FFCP PHASE1:Mm9::chr16:91225691..91225700,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=50913 | |EntrezGene=50913 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=519 | |MCL_coexpression_id=519 | ||
|TSSclassifier=NA | |||
|UniProt=Q9EQW6,Q542S0 | |UniProt=Q9EQW6,Q542S0 | ||
|association_with_transcript=-94bp_to_ENSMUST00000035608,NM_016967,uc007zxe.1_5end | |association_with_transcript=-94bp_to_ENSMUST00000035608,NM_016967,uc007zxe.1_5end | ||
|cluster_id=chr16:91225691..91225700,+ | |||
|description=CAGE_peak_5_at_Olig2_5end | |description=CAGE_peak_5_at_Olig2_5end | ||
|id=chr16:91225691..91225700,+ | |id=chr16:91225691..91225700,+ | ||
|ontology_enrichment_celltype=CL:0000117!1.48e-16!23;CL:0000337!1.48e-16!23;CL:0002319!2.96e-16!43;CL:0000221!9.79e-16!44;CL:0000133!9.79e-16!44;CL:0000540!3.54e-13!33;CL:0000047!3.54e-13!33;CL:0000031!3.54e-13!33;CL:0000404!3.54e-13!33;CL:0000055!4.56e-13!50;CL:0000393!2.17e-10!39;CL:0000211!2.17e-10!39;CL:0002321!1.41e-07!70;CL:0000220!1.41e-07!70 | |ontology_enrichment_celltype=CL:0000117!1.48e-16!23;CL:0000337!1.48e-16!23;CL:0002319!2.96e-16!43;CL:0000221!9.79e-16!44;CL:0000133!9.79e-16!44;CL:0000540!3.54e-13!33;CL:0000047!3.54e-13!33;CL:0000031!3.54e-13!33;CL:0000404!3.54e-13!33;CL:0000055!4.56e-13!50;CL:0000393!2.17e-10!39;CL:0000211!2.17e-10!39;CL:0002321!1.41e-07!70;CL:0000220!1.41e-07!70 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.41e-24,23;CL:0000337,2.41e-24,23;CL:0002319,1.29e-20,43;CL:0000221,4.21e-20,44;CL:0000133,4.21e-20,44;CL:0000540,1.66e-16,33;CL:0000047,1.66e-16,33;CL:0000031,1.66e-16,33;CL:0000404,1.66e-16,33;CL:0002610,8.21e-16,3;CL:0000393,1.00e-13,39;CL:0000211,1.00e-13,39;CL:0002321,7.16e-12,70;CL:0000878,1.08e-11,2;CL:0000129,1.08e-11,2;CL:0002611,4.38e-11,2;CL:0002614,1.13e-07,3;CL:0000723,2.47e-07,91;CL:0000048,2.47e-07,91;CL:0002608,3.72e-07,3;CL:0000034,9.39e-07,97 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.14e-29!73;UBERON:0005743!5.14e-29!73;UBERON:0000073!5.93e-28!75;UBERON:0001016!5.93e-28!75;UBERON:0004121!7.70e-23!102;UBERON:0000924!7.70e-23!102;UBERON:0006601!7.70e-23!102;UBERON:0001049!1.25e-22!52;UBERON:0005068!1.25e-22!52;UBERON:0006241!1.25e-22!52;UBERON:0007135!1.25e-22!52;UBERON:0000955!7.32e-22!50;UBERON:0006238!7.32e-22!50;UBERON:0000033!1.67e-21!63;UBERON:0002616!9.22e-21!49;UBERON:0002346!1.25e-19!71;UBERON:0003075!1.25e-19!71;UBERON:0007284!1.25e-19!71;UBERON:0002020!3.04e-17!34;UBERON:0003056!9.37e-14!49;UBERON:0007811!2.37e-13!86;UBERON:0003076!3.81e-13!12;UBERON:0003057!3.81e-13!12;UBERON:0002791!9.01e-13!29;UBERON:0003528!9.01e-13!29;UBERON:0001893!9.01e-13!29;UBERON:0003080!4.95e-12!40;UBERON:0000153!1.79e-11!94;UBERON:0002780!4.83e-11!39;UBERON:0001890!4.83e-11!39;UBERON:0006240!4.83e-11!39;UBERON:0002420!3.95e-10!8;UBERON:0007245!3.95e-10!8;UBERON:0010009!3.95e-10!8;UBERON:0010011!3.95e-10!8;UBERON:0000454!3.95e-10!8;UBERON:0000369!2.01e-08!5;UBERON:0002435!2.01e-08!5;UBERON:0000204!2.01e-08!5;UBERON:0010082!2.01e-08!5;UBERON:0002240!8.79e-08!6;UBERON:0005174!8.79e-08!6;UBERON:0001137!8.79e-08!6;UBERON:0002298!1.42e-07!6;UBERON:0004733!6.80e-07!6;UBERON:0004732!6.80e-07!6;UBERON:0002028!6.80e-07!6;UBERON:0007277!6.80e-07!6 | |ontology_enrichment_uberon=UBERON:0001017!5.14e-29!73;UBERON:0005743!5.14e-29!73;UBERON:0000073!5.93e-28!75;UBERON:0001016!5.93e-28!75;UBERON:0004121!7.70e-23!102;UBERON:0000924!7.70e-23!102;UBERON:0006601!7.70e-23!102;UBERON:0001049!1.25e-22!52;UBERON:0005068!1.25e-22!52;UBERON:0006241!1.25e-22!52;UBERON:0007135!1.25e-22!52;UBERON:0000955!7.32e-22!50;UBERON:0006238!7.32e-22!50;UBERON:0000033!1.67e-21!63;UBERON:0002616!9.22e-21!49;UBERON:0002346!1.25e-19!71;UBERON:0003075!1.25e-19!71;UBERON:0007284!1.25e-19!71;UBERON:0002020!3.04e-17!34;UBERON:0003056!9.37e-14!49;UBERON:0007811!2.37e-13!86;UBERON:0003076!3.81e-13!12;UBERON:0003057!3.81e-13!12;UBERON:0002791!9.01e-13!29;UBERON:0003528!9.01e-13!29;UBERON:0001893!9.01e-13!29;UBERON:0003080!4.95e-12!40;UBERON:0000153!1.79e-11!94;UBERON:0002780!4.83e-11!39;UBERON:0001890!4.83e-11!39;UBERON:0006240!4.83e-11!39;UBERON:0002420!3.95e-10!8;UBERON:0007245!3.95e-10!8;UBERON:0010009!3.95e-10!8;UBERON:0010011!3.95e-10!8;UBERON:0000454!3.95e-10!8;UBERON:0000369!2.01e-08!5;UBERON:0002435!2.01e-08!5;UBERON:0000204!2.01e-08!5;UBERON:0010082!2.01e-08!5;UBERON:0002240!8.79e-08!6;UBERON:0005174!8.79e-08!6;UBERON:0001137!8.79e-08!6;UBERON:0002298!1.42e-07!6;UBERON:0004733!6.80e-07!6;UBERON:0004732!6.80e-07!6;UBERON:0002028!6.80e-07!6;UBERON:0007277!6.80e-07!6 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.22e-20,73;UBERON:0001016,3.57e-19,75;UBERON:0000073,2.25e-18,54;UBERON:0004684,8.21e-16,3;UBERON:0002275,8.21e-16,3;UBERON:0004121,1.19e-14,95;UBERON:0000924,1.19e-14,95;UBERON:0006601,1.19e-14,95;UBERON:0003076,1.87e-14,12;UBERON:0003057,1.87e-14,12;UBERON:0001049,5.98e-14,52;UBERON:0005068,5.98e-14,52;UBERON:0006241,5.98e-14,52;UBERON:0007135,5.98e-14,52;UBERON:0002240,1.76e-13,6;UBERON:0005174,1.76e-13,6;UBERON:0001137,1.76e-13,6;UBERON:0002256,4.38e-11,2;UBERON:0002346,5.70e-11,64;UBERON:0003075,5.70e-11,64;UBERON:0007284,5.70e-11,64;UBERON:0002020,1.85e-10,34;UBERON:0001948,1.30e-09,5;UBERON:0002315,1.30e-09,5;UBERON:0010371,2.24e-09,73;UBERON:0002038,1.13e-07,3;UBERON:0009663,1.13e-07,3;UBERON:0009661,1.13e-07,3;UBERON:0000125,1.13e-07,3;UBERON:0002308,1.13e-07,3;UBERON:0002616,2.34e-07,46;UBERON:0000955,3.55e-07,47;UBERON:0006238,3.55e-07,47;UBERON:0010314,5.03e-07,92 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09012578190223,0,0.58328969722285,0.139986421625363,0,0,0,0,0,0,0,0.202316460859598,0,0,0.677689064138264,0,0,0,0,2.69640099466564,3.07374644257244,0,0,0.210324961351382,1.71390590642282,1.54607978666129,1.10241719293459,1.24599112323707,0,2.20231761998777,1.27687338085188,1.84327839907492,0.791317726381163,0.548925861614458,1.04182674111352,1.67509799400829,0,1.68078072554491,1.47314292736834,0.569486723196412,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.585561594023094,0.209446706813455,0,0,0,0,0.599162557619291,0.915001205637253,0.251308704225729,0,0,1.45451631191692,0.648965052271031,0,0,0,0,0,0,0.360124259610698,0,0.748401490664606,0.384341160854549,0.468508622798644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308713837137853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,1.99259867206745,0,0,0,0,0,0,0.222798674082394,0.849229592366497,0,0,0,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21183207086382,0,0,0,0,0,0,0,1.29797711407357,0,0,0,0,0,0.228778173206523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0,0.572895513439397,0.171853182343688,1.37016503954128,0,0,0,0,0.51776031175182,0,0,0,0,0,0,0.222246727801615,0,0,0,0,0.188626341386076,0,0,0.0574354689556133,0,0,0,0,0,0,0,0.238436189947321,0,0.0941093804153306,0.0846146078916765,0,0,0.271608227691724,0,0.118635018124174,0,0,0,0,0.749431733813838,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09012578190223,0,0.58328969722285,0.139986421625363,0,0,0,0,0,0,0,0.202316460859598,0,0,0.677689064138264,0,0,0,0,2.69640099466564,3.07374644257244,0,0,0.210324961351382,1.71390590642282,1.54607978666129,1.10241719293459,1.24599112323707,0,2.20231761998777,1.27687338085188,1.84327839907492,0.791317726381163,0.548925861614458,1.04182674111352,1.67509799400829,0,1.68078072554491,1.47314292736834,0.569486723196412,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.585561594023094,0.209446706813455,0,0,0,0,0.599162557619291,0.915001205637253,0.251308704225729,0,0,1.45451631191692,0.648965052271031,0,0,0,0,0,0,0.360124259610698,0,0.748401490664606,0.384341160854549,0.468508622798644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308713837137853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,1.99259867206745,0,0,0,0,0,0,0.222798674082394,0.849229592366497,0,0,0,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21183207086382,0,0,0,0,0,0,0,1.29797711407357,0,0,0,0,0,0.228778173206523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0,0.572895513439397,0.171853182343688,1.37016503954128,0,0,0,0,0.51776031175182,0,0,0,0,0,0,0.222246727801615,0,0,0,0,0.188626341386076,0,0,0.0574354689556133,0,0,0,0,0,0,0,0.238436189947321,0,0.0941093804153306,0.0846146078916765,0,0,0.271608227691724,0,0.118635018124174,0,0,0,0,0.749431733813838,0,0,0,0,0 | ||
|short_description=p5@Olig2 | |short_description=p5@Olig2 | ||
}} | }} |
Latest revision as of 20:19, 25 September 2015
Short description: | p5@Olig2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Olig2_5end |
Coexpression cluster: | MCL_coexpression_mm9:519 |
Association with transcript: | -94bp_to_ENSMUST00000035608, NM_016967, uc007zxe.1_5end |
EntrezGene: | Olig2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.41e-24 | 23 |
neuroblast (sensu Vertebrata) | 2.41e-24 | 23 |
neural cell | 1.29e-20 | 43 |
ectodermal cell | 4.21e-20 | 44 |
neurectodermal cell | 4.21e-20 | 44 |
neuron | 1.66e-16 | 33 |
neuronal stem cell | 1.66e-16 | 33 |
neuroblast | 1.66e-16 | 33 |
electrically signaling cell | 1.66e-16 | 33 |
raphe nuclei neuron | 8.21e-16 | 3 |
electrically responsive cell | 1.00e-13 | 39 |
electrically active cell | 1.00e-13 | 39 |
embryonic cell | 7.16e-12 | 70 |
central nervous system macrophage | 1.08e-11 | 2 |
microglial cell | 1.08e-11 | 2 |
neuron of the dorsal spinal cord | 4.38e-11 | 2 |
neuron of the substantia nigra | 1.13e-07 | 3 |
somatic stem cell | 2.47e-07 | 91 |
multi fate stem cell | 2.47e-07 | 91 |
hippocampal neuron | 3.72e-07 | 3 |
stem cell | 9.39e-07 | 97 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 9.22e-20 | 73 |
nervous system | 3.57e-19 | 75 |
regional part of nervous system | 2.25e-18 | 54 |
raphe nuclei | 8.21e-16 | 3 |
reticular formation | 8.21e-16 | 3 |
ectoderm-derived structure | 1.19e-14 | 95 |
ectoderm | 1.19e-14 | 95 |
presumptive ectoderm | 1.19e-14 | 95 |
posterior neural tube | 1.87e-14 | 12 |
chordal neural plate | 1.87e-14 | 12 |
neural tube | 5.98e-14 | 52 |
neural rod | 5.98e-14 | 52 |
future spinal cord | 5.98e-14 | 52 |
neural keel | 5.98e-14 | 52 |
spinal cord | 1.76e-13 | 6 |
dorsal region element | 1.76e-13 | 6 |
dorsum | 1.76e-13 | 6 |
dorsal horn of spinal cord | 4.38e-11 | 2 |
neurectoderm | 5.70e-11 | 64 |
neural plate | 5.70e-11 | 64 |
presumptive neural plate | 5.70e-11 | 64 |
gray matter | 1.85e-10 | 34 |
regional part of spinal cord | 1.30e-09 | 5 |
gray matter of spinal cord | 1.30e-09 | 5 |
ecto-epithelium | 2.24e-09 | 73 |
substantia nigra | 1.13e-07 | 3 |
telencephalic nucleus | 1.13e-07 | 3 |
midbrain nucleus | 1.13e-07 | 3 |
neural nucleus | 1.13e-07 | 3 |
nucleus of brain | 1.13e-07 | 3 |
regional part of brain | 2.34e-07 | 46 |
brain | 3.55e-07 | 47 |
future brain | 3.55e-07 | 47 |
structure with developmental contribution from neural crest | 5.03e-07 | 92 |