FFCP PHASE1:Mm9::chr7:112781974..112781991,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=55992 | |EntrezGene=55992 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |MCL_coexpression_id=1 | ||
|TSSclassifier=NA | |||
|UniProt=D3YUY7 | |UniProt=D3YUY7 | ||
|association_with_transcript=7bp_to_ENSMUST00000147044_5end | |association_with_transcript=7bp_to_ENSMUST00000147044_5end | ||
|cluster_id=chr7:112781974..112781991,- | |||
|description=CAGE_peak_3_at_Trim3_5end | |description=CAGE_peak_3_at_Trim3_5end | ||
|id=chr7:112781974..112781991,- | |id=chr7:112781974..112781991,- | ||
|ontology_enrichment_celltype=CL:0000055!1.08e-09!50;CL:0002319!1.82e-08!43;CL:0000221!2.09e-08!44;CL:0000133!2.09e-08!44;CL:0000393!2.68e-07!39;CL:0000211!2.68e-07!39;CL:0002321!3.00e-07!70;CL:0000220!3.00e-07!70 | |ontology_enrichment_celltype=CL:0000055!1.08e-09!50;CL:0002319!1.82e-08!43;CL:0000221!2.09e-08!44;CL:0000133!2.09e-08!44;CL:0000393!2.68e-07!39;CL:0000211!2.68e-07!39;CL:0002321!3.00e-07!70;CL:0000220!3.00e-07!70 | ||
|ontology_enrichment_celltype_v019_2=CL:0002319,2.89e-09,43;CL:0000221,6.75e-09,44;CL:0000133,6.75e-09,44;CL:0000393,2.10e-08,39;CL:0000211,2.10e-08,39;CL:0002321,7.76e-08,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.27e-21!75;UBERON:0001016!1.27e-21!75;UBERON:0001017!1.45e-21!73;UBERON:0005743!1.45e-21!73;UBERON:0004121!1.72e-19!102;UBERON:0000924!1.72e-19!102;UBERON:0006601!1.72e-19!102;UBERON:0001049!1.20e-15!52;UBERON:0005068!1.20e-15!52;UBERON:0006241!1.20e-15!52;UBERON:0007135!1.20e-15!52;UBERON:0002346!5.50e-15!71;UBERON:0003075!5.50e-15!71;UBERON:0007284!5.50e-15!71;UBERON:0000955!6.81e-15!50;UBERON:0006238!6.81e-15!50;UBERON:0002616!2.01e-14!49;UBERON:0000033!2.49e-13!63;UBERON:0000025!4.09e-11!114;UBERON:0004111!4.23e-11!122;UBERON:0002020!1.56e-10!34;UBERON:0003080!9.00e-10!40;UBERON:0003056!1.79e-09!49;UBERON:0002780!2.79e-09!39;UBERON:0001890!2.79e-09!39;UBERON:0006240!2.79e-09!39;UBERON:0002619!1.28e-08!17;UBERON:0002791!2.33e-08!29;UBERON:0003528!2.33e-08!29;UBERON:0001893!2.33e-08!29;UBERON:0002021!4.76e-08!10;UBERON:0000411!4.76e-08!10;UBERON:0001950!4.76e-08!10;UBERON:0003076!2.61e-07!12;UBERON:0003057!2.61e-07!12;UBERON:0000956!4.99e-07!21;UBERON:0001869!4.99e-07!21;UBERON:0000203!4.99e-07!21 | |ontology_enrichment_uberon=UBERON:0000073!1.27e-21!75;UBERON:0001016!1.27e-21!75;UBERON:0001017!1.45e-21!73;UBERON:0005743!1.45e-21!73;UBERON:0004121!1.72e-19!102;UBERON:0000924!1.72e-19!102;UBERON:0006601!1.72e-19!102;UBERON:0001049!1.20e-15!52;UBERON:0005068!1.20e-15!52;UBERON:0006241!1.20e-15!52;UBERON:0007135!1.20e-15!52;UBERON:0002346!5.50e-15!71;UBERON:0003075!5.50e-15!71;UBERON:0007284!5.50e-15!71;UBERON:0000955!6.81e-15!50;UBERON:0006238!6.81e-15!50;UBERON:0002616!2.01e-14!49;UBERON:0000033!2.49e-13!63;UBERON:0000025!4.09e-11!114;UBERON:0004111!4.23e-11!122;UBERON:0002020!1.56e-10!34;UBERON:0003080!9.00e-10!40;UBERON:0003056!1.79e-09!49;UBERON:0002780!2.79e-09!39;UBERON:0001890!2.79e-09!39;UBERON:0006240!2.79e-09!39;UBERON:0002619!1.28e-08!17;UBERON:0002791!2.33e-08!29;UBERON:0003528!2.33e-08!29;UBERON:0001893!2.33e-08!29;UBERON:0002021!4.76e-08!10;UBERON:0000411!4.76e-08!10;UBERON:0001950!4.76e-08!10;UBERON:0003076!2.61e-07!12;UBERON:0003057!2.61e-07!12;UBERON:0000956!4.99e-07!21;UBERON:0001869!4.99e-07!21;UBERON:0000203!4.99e-07!21 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.61e-29,73;UBERON:0001016,7.45e-28,75;UBERON:0000073,3.11e-24,54;UBERON:0001049,2.97e-22,52;UBERON:0005068,2.97e-22,52;UBERON:0006241,2.97e-22,52;UBERON:0007135,2.97e-22,52;UBERON:0004121,1.65e-20,95;UBERON:0000924,1.65e-20,95;UBERON:0006601,1.65e-20,95;UBERON:0002346,5.21e-19,64;UBERON:0003075,5.21e-19,64;UBERON:0007284,5.21e-19,64;UBERON:0000955,4.30e-18,47;UBERON:0006238,4.30e-18,47;UBERON:0002616,2.55e-17,46;UBERON:0002020,4.32e-17,34;UBERON:0010371,4.07e-15,73;UBERON:0000025,3.46e-14,114;UBERON:0002021,2.52e-13,10;UBERON:0000411,2.52e-13,10;UBERON:0001950,2.52e-13,10;UBERON:0003080,2.82e-13,40;UBERON:0003528,3.35e-13,29;UBERON:0002791,3.35e-13,29;UBERON:0001893,3.35e-13,29;UBERON:0004111,5.99e-13,122;UBERON:0002619,9.02e-13,17;UBERON:0002780,1.87e-12,39;UBERON:0001890,1.87e-12,39;UBERON:0006240,1.87e-12,39;UBERON:0010314,9.06e-12,92;UBERON:0000956,3.51e-11,21;UBERON:0001869,3.51e-11,21;UBERON:0000203,3.51e-11,21;UBERON:0003076,1.60e-10,12;UBERON:0003057,1.60e-10,12;UBERON:0003056,3.57e-10,49;UBERON:0011216,2.46e-09,194;UBERON:0000483,2.76e-07,174;UBERON:0000119,4.94e-07,176 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0.33575854382378,0.700837921786577,0.129123323441576,0,0,0,0,0,0,0,0,0,0,0,0,1.78590909317247,0,0.261199789138935,0,0,0,0,0.215471232685889,0.380046838912748,0,0.221730510655305,0,0,15.8481681015439,0,0,0,0,0.7813353445238,0,0,0,0,1.00717454380462,1.4192770370732,0.734187008646726,2.34717403304412,0.872100625521786,1.97717564461025,2.13872888981712,1.1198913730029,2.87505128729943,0.167782606057736,0,0,1.02903774414379,2.29226751951005,1.54701627683233,0.606949382578793,1.5869729378161,1.26766280701236,0.677689064138264,0,0.899899717281399,1.97773272513395,0,1.79760066311043,1.53687322128622,0.103689612308478,0,0.210324961351382,5.14171771926846,3.3130281142742,0.367472397644862,0.0958454710182364,0.919218786610021,5.50579404996943,4.46905683298157,3.37934373163736,0.527545150920775,1.37231465403614,0,4.74611098302348,5.06486349028512,3.0559649555362,2.35702868378934,1.28134512719193,1.1183966749518,0.605809546665472,0.453429360640713,0.869593466105033,0,0,0.539703191637817,0,0.448026887097336,0.421333260395256,1.53387290320252,1.03914401841148,0.70667914902068,0.422530259330042,1.28326477414318,2.54805239706646,7.11066703153331,0.649473123033642,0.506719730950197,0.505524445014783,0.79928715803342,0,0.742210695324124,0.693941307064543,0.304465478312141,0,0.301445281105245,0.470354828542819,0.376999773989026,1.23597483867187,1.01219549843938,0,0.485300549842228,0.441683036920787,0,0,7.61230072230023,12.9856958224342,0,0,0,0,4.04434726393021,2.28750301409313,0.376963056338593,6.25767552692195,7.41574826257959,5.40248915854856,4.38051410282946,0.509196819251581,0.248813941220186,0.505445516867349,0.420883711772948,0.520481771850815,0.229902104433473,0.360124259610698,0.150704817835715,0.544291993210623,0.512454881139399,0.843315521037559,1.03481348295606,0,0,0,0.219195732427575,0.556094498451196,0.696504333044333,0.205782136407943,0.199034266818493,0,0,0,0.207125772535502,0.234526059981096,0,0,0.590292695242212,0.308534225774757,0.465067889500816,0,0.233530684734339,0.493679549740441,0,0.243206428637567,0,0.219550115291051,0.536825675041487,4.20579897128254,1.44066457330998,0,0.528901133327089,0.426576501070468,0.232236671860439,0.128867461322093,0,0,0.190225626112559,0.474529061544512,0,1.00534083520108,0.198956472041151,0.38992817423824,0,0,0.199141273254367,0.189667900953082,0.114248512609729,1.1270773567308,0,0.193952487167626,0.420814919341911,0.632365371242573,0.295220295959204,0.31399745568275,0.493588655687202,0.296452627087149,0,0.196558995113203,0,0,0.482354319504834,0.25462585178142,0.575392274901621,0,0.274561413188081,0,0,0,0.505157755894224,0,0.482443521363367,1.10851914099963,0.568474235311454,0.162964976442026,0.339490171550376,1.40814148973101,1.67506257441816,2.61848004974615,4.68320754858717,1.7339865851681,1.99318220683897,1.43509291791738,0.81931657357869,1.03610989119537,2.89298117163023,0,1.08781136763742,0,0.275936746304732,5.77982123956051,2.93029216480508,0.327869890753351,0.252470927204373,1.26203287766503,1.56175497718655,0.430846795465598,0.238968797952552,0.668396022247182,0.283076530788832,1.21443210502468,0.876767573733936,1.18586333383957,1.92792789853084,0.425820255624806,0.35613120733451,0.162886959353576,0.659880491890142,1.32745138339963,0.242780636154981,0.302323556964751,0.377210159511796,0.885905678642318,0.307435147943927,0.516856586336442,0.727067458955011,0.356497378384721,0.316036757935816,0,0,1.02131881726136,0.36012218806262,0.129358683782755,0.643011105094777,0.354680467284547,0.356737635204141,0.822745103010605,1.2178597964584,0.23467170806371,0.63549621259146,0.220528398054962,0.49465875882444,0.807322133479528,0.301564624640779,0.358117032009409,0.492422699235184,0,4.82105785227325,0.170870880797853,0,0.185194527369712,0.188368457004691,0,0,0,0,0,0,0,0,0.324016022465404,0,0.218362563746178,0.809186078308924,0.661227645802687,1.04702376793612,0.129614973291793,0,0,0.299033092087958,0.165458490457098,0.583353565032143,0.129159823477731,0,0.117357238645754,0,0.209718688851422,0.241584120826006,0.576060012515731,0,0,0.205421914329655,0,0,0,0,0.147689527174577,0,0.0762068066549998,0,0.0974578807397524,0.0962118416403295,0,0.680191150845634,0.221985953374065,0.0897138566094757,0.167884616364078,1.15913756419314,0.93841237725591,0.183151624267265,0.857473516316263,0.501572104035363,5.64751842617067,7.36520378411483,5.15605962095457,6.35856774671644,13.7016503954128,6.0431511791176,10.1253375034771,7.65546045481175,8.60970577069989,5.69536342927002,0.207574695168353,0,0.170733605754134,0.243106717068294,0.419226325255965,0.551530525350042,0,0,0.962757628775446,0,0.50695859978048,0.377252682772152,0.655490552289177,0.576226371643824,0.516919220600519,0,0.579421629724277,0,0.412085900803307,0.441596760403192,1.02860775715625,0.887379030796687,0.953744759789284,0.581385666529314,0.282328141245992,0.507687647350059,0.548783918618318,0.263069711437843,0.407412341537585,0,0.118635018124174,0.591026894253381,1.22769312950907,0.77468420592983,0.192906610981141,0.999242311751784,1.63752125911786,0.644613162144895,1.3390183244819,0,0 | |phase1_expression=0.160148847104794,0,0,0,0,0.33575854382378,0.700837921786577,0.129123323441576,0,0,0,0,0,0,0,0,0,0,0,0,1.78590909317247,0,0.261199789138935,0,0,0,0,0.215471232685889,0.380046838912748,0,0.221730510655305,0,0,15.8481681015439,0,0,0,0,0.7813353445238,0,0,0,0,1.00717454380462,1.4192770370732,0.734187008646726,2.34717403304412,0.872100625521786,1.97717564461025,2.13872888981712,1.1198913730029,2.87505128729943,0.167782606057736,0,0,1.02903774414379,2.29226751951005,1.54701627683233,0.606949382578793,1.5869729378161,1.26766280701236,0.677689064138264,0,0.899899717281399,1.97773272513395,0,1.79760066311043,1.53687322128622,0.103689612308478,0,0.210324961351382,5.14171771926846,3.3130281142742,0.367472397644862,0.0958454710182364,0.919218786610021,5.50579404996943,4.46905683298157,3.37934373163736,0.527545150920775,1.37231465403614,0,4.74611098302348,5.06486349028512,3.0559649555362,2.35702868378934,1.28134512719193,1.1183966749518,0.605809546665472,0.453429360640713,0.869593466105033,0,0,0.539703191637817,0,0.448026887097336,0.421333260395256,1.53387290320252,1.03914401841148,0.70667914902068,0.422530259330042,1.28326477414318,2.54805239706646,7.11066703153331,0.649473123033642,0.506719730950197,0.505524445014783,0.79928715803342,0,0.742210695324124,0.693941307064543,0.304465478312141,0,0.301445281105245,0.470354828542819,0.376999773989026,1.23597483867187,1.01219549843938,0,0.485300549842228,0.441683036920787,0,0,7.61230072230023,12.9856958224342,0,0,0,0,4.04434726393021,2.28750301409313,0.376963056338593,6.25767552692195,7.41574826257959,5.40248915854856,4.38051410282946,0.509196819251581,0.248813941220186,0.505445516867349,0.420883711772948,0.520481771850815,0.229902104433473,0.360124259610698,0.150704817835715,0.544291993210623,0.512454881139399,0.843315521037559,1.03481348295606,0,0,0,0.219195732427575,0.556094498451196,0.696504333044333,0.205782136407943,0.199034266818493,0,0,0,0.207125772535502,0.234526059981096,0,0,0.590292695242212,0.308534225774757,0.465067889500816,0,0.233530684734339,0.493679549740441,0,0.243206428637567,0,0.219550115291051,0.536825675041487,4.20579897128254,1.44066457330998,0,0.528901133327089,0.426576501070468,0.232236671860439,0.128867461322093,0,0,0.190225626112559,0.474529061544512,0,1.00534083520108,0.198956472041151,0.38992817423824,0,0,0.199141273254367,0.189667900953082,0.114248512609729,1.1270773567308,0,0.193952487167626,0.420814919341911,0.632365371242573,0.295220295959204,0.31399745568275,0.493588655687202,0.296452627087149,0,0.196558995113203,0,0,0.482354319504834,0.25462585178142,0.575392274901621,0,0.274561413188081,0,0,0,0.505157755894224,0,0.482443521363367,1.10851914099963,0.568474235311454,0.162964976442026,0.339490171550376,1.40814148973101,1.67506257441816,2.61848004974615,4.68320754858717,1.7339865851681,1.99318220683897,1.43509291791738,0.81931657357869,1.03610989119537,2.89298117163023,0,1.08781136763742,0,0.275936746304732,5.77982123956051,2.93029216480508,0.327869890753351,0.252470927204373,1.26203287766503,1.56175497718655,0.430846795465598,0.238968797952552,0.668396022247182,0.283076530788832,1.21443210502468,0.876767573733936,1.18586333383957,1.92792789853084,0.425820255624806,0.35613120733451,0.162886959353576,0.659880491890142,1.32745138339963,0.242780636154981,0.302323556964751,0.377210159511796,0.885905678642318,0.307435147943927,0.516856586336442,0.727067458955011,0.356497378384721,0.316036757935816,0,0,1.02131881726136,0.36012218806262,0.129358683782755,0.643011105094777,0.354680467284547,0.356737635204141,0.822745103010605,1.2178597964584,0.23467170806371,0.63549621259146,0.220528398054962,0.49465875882444,0.807322133479528,0.301564624640779,0.358117032009409,0.492422699235184,0,4.82105785227325,0.170870880797853,0,0.185194527369712,0.188368457004691,0,0,0,0,0,0,0,0,0.324016022465404,0,0.218362563746178,0.809186078308924,0.661227645802687,1.04702376793612,0.129614973291793,0,0,0.299033092087958,0.165458490457098,0.583353565032143,0.129159823477731,0,0.117357238645754,0,0.209718688851422,0.241584120826006,0.576060012515731,0,0,0.205421914329655,0,0,0,0,0.147689527174577,0,0.0762068066549998,0,0.0974578807397524,0.0962118416403295,0,0.680191150845634,0.221985953374065,0.0897138566094757,0.167884616364078,1.15913756419314,0.93841237725591,0.183151624267265,0.857473516316263,0.501572104035363,5.64751842617067,7.36520378411483,5.15605962095457,6.35856774671644,13.7016503954128,6.0431511791176,10.1253375034771,7.65546045481175,8.60970577069989,5.69536342927002,0.207574695168353,0,0.170733605754134,0.243106717068294,0.419226325255965,0.551530525350042,0,0,0.962757628775446,0,0.50695859978048,0.377252682772152,0.655490552289177,0.576226371643824,0.516919220600519,0,0.579421629724277,0,0.412085900803307,0.441596760403192,1.02860775715625,0.887379030796687,0.953744759789284,0.581385666529314,0.282328141245992,0.507687647350059,0.548783918618318,0.263069711437843,0.407412341537585,0,0.118635018124174,0.591026894253381,1.22769312950907,0.77468420592983,0.192906610981141,0.999242311751784,1.63752125911786,0.644613162144895,1.3390183244819,0,0 | ||
|short_description=p3@Trim3 | |short_description=p3@Trim3 | ||
}} | }} |
Latest revision as of 16:36, 25 September 2015
Short description: | p3@Trim3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Trim3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 7bp_to_ENSMUST00000147044_5end |
EntrezGene: | Trim3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 2.89e-09 | 43 |
ectodermal cell | 6.75e-09 | 44 |
neurectodermal cell | 6.75e-09 | 44 |
electrically responsive cell | 2.10e-08 | 39 |
electrically active cell | 2.10e-08 | 39 |
embryonic cell | 7.76e-08 | 70 |