FFCP PHASE1:Mm9::chr13:83878654..83878670,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene= | |EntrezGene= | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1352 | |MCL_coexpression_id=1352 | ||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=168bp_to_ENSMUST00000052354_5end | |association_with_transcript=168bp_to_ENSMUST00000052354_5end | ||
|cluster_id=chr13:83878654..83878670,+ | |||
|description=CAGE_peak_3_at_ENSMUST00000052354_5end | |description=CAGE_peak_3_at_ENSMUST00000052354_5end | ||
|id=chr13:83878654..83878670,+ | |id=chr13:83878654..83878670,+ | ||
|ontology_enrichment_celltype=CL:0000117!2.96e-17!23;CL:0000337!2.96e-17!23;CL:0000540!3.82e-15!33;CL:0000047!3.82e-15!33;CL:0000031!3.82e-15!33;CL:0000404!3.82e-15!33;CL:0000221!5.98e-15!44;CL:0000133!5.98e-15!44;CL:0002319!5.12e-14!43;CL:0000393!6.30e-12!39;CL:0000211!6.30e-12!39;CL:0002609!3.63e-11!6;CL:0000055!3.77e-11!50;CL:0002321!5.37e-07!70;CL:0000220!5.37e-07!70 | |ontology_enrichment_celltype=CL:0000117!2.96e-17!23;CL:0000337!2.96e-17!23;CL:0000540!3.82e-15!33;CL:0000047!3.82e-15!33;CL:0000031!3.82e-15!33;CL:0000404!3.82e-15!33;CL:0000221!5.98e-15!44;CL:0000133!5.98e-15!44;CL:0002319!5.12e-14!43;CL:0000393!6.30e-12!39;CL:0000211!6.30e-12!39;CL:0002609!3.63e-11!6;CL:0000055!3.77e-11!50;CL:0002321!5.37e-07!70;CL:0000220!5.37e-07!70 | ||
|ontology_enrichment_celltype_v019_2=CL:0002609,3.01e-39,6;CL:0002608,3.11e-20,3;CL:0000117,2.72e-16,23;CL:0000337,2.72e-16,23;CL:0000540,1.68e-11,33;CL:0000047,1.68e-11,33;CL:0000031,1.68e-11,33;CL:0000404,1.68e-11,33;CL:0000393,8.49e-10,39;CL:0000211,8.49e-10,39;CL:0002319,6.37e-09,43;CL:0000221,9.96e-09,44;CL:0000133,9.96e-09,44 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!2.09e-25!34;UBERON:0000073!5.09e-23!75;UBERON:0001016!5.09e-23!75;UBERON:0004121!4.05e-22!102;UBERON:0000924!4.05e-22!102;UBERON:0006601!4.05e-22!102;UBERON:0002791!1.48e-21!29;UBERON:0003528!1.48e-21!29;UBERON:0001893!1.48e-21!29;UBERON:0001017!2.32e-21!73;UBERON:0005743!2.32e-21!73;UBERON:0000033!2.93e-21!63;UBERON:0001049!6.43e-21!52;UBERON:0005068!6.43e-21!52;UBERON:0006241!6.43e-21!52;UBERON:0007135!6.43e-21!52;UBERON:0002346!1.48e-20!71;UBERON:0003075!1.48e-20!71;UBERON:0007284!1.48e-20!71;UBERON:0003056!1.46e-19!49;UBERON:0002616!8.77e-18!49;UBERON:0000955!2.87e-17!50;UBERON:0006238!2.87e-17!50;UBERON:0000956!1.67e-15!21;UBERON:0001869!1.67e-15!21;UBERON:0000203!1.67e-15!21;UBERON:0003080!3.53e-15!40;UBERON:0002780!2.24e-14!39;UBERON:0001890!2.24e-14!39;UBERON:0006240!2.24e-14!39;UBERON:0007811!5.29e-13!86;UBERON:0000153!4.16e-11!94;UBERON:0002619!2.24e-10!17;UBERON:0000369!2.03e-08!5;UBERON:0002435!2.03e-08!5;UBERON:0000204!2.03e-08!5;UBERON:0010082!2.03e-08!5;UBERON:0002420!3.36e-07!8;UBERON:0007245!3.36e-07!8;UBERON:0010009!3.36e-07!8;UBERON:0010011!3.36e-07!8;UBERON:0000454!3.36e-07!8 | |ontology_enrichment_uberon=UBERON:0002020!2.09e-25!34;UBERON:0000073!5.09e-23!75;UBERON:0001016!5.09e-23!75;UBERON:0004121!4.05e-22!102;UBERON:0000924!4.05e-22!102;UBERON:0006601!4.05e-22!102;UBERON:0002791!1.48e-21!29;UBERON:0003528!1.48e-21!29;UBERON:0001893!1.48e-21!29;UBERON:0001017!2.32e-21!73;UBERON:0005743!2.32e-21!73;UBERON:0000033!2.93e-21!63;UBERON:0001049!6.43e-21!52;UBERON:0005068!6.43e-21!52;UBERON:0006241!6.43e-21!52;UBERON:0007135!6.43e-21!52;UBERON:0002346!1.48e-20!71;UBERON:0003075!1.48e-20!71;UBERON:0007284!1.48e-20!71;UBERON:0003056!1.46e-19!49;UBERON:0002616!8.77e-18!49;UBERON:0000955!2.87e-17!50;UBERON:0006238!2.87e-17!50;UBERON:0000956!1.67e-15!21;UBERON:0001869!1.67e-15!21;UBERON:0000203!1.67e-15!21;UBERON:0003080!3.53e-15!40;UBERON:0002780!2.24e-14!39;UBERON:0001890!2.24e-14!39;UBERON:0006240!2.24e-14!39;UBERON:0007811!5.29e-13!86;UBERON:0000153!4.16e-11!94;UBERON:0002619!2.24e-10!17;UBERON:0000369!2.03e-08!5;UBERON:0002435!2.03e-08!5;UBERON:0000204!2.03e-08!5;UBERON:0010082!2.03e-08!5;UBERON:0002420!3.36e-07!8;UBERON:0007245!3.36e-07!8;UBERON:0010009!3.36e-07!8;UBERON:0010011!3.36e-07!8;UBERON:0000454!3.36e-07!8 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003528,1.94e-18,29;UBERON:0002791,1.94e-18,29;UBERON:0001893,1.94e-18,29;UBERON:0000956,9.31e-18,21;UBERON:0001869,9.31e-18,21;UBERON:0000203,9.31e-18,21;UBERON:0002020,8.43e-16,34;UBERON:0002780,7.80e-14,39;UBERON:0001890,7.80e-14,39;UBERON:0006240,7.80e-14,39;UBERON:0003080,1.69e-13,40;UBERON:0002616,8.56e-12,46;UBERON:0000955,1.50e-11,47;UBERON:0006238,1.50e-11,47;UBERON:0003056,4.27e-11,49;UBERON:0001049,1.77e-10,52;UBERON:0005068,1.77e-10,52;UBERON:0006241,1.77e-10,52;UBERON:0007135,1.77e-10,52;UBERON:0000073,4.19e-10,54;UBERON:0001954,2.87e-09,7;UBERON:0003022,2.87e-09,7;UBERON:0002421,2.87e-09,7;UBERON:0000349,2.87e-09,7;UBERON:0002600,2.87e-09,7;UBERON:0002346,1.41e-08,64;UBERON:0003075,1.41e-08,64;UBERON:0007284,1.41e-08,64;UBERON:0002619,2.23e-08,17;UBERON:0010371,1.48e-07,73;UBERON:0001017,1.48e-07,73;UBERON:0001016,2.31e-07,75 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606949382578793,0,0,0,0,0,0,0,0.599200221036809,0,3.21437798156281,0.810035629990144,1.68259969081106,0,0.220868540951614,0.61245399607477,1.34183659425531,1.83843757322004,0,0.383062014255563,0.153606533256243,0.527545150920775,0.274462930807229,1.56274011167028,0,0,0.763991238884051,0.883885756421003,0.142371680799103,0.559198337475902,0.151452386666368,0.0755715601067855,0,0,0,0,0,0,0,0,0,0,0.281686839553361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0.41889341362691,0,0,0,0,0.149790639404823,0.457500602818626,0.753926112677186,0.173824320192276,0,0,0,0,0,0,0,0,0.229902104433473,0,0.30140963567143,0.340182495756639,0.512454881139399,0.281105173679186,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.420579897128254,0.514523061896422,0,0,0,0,0,0,0,0.190225626112559,0,0,0,0,0,0,0,0,0,0.114248512609729,0,0.203651327845314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0,0,0,0,0,0,0,0.222798674082394,0.283076530788832,0,0.584511715822624,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0,0,0.343706364687375,0.685082519770642,0,0.675022500231806,0,0.906284817968409,1.55328093525546,0.415149390336707,0,0,0,0.209613162627982,0,0.222246727801615,0,0,0,0,0.188626341386076,0,0.128050304809739,0.0574354689556133,0.476293691283074,0,0,0,0,0.342869252385415,0,0.476872379894642,0,0,0,0,0.263069711437843,0,0.561142271657738,0,0,0,0,0.192906610981141,0,0,0,0,0.220591419119515,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606949382578793,0,0,0,0,0,0,0,0.599200221036809,0,3.21437798156281,0.810035629990144,1.68259969081106,0,0.220868540951614,0.61245399607477,1.34183659425531,1.83843757322004,0,0.383062014255563,0.153606533256243,0.527545150920775,0.274462930807229,1.56274011167028,0,0,0.763991238884051,0.883885756421003,0.142371680799103,0.559198337475902,0.151452386666368,0.0755715601067855,0,0,0,0,0,0,0,0,0,0,0.281686839553361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0.41889341362691,0,0,0,0,0.149790639404823,0.457500602818626,0.753926112677186,0.173824320192276,0,0,0,0,0,0,0,0,0.229902104433473,0,0.30140963567143,0.340182495756639,0.512454881139399,0.281105173679186,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.420579897128254,0.514523061896422,0,0,0,0,0,0,0,0.190225626112559,0,0,0,0,0,0,0,0,0,0.114248512609729,0,0.203651327845314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0,0,0,0,0,0,0,0.222798674082394,0.283076530788832,0,0.584511715822624,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0,0,0.343706364687375,0.685082519770642,0,0.675022500231806,0,0.906284817968409,1.55328093525546,0.415149390336707,0,0,0,0.209613162627982,0,0.222246727801615,0,0,0,0,0.188626341386076,0,0.128050304809739,0.0574354689556133,0.476293691283074,0,0,0,0,0.342869252385415,0,0.476872379894642,0,0,0,0,0.263069711437843,0,0.561142271657738,0,0,0,0,0.192906610981141,0,0,0,0,0.220591419119515,0 | ||
|short_description=p3@ENSMUST00000052354 | |short_description=p3@ENSMUST00000052354 | ||
}} | }} |
Latest revision as of 09:08, 6 August 2015
Short description: | p3@ENSMUST00000052354 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_ENSMUST00000052354_5end |
Coexpression cluster: | MCL_coexpression_mm9:1352 |
Association with transcript: | 168bp_to_ENSMUST00000052354_5end |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of cerebral cortex | 3.01e-39 | 6 |
hippocampal neuron | 3.11e-20 | 3 |
CNS neuron (sensu Vertebrata) | 2.72e-16 | 23 |
neuroblast (sensu Vertebrata) | 2.72e-16 | 23 |
neuron | 1.68e-11 | 33 |
neuronal stem cell | 1.68e-11 | 33 |
neuroblast | 1.68e-11 | 33 |
electrically signaling cell | 1.68e-11 | 33 |
electrically responsive cell | 8.49e-10 | 39 |
electrically active cell | 8.49e-10 | 39 |
neural cell | 6.37e-09 | 43 |
ectodermal cell | 9.96e-09 | 44 |
neurectodermal cell | 9.96e-09 | 44 |
Ontology term | p-value | n |
---|---|---|
brain grey matter | 1.94e-18 | 29 |
regional part of telencephalon | 1.94e-18 | 29 |
telencephalon | 1.94e-18 | 29 |
cerebral cortex | 9.31e-18 | 21 |
cerebral hemisphere | 9.31e-18 | 21 |
pallium | 9.31e-18 | 21 |
gray matter | 8.43e-16 | 34 |
regional part of forebrain | 7.80e-14 | 39 |
forebrain | 7.80e-14 | 39 |
future forebrain | 7.80e-14 | 39 |
anterior neural tube | 1.69e-13 | 40 |
regional part of brain | 8.56e-12 | 46 |
brain | 1.50e-11 | 47 |
future brain | 1.50e-11 | 47 |
pre-chordal neural plate | 4.27e-11 | 49 |
neural tube | 1.77e-10 | 52 |
neural rod | 1.77e-10 | 52 |
future spinal cord | 1.77e-10 | 52 |
neural keel | 1.77e-10 | 52 |
regional part of nervous system | 4.19e-10 | 54 |
Ammon's horn | 2.87e-09 | 7 |
lobe parts of cerebral cortex | 2.87e-09 | 7 |
hippocampal formation | 2.87e-09 | 7 |
limbic system | 2.87e-09 | 7 |
limbic lobe | 2.87e-09 | 7 |
neurectoderm | 1.41e-08 | 64 |
neural plate | 1.41e-08 | 64 |
presumptive neural plate | 1.41e-08 | 64 |
regional part of cerebral cortex | 2.23e-08 | 17 |
ecto-epithelium | 1.48e-07 | 73 |
central nervous system | 1.48e-07 | 73 |
nervous system | 2.31e-07 | 75 |