B21.17
cerebellum, neonate N30.CNhs11135.1395-42I21.26
colon, adult.CNhs10468.36-18H70.00
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C70.00
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D10.00
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D40.13
corpora quadrigemina, adult.CNhs10501.16-22A40.15
corpus striatum, adult.CNhs10487.19-21D80.00
corpus striatum, neonate N00.CNhs11226.630-43F10.50
cortex, adult.CNhs10473.12-14D50.17
cortex, neonate N30.CNhs11107.1392-42F20.26
diencephalon, adult.CNhs10482.20-12F20.21
diencephalon, neonate N30.CNhs11201.1388-42B20.81
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B10.51
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A20.25
epididymis, adult.CNhs10490.58-23B20.76
eyeball, adult.CNhs10484.31-12G40.42
eyeball, embryo E12.CNhs11016.345-16C60.26
eyeball, embryo E14.CNhs10521.399-16E20.00
eyeball, embryo E15.CNhs10593.426-16C90.54
eyeball, embryo E17.CNhs11023.1261-18D40.00
eyeball, neonate N00.CNhs11207.633-15C60.27
eyeball, neonate N01.CNhs11140.1532-43E70.13
eyeball, neonate N02.CNhs11205.1551-44G80.19
eyeball, neonate N16.CNhs11188.777-19A20.52
forelimb, embryo E11.CNhs10596.335-25E20.00
forelimb, embryo E12.CNhs10600.359-14H20.38
forelimb, embryo E13.CNhs10589.384-1E20.18
forelimb, embryo E14.CNhs10577.413-26A80.00
forelimb, embryo E15.CNhs11007.437-20E70.56
forelimb, embryo E17.CNhs10598.1517-43C40.70
forelimb, embryo E18.CNhs11008.1520-43B50.00
gonad, embryo E13.CNhs11044.1564-45I62.59
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C80.00
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D20.00
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D50.00
heart, embryo E11.CNhs10586.331-24E92.07
heart, embryo E12.CNhs11015.353-12F51.41
heart, embryo E13.CNhs11013.376-3I91.80
heart, embryo E14.CNhs10597.403-26D41.18
heart, embryo E15.CNhs11017.431-16C82.16
heart, embryo E16.CNhs11021.457-17C61.08
heart, embryo E17.CNhs11025.479-18E51.63
heart, embryo E18.CNhs11030.1283-20G31.34
heart, neonate N00.CNhs11213.639-21E32.22
heart, neonate N03.CNhs11221.1349-25I21.15
heart, neonate N10.CNhs11118.749-24G10.33
heart, neonate N16.CNhs11209.782-15G12.27
heart, neonate N20.CNhs11127.821-26I61.90
heart, neonate N25.CNhs11196.1351-25D31.10
heart, neonate N30.CNhs11202.1390-42D21.61
hippocampus, adult.CNhs10478.13-16E80.21
hippocampus, neonate N00.CNhs11228.627-43G11.03
intestinal mucosa, adult.CNhs10506.860-29I30.00
intestine, adult.CNhs10496.178-9A30.00
intestine, embryo E12.CNhs11019.1251-16I50.21
intestine, embryo E13.CNhs11010.381-16D50.46
intestine, embryo E15.CNhs10602.976-16D80.00
intestine, embryo E16.CNhs10585.463-22H40.00
intestine, embryo E17.CNhs10582.482-18D30.00
intestine, embryo E18.CNhs10526.1289-20F70.00
intestine, neonate N00.CNhs11126.644-26D10.00
intestine, neonate N01.CNhs11192.1322-23E90.16
intestine, neonate N06.CNhs11102.688-20B80.00
intestine, neonate N07.CNhs11095.720-20F20.00
intestine, neonate N10.CNhs11098.755-23A50.19
intestine, neonate N20.CNhs11187.827-18D10.90
intestine, neonate N25.CNhs11121.1352-25E30.00
intestine, neonate N30.CNhs11131.1384-42G10.20
kidney, embryo E14.CNhs10606.411-4I90.19
kidney, embryo E15.CNhs10997.434-16F82.28
kidney, embryo E16.CNhs10584.464-22A51.13
kidney, embryo E17.CNhs11028.483-18I20.20
kidney, embryo E18.CNhs11001.1288-20C70.19
kidney, neonate N00.CNhs11214.646-21G70.56
kidney, neonate N10.CNhs11206.758-6D50.44
kidney, neonate N20.CNhs11113.832-19I10.44
kidney, neonate N25.CNhs11122.1353-25F30.31
kidney, neonate N30.CNhs11203.1385-42H10.74
liver, adult pregnant day01.CNhs10466.508-5B20.00
liver, embryo E12.CNhs10601.355-15F80.00
liver, embryo E13.CNhs10524.378-3H60.39
liver, embryo E14.CNhs10594.409-16E10.00
liver, embryo E15.CNhs10520.433-16D70.00
liver, embryo E16.CNhs10523.462-17F50.00
liver, embryo E17.CNhs10510.481-18A30.25
liver, embryo E18.CNhs10579.499-43G40.00
liver, neonate N00.CNhs11117.641-24F40.00
liver, neonate N03.CNhs11123.1345-25G20.00
liver, neonate N06.CNhs11101.684-20A80.00
liver, neonate N07.CNhs11103.716-20H20.00
liver, neonate N10.CNhs11115.751-24B90.31
liver, neonate N20.CNhs11220.823-25A30.00
liver, neonate N25.CNhs11198.1368-26H10.00
liver, neonate N30.CNhs11106.1382-42D10.00
lung, adult.CNhs10474.28-22B10.18
lung, embryo E12.CNhs10522.354-16G20.19
lung, embryo E14.CNhs10604.404-26F80.00
lung, embryo E15.CNhs11020.432-17C50.17
lung, embryo E16.CNhs10998.458-17B60.94
lung, embryo E17.CNhs10605.480-44A60.34
lung, embryo E18.CNhs10583.1287-20I60.95
lung, neonate N00.CNhs11224.640-42C60.39
lung, neonate N06.CNhs11212.683-20E50.16
lung, neonate N07.CNhs11111.715-19A30.44
lung, neonate N10.CNhs11219.750-23E60.16
lung, neonate N20.CNhs11109.822-18A40.66
lung, neonate N25.CNhs11119.1359-25C70.69
lung, neonate N30.CNhs11133.1394-42H20.29
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A10.00
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A10.00
mammary gland, adult lactating day02.CNhs10480.595-22B60.00
mammary gland, adult pregnant day19.CNhs10476.588-5H20.00
medulla oblongata, adult.CNhs10477.17-12C20.00
medulla oblongata, neonate N30.CNhs11200.1396-42A30.00
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C70.00
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C20.00
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E10.00
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E20.00
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E30.00
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D70.00
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D80.00
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D90.00
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D40.00
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D50.29
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D60.00
olfactory brain, adult.CNhs10489.18-22I90.00
ovary, adult.CNhs10507.91-2I718.88
ovary, embryo E18.CNhs11040.505-44H70.53
ovary, neonate N00.CNhs11217.1299-22I40.49
oviduct, adult pregnant day01.CNhs10500.988-6G60.99
pancreas, adult.CNhs10486.34-16E40.00
pancreas, embryo E14.CNhs11012.405-44F40.00
pancreas, embryo E15.CNhs11042.1556-45F20.00
pancreas, embryo E16.CNhs11003.460-26E50.00
pancreas, embryo E17.CNhs10599.1558-45G30.00
pancreas, embryo E18.CNhs10580.1535-43I70.00
pancreas, neonate N00.CNhs11105.645-26G90.00
pancreas, neonate N01.CNhs11138.1531-43D70.00
pancreas, neonate N02.CNhs11139.1539-43D80.36
pancreas, neonate N16.CNhs11136.787-43B60.00
pancreas, neonate N25.CNhs11094.1555-45E20.00
pancreas, neonate N30.CNhs11182.1548-44H50.00
pituitary gland, adult.CNhs10493.21-1G80.34
pituitary gland, embryo E12.CNhs11018.346-16E61.44
pituitary gland, embryo E13.CNhs11009.370-44C71.68
pituitary gland, embryo E14.CNhs11037.398-44A51.29
pituitary gland, embryo E15.CNhs10592.427-16B91.42
pituitary gland, embryo E16.CNhs11036.449-43F61.07
pituitary gland, embryo E17.CNhs11039.1265-44F50.66
pituitary gland, neonate N00.CNhs11190.1308-22E91.83
placenta, adult pregnant day10.CNhs10472.539-13I70.94
placenta, adult pregnant day17.CNhs10464.577-18G30.00
prostate, adult.CNhs10470.859-1F80.00
skin, adult.CNhs10492.30-1C30.49
skin, neonate N00.CNhs11124.650-25G40.00
skin, neonate N03.CNhs11215.662-22H30.12
skin, neonate N06.CNhs11097.693-20I50.12
skin, neonate N10.CNhs11108.762-6C40.16
small intestine, neonate N16.CNhs11114.790-21I10.00
spinal cord, adult.CNhs10505.24-13C90.19
spleen, adult.CNhs10465.25-2G20.17
spleen, embryo E16.CNhs11035.461-43C10.00
spleen, embryo E18.CNhs11011.1271-21F20.00
spleen, neonate N10.CNhs11116.752-24D10.00
spleen, neonate N20.CNhs11112.824-19H10.27
spleen, neonate N25.CNhs11099.1354-25G30.46
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C60.17
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C90.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D30.00
stomach, adult.CNhs10503.33-1H60.95
stomach, embryo E12.CNhs10588.356-43E30.16
stomach, embryo E15.CNhs10603.1252-16G80.00
stomach, embryo E16.CNhs11022.459-17D40.22
stomach, embryo E17.CNhs11006.1035-18D50.21
stomach, embryo E18.CNhs10999.1286-20C60.22
stomach, neonate N03.CNhs11193.1340-24B80.13
stomach, neonate N07.CNhs11210.718-18A90.25
stomach, neonate N25.CNhs11104.1355-25E40.52
stomach, neonate N30.CNhs11134.1386-42I10.13
submandibular gland, adult.CNhs10469.59-29C10.00
testis, adult.CNhs10504.57-7G52.82
testis, embryo E13.CNhs11031.389-23F514.65
testis, embryo E15.CNhs11034.443-27C513.40
testis, embryo E16.CNhs11033.470-26G516.72
testis, embryo E17.CNhs11029.486-18I514.08
testis, embryo E18.CNhs11027.503-18G518.25
testis, neonate N00.CNhs11189.1300-22B723.12
testis, neonate N07.CNhs11222.726-26I413.02
testis, neonate N10.CNhs11204.763-44D910.70
testis, neonate N20.CNhs11110.839-18H32.42
testis, neonate N30.CNhs11130.1391-42E24.90
thymus, adult.CNhs10471.38-12B50.95
thymus, embryo E14.CNhs11041.402-44I40.41
thymus, embryo E15.CNhs11005.430-45I20.00
thymus, embryo E16.CNhs11002.456-26C50.13
thymus, embryo E17.CNhs10581.478-18C10.00
thymus, embryo E18.CNhs10595.1273-19G40.40
thymus, neonate N02.CNhs11181.1541-43F81.08
thymus, neonate N03.CNhs11137.2104-43C71.03
thymus, neonate N06.CNhs11197.681-26C40.71
thymus, neonate N07.CNhs11211.713-19D30.91
thymus, neonate N10.CNhs11194.748-24E41.11
thymus, neonate N20.CNhs11186.820-7A21.56
thymus, neonate N25.CNhs11125.1362-25G70.87
thymus, neonate N30.CNhs11132.1393-42G21.75
tongue, adult.CNhs10499.32-1B40.45
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H30.00
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F70.18
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G50.00
urinary bladder, adult.CNhs10481.879-12E40.19
uterus, adult pregnant day19.CNhs10497.590-15F50.00
uterus, adult.CNhs10509.92-27E50.37
vagina, adult.CNhs10502.89-27D50.00
vesicular gland, adult.CNhs10491.51-27F80.50
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A11.13
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A20.00
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A31.15
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D70.86
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A40.69
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A50.76
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A60.68
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A70.45
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A80.45
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A92.07
whole body, embryo E11.CNhs11014.324-5I80.21
whole body, embryo E12.CNhs10587.857-27C90.80
whole body, embryo E13.CNhs10512.372-23H20.85
whole body, embryo E14.5.CNhs10578.420-27D20.24
whole body, embryo E14.CNhs10519.395-14B10.00
whole body, embryo E16.CNhs10514.453-14F20.00
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G51.78
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G50.21
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G50.96
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G50.94
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G50.56
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G50.26
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G50.46
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G50.70
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G50.19
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G50.82
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G50.29
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G50.34
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G50.35
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G50.48
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G50.29
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G50.38
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G50.59
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G50.41
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G50.56
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G50.24
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G50.39
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G50.82
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G50.31
whole body, embryo E17.5.CNhs10513.490-9F91.35
whole body, embryo E17.CNhs10517.475-3I51.00
whole body, embryo E18.CNhs10516.493-3B30.23
whole body, neonate N00.CNhs10525.657-19C21.50
whole body, neonate N01.CNhs10576.659-23C60.57
whole body, neonate N06.CNhs10515.692-21D10.66
whole body, neonate N10.CNhs10518.761-6B40.00





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Cell type
Ontology termp-valuen
thymocyte4.31e-096
double negative thymocyte4.31e-096
naive T cell4.31e-096
double-positive, alpha-beta thymocyte4.31e-096
CD4-positive, alpha-beta thymocyte4.31e-096
naive thymus-derived CD4-positive, alpha-beta T cell4.31e-096
DN4 thymocyte4.31e-096
DN1 thymic pro-T cell4.31e-096
DN2 thymocyte4.31e-096
DN3 thymocyte4.31e-096
immature single positive thymocyte4.31e-096
early T lineage precursor4.31e-096
mature CD4 single-positive thymocyte4.31e-096
resting double-positive thymocyte4.31e-096
double-positive blast4.31e-096
CD69-positive double-positive thymocyte4.31e-096
CD69-positive, CD4-positive single-positive thymocyte4.31e-096
CD4-positive, CD8-intermediate double-positive thymocyte4.31e-096
CD24-positive, CD4 single-positive thymocyte4.31e-096
CD4-positive, alpha-beta T cell1.17e-088
mature alpha-beta T cell1.57e-079
alpha-beta T cell1.57e-079
immature T cell1.57e-079
mature T cell1.57e-079
immature alpha-beta T cell1.57e-079

Uber anatomy
Ontology termp-valuen
mesoderm2.27e-14120
mesoderm-derived structure2.27e-14120
presumptive mesoderm2.27e-14120
gonad5.95e-1218
gonad primordium5.95e-1218
testis1.67e-1114
adrenal gland2.28e-117
adrenal/interrenal gland2.28e-117
external genitalia7.34e-1117
indifferent external genitalia7.34e-1117
indifferent gonad7.34e-1117
male reproductive organ1.57e-1015
primary circulatory organ1.92e-1018
heart1.92e-1018
primitive heart tube1.92e-1018
primary heart field1.92e-1018
anterior lateral plate mesoderm1.92e-1018
heart tube1.92e-1018
heart primordium1.92e-1018
cardiac mesoderm1.92e-1018
cardiogenic plate1.92e-1018
heart rudiment1.92e-1018
male organism1.11e-0916
male reproductive system1.11e-0916
reproductive organ4.96e-0824
cardiovascular system1.97e-0723
circulatory system1.97e-0723
reproductive structure3.85e-0726
reproductive system3.85e-0726
endocrine gland4.16e-0760
structure with developmental contribution from neural crest9.34e-0792
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FFCP_PHASE1:Mm9::chr9:40263737..40263761,-&oldid=4260356"