FFCP PHASE1:Mm9::chr8:52001562..52001578,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1448 | |MCL_coexpression_id=1448 | ||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr8:52001562..52001578,- | |||
|description=CAGE_peak_at_chr8:52001562..52001578,- | |description=CAGE_peak_at_chr8:52001562..52001578,- | ||
|id=chr8:52001562..52001578,- | |id=chr8:52001562..52001578,- | ||
|ontology_enrichment_celltype=CL:0000540!3.42e-17!33;CL:0000047!3.42e-17!33;CL:0000031!3.42e-17!33;CL:0000404!3.42e-17!33;CL:0000393!2.57e-12!39;CL:0000211!2.57e-12!39;CL:0000117!3.97e-11!23;CL:0000337!3.97e-11!23;CL:0000221!4.73e-11!44;CL:0000133!4.73e-11!44;CL:0002319!6.74e-11!43;CL:0000055!1.43e-07!50;CL:0000107!1.57e-07!9 | |ontology_enrichment_celltype=CL:0000540!3.42e-17!33;CL:0000047!3.42e-17!33;CL:0000031!3.42e-17!33;CL:0000404!3.42e-17!33;CL:0000393!2.57e-12!39;CL:0000211!2.57e-12!39;CL:0000117!3.97e-11!23;CL:0000337!3.97e-11!23;CL:0000221!4.73e-11!44;CL:0000133!4.73e-11!44;CL:0002319!6.74e-11!43;CL:0000055!1.43e-07!50;CL:0000107!1.57e-07!9 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.24e-17,33;CL:0000047,1.24e-17,33;CL:0000031,1.24e-17,33;CL:0000404,1.24e-17,33;CL:0000393,2.24e-13,39;CL:0000211,2.24e-13,39;CL:0002319,3.05e-11,43;CL:0000117,8.26e-11,23;CL:0000337,8.26e-11,23;CL:0000221,8.93e-11,44;CL:0000133,8.93e-11,44;CL:0000107,2.14e-09,9 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.15e-18!102;UBERON:0000924!1.15e-18!102;UBERON:0006601!1.15e-18!102;UBERON:0002346!1.31e-16!71;UBERON:0003075!1.31e-16!71;UBERON:0007284!1.31e-16!71;UBERON:0001017!3.10e-16!73;UBERON:0005743!3.10e-16!73;UBERON:0000073!3.62e-16!75;UBERON:0001016!3.62e-16!75;UBERON:0000033!1.39e-10!63;UBERON:0003056!1.58e-09!49;UBERON:0001049!3.81e-09!52;UBERON:0005068!3.81e-09!52;UBERON:0006241!3.81e-09!52;UBERON:0007135!3.81e-09!52;UBERON:0000955!7.63e-08!50;UBERON:0006238!7.63e-08!50;UBERON:0002410!1.57e-07!9;UBERON:0002616!2.81e-07!49;UBERON:0000010!8.28e-07!11 | |ontology_enrichment_uberon=UBERON:0004121!1.15e-18!102;UBERON:0000924!1.15e-18!102;UBERON:0006601!1.15e-18!102;UBERON:0002346!1.31e-16!71;UBERON:0003075!1.31e-16!71;UBERON:0007284!1.31e-16!71;UBERON:0001017!3.10e-16!73;UBERON:0005743!3.10e-16!73;UBERON:0000073!3.62e-16!75;UBERON:0001016!3.62e-16!75;UBERON:0000033!1.39e-10!63;UBERON:0003056!1.58e-09!49;UBERON:0001049!3.81e-09!52;UBERON:0005068!3.81e-09!52;UBERON:0006241!3.81e-09!52;UBERON:0007135!3.81e-09!52;UBERON:0000955!7.63e-08!50;UBERON:0006238!7.63e-08!50;UBERON:0002410!1.57e-07!9;UBERON:0002616!2.81e-07!49;UBERON:0000010!8.28e-07!11 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.97e-14,73;UBERON:0001016,3.91e-13,75;UBERON:0004121,1.22e-12,95;UBERON:0000924,1.22e-12,95;UBERON:0006601,1.22e-12,95;UBERON:0002346,1.54e-10,64;UBERON:0003075,1.54e-10,64;UBERON:0007284,1.54e-10,64;UBERON:0002410,2.14e-09,9;UBERON:0010371,6.95e-08,73;UBERON:0002420,2.36e-07,8;UBERON:0007245,2.36e-07,8;UBERON:0010009,2.36e-07,8;UBERON:0010011,2.36e-07,8;UBERON:0000454,2.36e-07,8;UBERON:0000010,3.63e-07,11;UBERON:0000073,7.34e-07,54;UBERON:0010314,9.19e-07,92 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.595303031057488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.48570905180512,11.1088105647127,6.33831403506179,0,0,0,0,0,0,0,0.933206510776299,0.270011876663381,0.630974884054146,3.71346279724945,5.30084498283872,1.22490799214954,0.479227355091182,0,2.20231761998777,3.19218345212969,2.4577045320999,12.6610836220986,7.593474419,8.85552729946492,1.11673199600552,3.37657566019008,5.50073691996516,11.490514833473,6.97621235915604,9.31997229126503,0.075726193333184,0.0755715601067855,0,0,0,0,0,0,0.140444420131752,0,0,0,0.704217098883403,0,0,0,0,0,0,0,0,0.593768556259299,3.29622120855658,1.82679286987285,2.30615497256059,3.61734337326294,3.41007250693544,0,0,0,0,0.323533699894818,0,0,0,0.292780797011547,0.41889341362691,0,0,0,0,7.63932260964596,3.20250421973039,2.38743269014442,1.39059456153821,1.53429274398198,5.194701113989,3.89379031362618,1.2220723662038,0.373220911830279,0.505445516867349,3.78795340595653,0.910843100738926,0.919608417733892,1.80062129805349,3.61691562805716,3.53789795586905,2.8185018462667,1.78033276663485,6.98499100995342,0.215567992932842,1.32374256117473,1.75951124163949,1.09597866213787,1.11218899690239,0,0.205782136407943,1.59227413454795,0,0,0,0,0.234526059981096,0.720248245844059,0,0,0.154267112887378,0,0,0,0,0,0,0,0,0,3.99550902271842,12.1427442607556,0,0,0.853153002140936,1.39342003116263,0.38660238396628,0.80673409849337,1.55664630691409,0.760902504450237,0,0.658795818896044,0.502670417600539,0,0.38992817423824,0,0,0.199141273254367,0.758671603812327,1.25673363870702,1.1270773567308,0.407302655690628,0.193952487167626,0.49095073923223,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.947457058852424,0.325929952884052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.76605648986571,2.57865710502847,0,0,6.62567260774139,7.41833614163613,5.17016154558717,2.62865677747807,3.34198011123591,6.79383673893198,6.07216052512342,11.9824901743638,9.88219444866309,14.4594592389813,0,0.534196811001766,0.488660878060728,0,0,0.242780636154981,0,0,0,0,0.516856586336442,0,0,0,0,0,0.680879211507576,1.08036656418786,0.258717367565509,1.28602221018955,1.41872186913819,0.891844088010353,0.987294123612726,0.608929898229199,0,0,0,0,0.161464426695906,0.120625849856312,0,0,0,2.03967832211561,0,0.206386867963223,0,0,0,0,0,0,0,0,0.316335993581135,1.21991680276109,1.62008011232702,3.13632444021703,1.52853794622324,1.34864346384821,0.578574190077352,0.523511883968059,0.259229946583586,0,0,0.149516546043979,0,0,0,0,0,0.2604087696879,0,0,0,0,0,0,0,0,0,0,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343706364687375,0.685082519770642,0,2.02506750069542,0.45032120322422,0,0,0.207574695168353,5.58634822761443,2.73173769206615,1.70174701947806,1.67690530102386,1.47074806760011,2.00022055021454,2.26638562962784,5.13470735346904,3.03236654116557,4.05566879824384,2.82939512079114,3.37109426891577,3.52138338226781,3.0440798546475,1.90517476513229,3.24476112645595,5.20854895252004,2.47251540481984,3.82717192349433,2.40008476669791,3.19456451086807,4.05341522910446,2.76158191601424,3.01150017329058,3.21535509988371,1.64635175585495,4.73525480588117,2.71608227691724,3.92799590160417,3.08451047122853,3.74317033027141,2.04615521584845,3.40861050609125,1.15743966588685,2.99772693525535,1.40358965067245,1.28922632428979,0.382576664137687,0,0.231867835620421 | |phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.595303031057488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.48570905180512,11.1088105647127,6.33831403506179,0,0,0,0,0,0,0,0.933206510776299,0.270011876663381,0.630974884054146,3.71346279724945,5.30084498283872,1.22490799214954,0.479227355091182,0,2.20231761998777,3.19218345212969,2.4577045320999,12.6610836220986,7.593474419,8.85552729946492,1.11673199600552,3.37657566019008,5.50073691996516,11.490514833473,6.97621235915604,9.31997229126503,0.075726193333184,0.0755715601067855,0,0,0,0,0,0,0.140444420131752,0,0,0,0.704217098883403,0,0,0,0,0,0,0,0,0.593768556259299,3.29622120855658,1.82679286987285,2.30615497256059,3.61734337326294,3.41007250693544,0,0,0,0,0.323533699894818,0,0,0,0.292780797011547,0.41889341362691,0,0,0,0,7.63932260964596,3.20250421973039,2.38743269014442,1.39059456153821,1.53429274398198,5.194701113989,3.89379031362618,1.2220723662038,0.373220911830279,0.505445516867349,3.78795340595653,0.910843100738926,0.919608417733892,1.80062129805349,3.61691562805716,3.53789795586905,2.8185018462667,1.78033276663485,6.98499100995342,0.215567992932842,1.32374256117473,1.75951124163949,1.09597866213787,1.11218899690239,0,0.205782136407943,1.59227413454795,0,0,0,0,0.234526059981096,0.720248245844059,0,0,0.154267112887378,0,0,0,0,0,0,0,0,0,3.99550902271842,12.1427442607556,0,0,0.853153002140936,1.39342003116263,0.38660238396628,0.80673409849337,1.55664630691409,0.760902504450237,0,0.658795818896044,0.502670417600539,0,0.38992817423824,0,0,0.199141273254367,0.758671603812327,1.25673363870702,1.1270773567308,0.407302655690628,0.193952487167626,0.49095073923223,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.947457058852424,0.325929952884052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.76605648986571,2.57865710502847,0,0,6.62567260774139,7.41833614163613,5.17016154558717,2.62865677747807,3.34198011123591,6.79383673893198,6.07216052512342,11.9824901743638,9.88219444866309,14.4594592389813,0,0.534196811001766,0.488660878060728,0,0,0.242780636154981,0,0,0,0,0.516856586336442,0,0,0,0,0,0.680879211507576,1.08036656418786,0.258717367565509,1.28602221018955,1.41872186913819,0.891844088010353,0.987294123612726,0.608929898229199,0,0,0,0,0.161464426695906,0.120625849856312,0,0,0,2.03967832211561,0,0.206386867963223,0,0,0,0,0,0,0,0,0.316335993581135,1.21991680276109,1.62008011232702,3.13632444021703,1.52853794622324,1.34864346384821,0.578574190077352,0.523511883968059,0.259229946583586,0,0,0.149516546043979,0,0,0,0,0,0.2604087696879,0,0,0,0,0,0,0,0,0,0,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343706364687375,0.685082519770642,0,2.02506750069542,0.45032120322422,0,0,0.207574695168353,5.58634822761443,2.73173769206615,1.70174701947806,1.67690530102386,1.47074806760011,2.00022055021454,2.26638562962784,5.13470735346904,3.03236654116557,4.05566879824384,2.82939512079114,3.37109426891577,3.52138338226781,3.0440798546475,1.90517476513229,3.24476112645595,5.20854895252004,2.47251540481984,3.82717192349433,2.40008476669791,3.19456451086807,4.05341522910446,2.76158191601424,3.01150017329058,3.21535509988371,1.64635175585495,4.73525480588117,2.71608227691724,3.92799590160417,3.08451047122853,3.74317033027141,2.04615521584845,3.40861050609125,1.15743966588685,2.99772693525535,1.40358965067245,1.28922632428979,0.382576664137687,0,0.231867835620421 | ||
|short_description=p@chr8:52001562..52001578,- | |short_description=p@chr8:52001562..52001578,- | ||
}} | }} |
Latest revision as of 21:51, 3 August 2015
Short description: | p@chr8:52001562..52001578, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr8:52001562..52001578, - |
Coexpression cluster: | MCL_coexpression_mm9:1448 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.24e-17 | 33 |
neuronal stem cell | 1.24e-17 | 33 |
neuroblast | 1.24e-17 | 33 |
electrically signaling cell | 1.24e-17 | 33 |
electrically responsive cell | 2.24e-13 | 39 |
electrically active cell | 2.24e-13 | 39 |
neural cell | 3.05e-11 | 43 |
CNS neuron (sensu Vertebrata) | 8.26e-11 | 23 |
neuroblast (sensu Vertebrata) | 8.26e-11 | 23 |
ectodermal cell | 8.93e-11 | 44 |
neurectodermal cell | 8.93e-11 | 44 |
autonomic neuron | 2.14e-09 | 9 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 6.97e-14 | 73 |
nervous system | 3.91e-13 | 75 |
ectoderm-derived structure | 1.22e-12 | 95 |
ectoderm | 1.22e-12 | 95 |
presumptive ectoderm | 1.22e-12 | 95 |
neurectoderm | 1.54e-10 | 64 |
neural plate | 1.54e-10 | 64 |
presumptive neural plate | 1.54e-10 | 64 |
autonomic nervous system | 2.14e-09 | 9 |
ecto-epithelium | 6.95e-08 | 73 |
basal ganglion | 2.36e-07 | 8 |
nuclear complex of neuraxis | 2.36e-07 | 8 |
aggregate regional part of brain | 2.36e-07 | 8 |
collection of basal ganglia | 2.36e-07 | 8 |
cerebral subcortex | 2.36e-07 | 8 |
peripheral nervous system | 3.63e-07 | 11 |
regional part of nervous system | 7.34e-07 | 54 |
structure with developmental contribution from neural crest | 9.19e-07 | 92 |