FFCP PHASE1:Hg19::chr2:28113452..28113462,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr2:28113452..28113462,+
|short_description=p3@BRE
|description=CAGE_peak_3_at_BRE_5end
|association_with_transcript=-19bp_to_NM_199193,NM_199194,uc002rlp.1,uc...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9577 | |EntrezGene=9577 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1106 | |HGNC=1106 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NXR7 | |UniProt=Q9NXR7 | ||
|association_with_transcript=-19bp_to_NM_199193,NM_199194,uc002rlp.1,uc002rlq.2,uc002rlr.2,uc002rls.2,uc002rlt.2,uc002rlu.2_5end | |||
|cluster_id=chr2:28113452..28113462,+ | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_3_at_BRE_5end | |||
|id=chr2:28113452..28113462,+ | |||
|ontology_enrichment_celltype=CL:0002057!2.09e-27!42;CL:0000766!7.12e-26!76;CL:0000860!1.78e-25!45;CL:0000557!3.16e-20!71;CL:0000839!1.23e-18!70;CL:0000738!1.59e-18!140;CL:0000763!1.37e-17!112;CL:0000049!1.37e-17!112;CL:0000988!8.53e-17!182;CL:0002194!1.77e-16!63;CL:0000576!1.77e-16!63;CL:0000040!1.77e-16!63;CL:0000559!1.77e-16!63;CL:0002009!2.48e-16!65;CL:0000037!9.22e-16!172;CL:0000566!9.22e-16!172;CL:0002032!2.05e-15!165;CL:0000837!2.05e-15!165;CL:0002031!1.20e-14!124;CL:0002087!3.15e-13!119;CL:0000094!1.07e-08!8;CL:0002393!3.93e-07!9;CL:0002397!3.93e-07!9;CL:0000081!5.08e-07!11;CL:0000134!6.19e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.26e-29;33!CL:0002057;3.26e-29;33!CL:0000766;1.06e-19;69!CL:0000473;1.38e-19;39!CL:0000234;1.38e-19;39!CL:0000576;1.11e-16;48!CL:0000094;5.14e-14;8!CL:0000763;2.02e-11;100!CL:0000775;1.40e-10;3!CL:0000081;5.81e-10;11!CL:0002087;6.34e-10;104!CL:0000097;1.04e-09;5!CL:0000623;7.16e-09;3!CL:0000738;6.56e-08;136!CL:0002393;9.76e-08;6!CL:0002397;9.76e-08;6!CL:0000771;9.94e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,7.29e-38,72;CL:0000860,3.98e-33,42;CL:0002057,3.98e-33,42;CL:0000738,2.04e-28,136;CL:0000473,3.70e-28,48;CL:0000234,3.70e-28,48;CL:0000557,5.64e-28,67;CL:0000763,3.36e-27,108;CL:0000049,3.36e-27,108;CL:0000839,2.17e-26,66;CL:0000037,7.24e-25,168;CL:0000988,2.08e-24,177;CL:0002032,1.36e-23,161;CL:0000837,1.36e-23,161;CL:0002194,3.18e-21,59;CL:0000576,3.18e-21,59;CL:0000040,3.18e-21,59;CL:0000559,3.18e-21,59;CL:0002009,2.47e-20,61;CL:0002031,8.86e-20,120;CL:0002087,5.28e-18,115;CL:0000094,3.30e-14,8;CL:0000775,1.42e-10,3;CL:0000134,1.91e-10,354;CL:0000081,4.24e-10,11;CL:0002320,5.28e-10,361;CL:0000097,6.20e-10,5;CL:0002028,6.20e-10,5;CL:0000623,1.05e-08,3;CL:0000825,1.05e-08,3;CL:0000219,1.85e-08,386;CL:0000771,1.00e-07,2 | |||
|ontology_enrichment_development_v019=CL:0002057;5.11e-25;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.05e-16!80;UBERON:0001474!7.01e-16!86;UBERON:0002390!8.64e-16!102;UBERON:0003061!8.64e-16!102;UBERON:0002193!4.93e-14!112;UBERON:0002405!7.90e-14!115;UBERON:0004765!1.80e-13!101;UBERON:0001434!1.80e-13!101;UBERON:0003081!1.94e-07!216;UBERON:0002204!3.94e-07!167;UBERON:0002384!8.32e-07!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.77e-24,76;UBERON:0001474,1.68e-21,82;UBERON:0002390,9.59e-20,98;UBERON:0003061,9.59e-20,98;UBERON:0004765,6.23e-19,90;UBERON:0002405,4.39e-18,93;UBERON:0002193,3.46e-17,108;UBERON:0001434,2.64e-16,100;UBERON:0002384,4.32e-10,371;UBERON:0003081,4.43e-09,203;UBERON:0002204,1.06e-07,167 | |||
|phase1_expression=0,0,0.281908808191942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,1.96682138424452,0.767658796194425,0.464448369948228,0,0,0,0,0,0.293600439334847,1.10799081706375,1.40381113229099,2.17010870715852,0,0,0,0.581592955118259,1.13362783106643,0.485168122375632,2.09186133215116,0.822335776043652,1.85823822537062,1.43846196161075,1.7931249457037,2.12834006899727,3.10271112662957,4.51839278508678,2.70852973188684,1.50593871634084,0,0.674170453335254,1.22433556948361,1.92557416245656,5.11469700639233,0,0,0.426224750532694,0.870627715885752,1.70215567407342,1.24564449799115,4.77372463987812,0.521482918420201,2.82345498116652,1.21079900526674,1.10483290796269,0.949387162322653,1.05627643155971,0.212604299965044,0.838634582033504,2.13424399178341,0.300353785683013,0.64290234678832,0.855038231223746,0.39783335439818,0.182664153764634,0,0,0,0,0,0,0,0,1.1384259382189,0.587237189370939,2.29363936875137,0,3.36305137788922,0,0.786839080455332,0.786021525498329,1.23360899399706,0.167186495390678,1.95553359980154,1.89379122293893,0,0.111410456885174,0.294605907474837,0,0,0,0,0,0.276350017785848,0,0,0.267540828089713,0,0,0.766440987203842,0.34362744548263,0.506039384039006,0,0,0,0.150575119077773,0,0,0,0,0.604820229674197,0.802320587350522,0.434473211648397,0,0,0.12786256184353,0,0.50133791063589,0.289693037921647,0,0,0.378139268656271,0,0.263504357079378,0.130979075497713,0,0,0,0,0.132957960518865,0.476981248610684,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,28.9916918359339,31.022421131866,0,0,0,0.132409180813219,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0.213557388818567,0.635795703478686,0,0.206105058476878,0.257640540045629,0,0,0.0974370051611986,0,0.0920498986422993,0,0,0,0.339121184620975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0.168584690078102,0.241011029883482,0.220587945464788,0.217879444092406,0,0,0.196221465125346,0,0,0,0,0,0,1.96565443335525,0.590789906681404,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0.462985512576611,0.570762456703795,0,0,0,0.234004265139238,0,0,0.16798212819886,0.141775097242386,0,0,0,1.47798971368783,0.176096868026452,3.93923419527467,3.17063897517315,1.8936365013957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,1.08524321078289,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0.434343920002738,0.205476322550383,0,0,1.18218456121156,1.2937654491571,1.41177339907723,0,0,0,0,0,4.49404214368309,5.9832291840805,9.53155680902882,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0.195801157462741,0,0,3.23571301227925,1.17400313583789,0,0,0,0,0.306923946576125,0,0.384417447767103,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0.308061348417659,0,0,0.422206515571503,0,0.170093705276516,0.215915916102139,0,0.270946437543853,2.50844886927427,1.78413391131527,0.831076008928724,0.671624264166535,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0.382838137483752,0,0,0,0,0,0,0,0.18532421910392,0.143124886741991,0,0,0.38126038784765,0,0,0,0,0,0,0,0,0,0,0.48763373908959,0.243713489631284,0,0,0,0,0,0.66343897524122,0,0,0,0,0.30982349809975,0,0,0.0982490410131212,0.35667105148125,0,0.844430541190656,0.658589785919804,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0.324621940274555,0,0,0,0,0.338583555603207,0.321176150207399,0,1.70338495076131,0,0,0,0.166849141711909,0,0,0,0,0,1.4098700508785,0.18714054040822,0.879049075631364,0,0,0,0,0.296964680832639,0,0,0,0.222617410045812,0.659215496907038,0.422250816255987,1.19548792950642,0,0,0.102268682502155,0.123084805461069,0,0.0898683511473268,0,0.511572370226872,0.197286811273867,0,0,0,0.371072392647405,0,0,0,0.724999575434793,0,0,0,0,0,0,1.77148277162768,0.120596438625408,0,0,0,0,0,0,0.153900517007594,0.113942055847001,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0.163232808159148,0,0,0,0,0,0.593042257361244,0.123563938946503,0,0,0,0,0,0,0.971121518136371,0,0,0,0.31593289814244,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0.34945333648406,0.171986032471617,0,0.0730893170861856,0,0,0,0,0.274083849293502,0,0,0,0.240476460754601,0.426905989478705,0.19980960958213,0,0,0,0,0.248505071130865,0,0,0,0,0,0.600420288709789,0,1.27746588066972,0,0,0.558564802544508,0,7.89660327034495,0.199679000498991,0.429226048136571,0,0.268733889946905,0,0,0,0,0,0,0,0.795229689809303,0,0,0.137539436597234,0,0.2249738915515,0,0,0,1.65491985328316,0.209818352539992,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0.511164065356265,0.113312091520126,2.93104467356165,1.32506888912221,0.517131825446202,0.39669780522807,0,0,0.320362237703084,0.628817220398664,0,0,0,0,0,4.35214242695579,3.0082787282724,4.59518365145192,4.26234419922746,0,0,0.122026264901963,0,1.14681839138014,0.332787154610557,0.124192805882767,0,0,0,0,0,0,0,0.447764408660622,0.467426619694449,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0.265841714557995,0,0,0,0,0.181848659202559,0,0,0,0,0.343395705182793,0,1.26184898228651,0,0,0,0,0.2315224743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| ||
|short_description=p3@BRE | |||
}} | }} |
Latest revision as of 18:32, 16 September 2015
Short description: | p3@BRE |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_BRE_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | -19bp_to_NM_199193, NM_199194, uc002rlp.1, uc002rlq.2, uc002rlr.2, uc002rls.2, uc002rlt.2, uc002rlu.2_5end |
EntrezGene: | BRE |
HGNC: | 1106 |
UniProt: | Q9NXR7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 8.77e-24 | 76 |
bone element | 1.68e-21 | 82 |
hematopoietic system | 9.59e-20 | 98 |
blood island | 9.59e-20 | 98 |
skeletal element | 6.23e-19 | 90 |
immune system | 4.39e-18 | 93 |
hemolymphoid system | 3.46e-17 | 108 |
skeletal system | 2.64e-16 | 100 |
connective tissue | 4.32e-10 | 371 |
lateral plate mesoderm | 4.43e-09 | 203 |
musculoskeletal system | 1.06e-07 | 167 |