FFCP PHASE1:Hg19::chr2:216946500..216946548,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr2:216946500..216946548,-
|short_description=p1@PECR
|description=CAGE_peak_1_at_PECR_5end
|association_with_transcript=0bp_to_ENST00000265322,ENST00000442122...") |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55825 | |EntrezGene=55825 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18281 | |HGNC=18281 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BY49,B4DJS2 | |UniProt=Q9BY49,B4DJS2 | ||
|association_with_transcript=0bp_to_ENST00000265322,ENST00000442122,ENST00000474093,ENST00000487318,NM_018441,uc002vft.2,uc002vfu.1,uc010zjq.1_5end | |||
|cluster_id=chr2:216946500..216946548,- | |||
|description=CAGE_peak_1_at_PECR_5end | |||
|id=chr2:216946500..216946548,- | |||
|ontology_enrichment_celltype=CL:0000542!2.30e-11!53;CL:0000051!2.30e-11!53;CL:0000838!2.37e-11!52;CL:0000084!4.57e-09!25;CL:0000827!4.57e-09!25;CL:0000791!1.14e-08!18;CL:0000789!1.14e-08!18;CL:0002420!1.14e-08!18;CL:0002419!1.14e-08!18;CL:0000790!1.14e-08!18 | |||
|ontology_enrichment_celltype_v019=CL:0000084;3.27e-09;25!CL:0000791;1.11e-08;18!CL:0000789;1.11e-08;18!CL:0002419;1.11e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,2.17e-11,53;CL:0000051,2.17e-11,53;CL:0000838,2.24e-11,52;CL:0000084,4.57e-09,25;CL:0000827,4.57e-09,25;CL:0000791,1.14e-08,18;CL:0000789,1.14e-08,18;CL:0002420,1.14e-08,18;CL:0002419,1.14e-08,18;CL:0000790,1.14e-08,18 | |||
|ontology_enrichment_development_v019=CL:0000790;1.11e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!7.20e-09!94;UBERON:0001016!7.20e-09!94;UBERON:0005743!2.51e-08!86;UBERON:0007023!4.12e-08!115;UBERON:0001017!1.70e-07!82;UBERON:0000955!8.68e-07!69;UBERON:0006238!8.68e-07!69 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.65e-08,89;UBERON:0007023,6.00e-08,114;UBERON:0011216,1.41e-07,223;UBERON:0001017,1.60e-07,81;UBERON:0002346,2.78e-07,86;UBERON:0000955,8.11e-07,68;UBERON:0006238,8.11e-07,68 | |||
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| ||
|short_description=p1@PECR | |||
}} | }} |
Latest revision as of 05:47, 20 September 2015
Short description: | p1@PECR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PECR_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000265322, ENST00000442122, ENST00000474093, ENST00000487318, NM_018441, uc002vft.2, uc002vfu.1, uc010zjq.1_5end |
EntrezGene: | PECR |
HGNC: | 18281 |
UniProt: | Q9BY49B4DJS2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 2.17e-11 | 53 |
common lymphoid progenitor | 2.17e-11 | 53 |
lymphoid lineage restricted progenitor cell | 2.24e-11 | 52 |
T cell | 4.57e-09 | 25 |
pro-T cell | 4.57e-09 | 25 |
mature alpha-beta T cell | 1.14e-08 | 18 |
alpha-beta T cell | 1.14e-08 | 18 |
immature T cell | 1.14e-08 | 18 |
mature T cell | 1.14e-08 | 18 |
immature alpha-beta T cell | 1.14e-08 | 18 |
Ontology term | p-value | n |
---|---|---|
nervous system | 4.65e-08 | 89 |
adult organism | 6.00e-08 | 114 |
organ system subdivision | 1.41e-07 | 223 |
central nervous system | 1.60e-07 | 81 |
neurectoderm | 2.78e-07 | 86 |
brain | 8.11e-07 | 68 |
future brain | 8.11e-07 | 68 |