FFCP PHASE1:Hg19::chr2:220083142..220083161,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:220083142..220083161,-
|short_description=p3@ABCB6
|description=CAGE_peak_3_at_ABCB6_5end
|association_with_transcript=0bp_to_ENST00000417678_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10058 | |EntrezGene=10058 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=47 | |HGNC=47 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000417678_5end | |||
|cluster_id=chr2:220083142..220083161,- | |||
|description=CAGE_peak_3_at_ABCB6_5end | |||
|id=chr2:220083142..220083161,- | |||
|ontology_enrichment_celltype=CL:0000055!1.21e-17!180;CL:0000222!4.23e-10!119;CL:0000136!7.35e-10!15;CL:0000183!2.67e-09!59;CL:0000187!2.43e-08!54;CL:0000393!3.02e-08!60;CL:0000211!3.02e-08!60;CL:0000057!3.22e-08!75;CL:0000680!4.88e-08!57;CL:0000056!4.88e-08!57;CL:0000355!4.88e-08!57;CL:0000220!1.36e-07!246;CL:0000192!1.39e-07!42;CL:0000514!1.39e-07!42;CL:0002321!1.52e-07!248 | |||
|ontology_enrichment_celltype_v019=CL:0000136;1.89e-12;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,6.83e-13,15;CL:0000222,5.25e-08,121;CL:0000057,7.99e-08,76;CL:0000192,1.29e-07,43;CL:0000514,1.29e-07,43;CL:0000187,3.49e-07,55;CL:0000680,9.80e-07,58;CL:0000056,9.80e-07,58;CL:0000355,9.80e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;9.32e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.64e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000475!2.96e-12!365;UBERON:0000477!9.61e-12!286;UBERON:0000025!1.19e-11!194;UBERON:0004111!2.22e-11!241;UBERON:0000483!2.01e-10!309;UBERON:0000119!2.99e-10!312;UBERON:0005256!3.22e-10!143;UBERON:0002100!1.66e-09!216;UBERON:0003914!3.59e-09!118;UBERON:0000481!1.10e-08!347;UBERON:0002385!2.89e-08!63;UBERON:0001015!2.89e-08!63;UBERON:0000383!2.89e-08!63;UBERON:0001134!2.95e-08!61;UBERON:0002036!2.95e-08!61;UBERON:0003082!2.95e-08!61;UBERON:0000914!6.34e-08!83;UBERON:0002329!6.34e-08!83;UBERON:0003077!6.34e-08!83;UBERON:0003059!6.34e-08!83;UBERON:0007282!6.34e-08!83;UBERON:0009618!6.34e-08!83;UBERON:0007285!6.34e-08!83;UBERON:0000490!8.80e-08!138;UBERON:0004872!1.08e-07!84;UBERON:0004290!2.40e-07!70;UBERON:0000486!5.46e-07!82;UBERON:0001009!9.24e-07!113 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000025,4.35e-10,192;UBERON:0003914,1.01e-09,117;UBERON:0005256,1.03e-08,122;UBERON:0004111,1.28e-08,240;UBERON:0004872,5.56e-08,83;UBERON:0000483,1.43e-07,306;UBERON:0003104,2.14e-07,160;UBERON:0009142,2.14e-07,160;UBERON:0001134,2.68e-07,62;UBERON:0002036,2.68e-07,62;UBERON:0003082,2.68e-07,62;UBERON:0002385,3.07e-07,64;UBERON:0001015,3.07e-07,64;UBERON:0000383,3.07e-07,64;UBERON:0000119,3.27e-07,309;UBERON:0007524,6.39e-07,73;UBERON:0001009,9.42e-07,112 | |||
|phase1_expression=3.63356758541113,6.20891519283851,5.77913056793482,8.00586386825043,16.0905993993824,6.10636966870258,7.59899634504932,6.31719873426831,6.26845507679612,0.737201809504527,2.79120467188971,0,0.263766978228454,0.495065411840187,0.662794751455832,0,1.20538905604795,0,1.95173119516203,0.246242116153576,1.63200552995402,1.25381888591235,1.14494394852423,0.547497700291537,0.251085279189606,0.0764134057479513,0.0821005894499457,0.0787107813136792,0,0,0,0.919421224478927,0.30120591877825,0,0,0,0,0,0,0,0.671746422719773,0.647787332037959,0.515151135268373,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0.661044872784862,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0.222820913770347,0,0,0,0.512365278902701,0.390178042679635,0,0.552700035571697,0,0,0,0,0.226618685395132,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,2.43806866313962,2.68280343881454,4.98663991189768,2.1686349143074,1.50401373190767,2.462390822334,0.795285947051099,5.83961844363163,0.283604451492204,0.221729397462564,0.43917392846563,0.916853528483988,0.728590576585084,2.22470665670658,0.649094787309367,0.348259474598534,0.26591592103773,0,0,0,1.39133685156694,0,0.694281003215189,1.13061588384802,0,0.825354125820202,1.04497483268405,1.8089173141853,1.42306505074684,0.33472061276467,1.61131726843659,3.04108842287405,1.70843440283719,0.735326160691737,0,0.446498641420399,0.898117490504679,1.23872628531654,0,1.89853131913626,0.366403487860815,0,3.87780264148325,0.436094052142534,1.98788780678127,1.51956613997496,1.98613771219828,1.43418310374407,1.41867352879343,4.48542080113846,0,1.72667283892012,1.55605517699883,1.21239604862719,0.490385709340376,2.57307626996383,2.30470369792,0.468642863667593,0.936480230490962,0,0.747243402759005,0.117434498643765,0.323745888736263,0.421352420106746,1.22492502752936,0.368502951935304,0.929932030581889,3.56400857184616,2.22540236350701,0,2.15585442544872,0.168336113954066,0.375355559615893,0.831192346452549,0.877955241761676,1.22595118319608,1.35214253015937,1.13432183160021,1.07633781413317,2.34913127700424,3.39091041855299,0.300091096084402,1.03052529238439,1.28820270022815,2.23340227597908,1.5189869901714,1.65642908774038,1.00973509697646,2.39329736469978,1.61646056818812,1.77504796258307,1.0075209822764,0.67824236924195,0,0.272746120590835,0.573609190778008,0.609868530647977,0.397589304964456,0.348581828608555,0.829288440122964,0.756962552626885,0.36497735907583,0,1.92972281457866,2.76269842704961,1.39310378409594,2.16563844500876,0.354920400119532,0.505754070234305,0.723033089650446,0.330881918197182,0.653638332277218,0.474541238222193,0.539325232640658,0,0.769494313892781,0,0,2.8810180793198,4.41026134156626,0,0.982827216677626,2.36315962672562,0,0.737930631258681,1.02940686179115,0,0,0.100528972411631,0.462942225792648,0,4.15973914111831,0,0.579652024875384,1.17408694235822,0.433099343283221,0,0.951270761172991,0.790204397959275,1.71697232418975,0.984868024349589,0.234004265139238,0.297262324577456,0.93733833986777,0.839910640994298,0.425325291727159,0.447792613514241,0,0,0.492663237895943,0.528290604079356,0,0.288239906833923,0,0.444485260045183,1.52795370223311,1.17217447210047,8.55362230113526,1.23392991243988,1.50171528921959,2.00078502841405,0.336393253036082,0.43596006883328,0.4400297149257,1.29271715757778,3.57656445851882,0,1.06375246633948,3.12022310734098,0.257207374262142,2.83698264046557,1.0656887160644,5.14720777169331,5.42621605391443,0.823240336780769,0.977208552881205,6.39705507736582,0,3.01439377059586,4.35766729300147,1.69954085009497,0,1.00451418286425,0,3.59437283237374,2.29723871668228,0,1.15825045334063,0.205476322550383,0.537182889719687,0,0,0,0,1.52456774533478,0,0.773288812777695,0.670065061337395,0.637938751653163,0,0,0,1.59498939234882,2.50085260529839,0,2.70362119990049,2.3195768543631,2.36553622550902,1.99140405487612,4.21324539618807,2.27407504055985,2.0694614258501,0,0.737476674166813,1.30325421702124,4.69922777910577,1.71571711905428,0,0,0,0.909382714338778,8.32177197552485,1.20956117331872,1.73675465473144,1.07423381301644,3.36792113319688,3.33161788064823,2.04682899626681,2.0911009748669,11.8734453155993,0.154209693802656,0.710246901252508,1.14978018419333,2.07701771673448,0.813472649219715,0.604297247958111,1.20303882181971,0.0920809889358963,2.75554675595056,1.82091168006717,4.58935452357984,1.35359883872224,0.462092022626489,0.784349769176855,0,0.422206515571503,2.27466768141793,1.02056223165909,0,0,0.541892875087706,2.00675909541941,0.254876273045038,2.49322802678617,0,3.28889814968902,2.87578996127391,0.512900250232778,0.328014645699706,0,0.721287081534056,1.28197250745681,1.89771849817352,0,0,8.03419649220798,0.96670718292122,0.616194468458578,1.22802939780904,0.551346289938122,0.537101224341368,0.870100163485371,0.511359764496605,2.31483292681517,0.495854746082934,0.384380134730212,0.255225424989168,0.50578890427775,3.71876439437829,4.40737285562896,1.3940745403212,0.308033580176089,2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| ||
|short_description=p3@ABCB6 | |||
}} | }} |
Latest revision as of 19:43, 24 September 2015
Short description: | p3@ABCB6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ABCB6_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000417678_5end |
EntrezGene: | ABCB6 |
HGNC: | 47 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 6.83e-13 | 15 |
mesodermal cell | 5.25e-08 | 121 |
fibroblast | 7.99e-08 | 76 |
smooth muscle cell | 1.29e-07 | 43 |
smooth muscle myoblast | 1.29e-07 | 43 |
muscle cell | 3.49e-07 | 55 |
muscle precursor cell | 9.80e-07 | 58 |
myoblast | 9.80e-07 | 58 |
multi-potent skeletal muscle stem cell | 9.80e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
tube | 4.35e-10 | 192 |
epithelial tube | 1.01e-09 | 117 |
trunk mesenchyme | 1.03e-08 | 122 |
anatomical conduit | 1.28e-08 | 240 |
splanchnic layer of lateral plate mesoderm | 5.56e-08 | 83 |
epithelium | 1.43e-07 | 306 |
mesenchyme | 2.14e-07 | 160 |
entire embryonic mesenchyme | 2.14e-07 | 160 |
skeletal muscle tissue | 2.68e-07 | 62 |
striated muscle tissue | 2.68e-07 | 62 |
myotome | 2.68e-07 | 62 |
muscle tissue | 3.07e-07 | 64 |
musculature | 3.07e-07 | 64 |
musculature of body | 3.07e-07 | 64 |
cell layer | 3.27e-07 | 309 |
dense mesenchyme tissue | 6.39e-07 | 73 |
circulatory system | 9.42e-07 | 112 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.64e-07 | 14 |