FFCP PHASE1:Mm9::chr13:58009685..58009700,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20745 | |EntrezGene=20745 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |MCL_coexpression_id=1 | ||
|TSSclassifier=NA | |||
|UniProt=Q8BKQ3,Q8BM07,Q8BM19,B2RXY1,Q6DIC9 | |UniProt=Q8BKQ3,Q8BM07,Q8BM19,B2RXY1,Q6DIC9 | ||
|association_with_transcript=0bp_to_NM_001166463,NM_001166464,NM_001166465,NM_001166466,NM_009262,uc007qtc.2,uc007qtd.2,uc007qte.2,uc011zai.1,uc011zaj.1,uc011zak.1_5end | |association_with_transcript=0bp_to_NM_001166463,NM_001166464,NM_001166465,NM_001166466,NM_009262,uc007qtc.2,uc007qtd.2,uc007qte.2,uc011zai.1,uc011zaj.1,uc011zak.1_5end | ||
|cluster_id=chr13:58009685..58009700,- | |||
|description=CAGE_peak_1_at_Spock1_5end | |description=CAGE_peak_1_at_Spock1_5end | ||
|id=chr13:58009685..58009700,- | |id=chr13:58009685..58009700,- | ||
|ontology_enrichment_celltype=CL:0000540!1.97e-16!33;CL:0000047!1.97e-16!33;CL:0000031!1.97e-16!33;CL:0000404!1.97e-16!33;CL:0000221!2.23e-13!44;CL:0000133!2.23e-13!44;CL:0000117!3.82e-13!23;CL:0000337!3.82e-13!23;CL:0002319!1.02e-12!43;CL:0000393!1.51e-10!39;CL:0000211!1.51e-10!39;CL:0000055!6.67e-08!50 | |ontology_enrichment_celltype=CL:0000540!1.97e-16!33;CL:0000047!1.97e-16!33;CL:0000031!1.97e-16!33;CL:0000404!1.97e-16!33;CL:0000221!2.23e-13!44;CL:0000133!2.23e-13!44;CL:0000117!3.82e-13!23;CL:0000337!3.82e-13!23;CL:0002319!1.02e-12!43;CL:0000393!1.51e-10!39;CL:0000211!1.51e-10!39;CL:0000055!6.67e-08!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.84e-18,33;CL:0000047,1.84e-18,33;CL:0000031,1.84e-18,33;CL:0000404,1.84e-18,33;CL:0000117,1.01e-14,23;CL:0000337,1.01e-14,23;CL:0000221,7.49e-14,44;CL:0000133,7.49e-14,44;CL:0002319,4.03e-13,43;CL:0000393,4.04e-13,39;CL:0000211,4.04e-13,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!6.07e-31!102;UBERON:0000924!6.07e-31!102;UBERON:0006601!6.07e-31!102;UBERON:0000073!3.70e-29!75;UBERON:0001016!3.70e-29!75;UBERON:0002346!1.01e-28!71;UBERON:0003075!1.01e-28!71;UBERON:0007284!1.01e-28!71;UBERON:0001017!3.02e-28!73;UBERON:0005743!3.02e-28!73;UBERON:0000033!4.49e-23!63;UBERON:0001049!6.56e-22!52;UBERON:0005068!6.56e-22!52;UBERON:0006241!6.56e-22!52;UBERON:0007135!6.56e-22!52;UBERON:0000955!1.93e-20!50;UBERON:0006238!1.93e-20!50;UBERON:0002616!6.46e-20!49;UBERON:0003056!5.51e-19!49;UBERON:0002020!6.18e-17!34;UBERON:0003080!3.38e-16!40;UBERON:0002780!1.27e-15!39;UBERON:0001890!1.27e-15!39;UBERON:0006240!1.27e-15!39;UBERON:0007811!6.05e-14!86;UBERON:0000153!8.60e-14!94;UBERON:0002791!8.83e-14!29;UBERON:0003528!8.83e-14!29;UBERON:0001893!8.83e-14!29;UBERON:0000956!1.22e-09!21;UBERON:0001869!1.22e-09!21;UBERON:0000203!1.22e-09!21;UBERON:0002619!1.05e-07!17;UBERON:0002021!1.41e-07!10;UBERON:0000411!1.41e-07!10;UBERON:0001950!1.41e-07!10;UBERON:0000468!3.28e-07!333 | |ontology_enrichment_uberon=UBERON:0004121!6.07e-31!102;UBERON:0000924!6.07e-31!102;UBERON:0006601!6.07e-31!102;UBERON:0000073!3.70e-29!75;UBERON:0001016!3.70e-29!75;UBERON:0002346!1.01e-28!71;UBERON:0003075!1.01e-28!71;UBERON:0007284!1.01e-28!71;UBERON:0001017!3.02e-28!73;UBERON:0005743!3.02e-28!73;UBERON:0000033!4.49e-23!63;UBERON:0001049!6.56e-22!52;UBERON:0005068!6.56e-22!52;UBERON:0006241!6.56e-22!52;UBERON:0007135!6.56e-22!52;UBERON:0000955!1.93e-20!50;UBERON:0006238!1.93e-20!50;UBERON:0002616!6.46e-20!49;UBERON:0003056!5.51e-19!49;UBERON:0002020!6.18e-17!34;UBERON:0003080!3.38e-16!40;UBERON:0002780!1.27e-15!39;UBERON:0001890!1.27e-15!39;UBERON:0006240!1.27e-15!39;UBERON:0007811!6.05e-14!86;UBERON:0000153!8.60e-14!94;UBERON:0002791!8.83e-14!29;UBERON:0003528!8.83e-14!29;UBERON:0001893!8.83e-14!29;UBERON:0000956!1.22e-09!21;UBERON:0001869!1.22e-09!21;UBERON:0000203!1.22e-09!21;UBERON:0002619!1.05e-07!17;UBERON:0002021!1.41e-07!10;UBERON:0000411!1.41e-07!10;UBERON:0001950!1.41e-07!10;UBERON:0000468!3.28e-07!333 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.57e-31,75;UBERON:0001017,1.67e-30,73;UBERON:0004121,7.71e-30,95;UBERON:0000924,7.71e-30,95;UBERON:0006601,7.71e-30,95;UBERON:0002346,6.57e-29,64;UBERON:0003075,6.57e-29,64;UBERON:0007284,6.57e-29,64;UBERON:0010371,7.36e-26,73;UBERON:0000073,3.11e-25,54;UBERON:0001049,1.00e-23,52;UBERON:0005068,1.00e-23,52;UBERON:0006241,1.00e-23,52;UBERON:0007135,1.00e-23,52;UBERON:0003056,2.55e-21,49;UBERON:0000955,8.49e-20,47;UBERON:0006238,8.49e-20,47;UBERON:0010314,2.02e-19,92;UBERON:0002616,3.21e-19,46;UBERON:0002020,5.53e-19,34;UBERON:0003080,3.78e-18,40;UBERON:0002780,1.70e-17,39;UBERON:0001890,1.70e-17,39;UBERON:0006240,1.70e-17,39;UBERON:0003528,2.13e-15,29;UBERON:0002791,2.13e-15,29;UBERON:0001893,2.13e-15,29;UBERON:0000956,1.07e-10,21;UBERON:0001869,1.07e-10,21;UBERON:0000203,1.07e-10,21;UBERON:0002619,1.68e-08,17;UBERON:0002021,2.12e-08,10;UBERON:0000411,2.12e-08,10;UBERON:0001950,2.12e-08,10 | |||
|phase1_expression=61.9776038295553,2.09385244583617,3.18499467572675,0,0,0.503637815735669,0.934450562382103,0,0,0,0,0.0797721589953364,0.171200729931206,0,0,0,0,0,0,0,21.4309091180696,0,0,0.319984845586813,0,1.14846392823004,0.430761996159075,0.861884930743556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0.436050312760893,0,0.388859798148567,0.279972843250725,0,0,0,0,0,0,0,71.6200271442976,69.2978182846363,76.6935998242477,0,0,0,0.988866362566974,0.7104801149461,0.599200221036809,1.53687322128622,27.5814368740551,34.8315320895762,38.0688180046001,147.96720992117,161.675771976581,21.313399063402,16.6771119571731,29.4150011715207,142.049486489211,170.207221667555,156.2178443216,77.2853646098936,71.1773867226747,70.3233050251626,137.916401506682,81.6005784545936,98.8604663115961,159.983321912202,138.10053037513,117.245251424114,21.0518817466252,17.4570303846675,0,0,0,0.539703191637817,0,0,6.17955448579708,0,0,0,241.123934657677,0,0,0,0,0,0,3.31133251185274,0.258937883647172,13.8051189330287,15.26670875542,16.7456013071678,17.0655467969483,13.7157602902887,17.52071736322,4.02133092254962,0.494389935468748,0.289198713839823,0,0.647067399789637,0.662524555381181,0.484875253135222,0,151.36767205497,123.154663606312,0,0,0,0,131.06680947922,134.962677831495,38.5758860986494,175.041090433622,156.497859886162,161.243522578219,135.958178450781,0.916554274652847,3.23458123586242,21.2287117084287,7.36546495602659,8.32770834961304,23.9098188610812,32.0510591053522,30.8944876563216,24.6292126927807,14.2206229516183,12.4623293664439,16.557015727297,0.646703978798527,1.70195472151037,1.75951124163949,1.97276159184817,4.44875598760957,1.74126083261083,2.05782136407943,1.19420560091096,0,0,0,0.207125772535502,0.938104239924385,0,0.23674473558521,0.787056926989615,0.308534225774757,0.232533944750408,0.536546802799238,0.467061369468678,0.329119699826961,0.164167464079095,0.0810688095458557,0,0,0,138.160496206632,41.0589403393345,0,0,3.62590025909898,6.0381534683714,2.57734922644187,1.21010114774006,1.77902435075896,2.28270751335071,0.474529061544512,1.4822905925161,1.75934646160189,0.795825888164603,1.16978452271472,0,0.432276099749388,0,0.948339504765408,2.85621281524322,0,0.203651327845314,0.193952487167626,0.701358198903186,0.0632365371242573,0,0,0.246794327843601,0,0.333690211432188,0.393117990226406,0,0,0,0.25462585178142,0.287696137450811,0.162135226775035,0.274561413188081,0,0,0,0,0,0,0,1.51593129416388,0.162964976442026,0,0.234690248288502,0.502518772325447,1.19021820443007,0.975668239288994,0.157635144106191,0.221464689648775,0.318909537314974,0,0,0.289298117163023,0,0,0,0,173.07353600684,142.763834269303,0,0.252470927204373,26.8181986503818,30.8446607994344,45.2389135238878,8.60287672629187,22.2798674082394,29.4399592020386,9.31064613852257,13.7360253218317,22.1361155650053,45.3063056154748,1.27746076687442,1.78065603667255,1.46598263418218,1.97964147567043,0,0.971122544619926,1.209294227859,1.32023555829129,3.83892460745005,2.45948118355142,2.84271122485043,3.99887102425256,2.13898427030833,0.316036757935816,1.05418608574999,0,5.7874732978144,5.40183282093931,3.88076051348264,7.28745919107414,5.67488747655275,9.27517851530767,13.4930196893739,13.0919928119278,1.64270195644597,1.69465656691056,5.51320995137405,0.32977250588296,0.968786560175433,1.5078231232039,1.3130957840345,0.328281799490123,0,191.729762278867,0,0.412773735926445,0,0.188368457004691,0,0,0.169978429993855,0,0,0,4.58687190692646,5.48962561242491,3.02414954301044,3.97267762427491,1.74690050996942,2.29269388854195,1.98368293740806,0.785267825952089,0.90730481304255,0,0,0.299033092087958,0.496375471371293,0.388902376688095,0.516639293910924,0,0.234714477291508,0.39061315453185,1.04859344425711,0,0,0.948033361884535,0.608175645870493,1.54066435747241,0.909445760844565,0.716106782669926,0.993406773906324,1.20195449519969,0.443068581523732,0.504832249740738,1.447929326445,0.504130925684203,0.38983152295901,0.962118416403295,0.701261413089414,0.226730383615211,0,0.179427713218951,0.335769232728157,2.89784391048286,0.563047426353546,2.56412273974171,0.214368379079066,5.01572104035363,152.482997506608,154.669279466411,153.535997601758,114.454219440896,159.62422710656,157.877324554447,149.854995051461,121.58672487054,154.974703872598,168.272101319341,2.28332164685189,15.9609949360412,15.7074917293803,11.9122291363464,12.367176595051,12.1336715577009,14.446037307105,15.658664350156,17.0087181083662,12.1294661646623,16.9831130926461,14.9014809695,12.4543204934944,14.213583833881,14.1291253630809,14.7651044297753,12.9790445058238,15.2398284166327,16.8955219329356,15.7502844543805,14.4005086001874,14.198064492747,13.1139904471027,13.0811774969096,14.2105164427149,13.6229518705599,12.4391021553485,7.3659519202596,12.765586701511,16.2731258780744,15.7784574105152,14.677167873959,22.5077073743329,13.634442024365,12.5389297137742,36.2225338010022,11.6965804222704,15.4707158914775,10.5208582637864,6.17655973534643,7.18790290423307 | |phase1_expression=61.9776038295553,2.09385244583617,3.18499467572675,0,0,0.503637815735669,0.934450562382103,0,0,0,0,0.0797721589953364,0.171200729931206,0,0,0,0,0,0,0,21.4309091180696,0,0,0.319984845586813,0,1.14846392823004,0.430761996159075,0.861884930743556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0.436050312760893,0,0.388859798148567,0.279972843250725,0,0,0,0,0,0,0,71.6200271442976,69.2978182846363,76.6935998242477,0,0,0,0.988866362566974,0.7104801149461,0.599200221036809,1.53687322128622,27.5814368740551,34.8315320895762,38.0688180046001,147.96720992117,161.675771976581,21.313399063402,16.6771119571731,29.4150011715207,142.049486489211,170.207221667555,156.2178443216,77.2853646098936,71.1773867226747,70.3233050251626,137.916401506682,81.6005784545936,98.8604663115961,159.983321912202,138.10053037513,117.245251424114,21.0518817466252,17.4570303846675,0,0,0,0.539703191637817,0,0,6.17955448579708,0,0,0,241.123934657677,0,0,0,0,0,0,3.31133251185274,0.258937883647172,13.8051189330287,15.26670875542,16.7456013071678,17.0655467969483,13.7157602902887,17.52071736322,4.02133092254962,0.494389935468748,0.289198713839823,0,0.647067399789637,0.662524555381181,0.484875253135222,0,151.36767205497,123.154663606312,0,0,0,0,131.06680947922,134.962677831495,38.5758860986494,175.041090433622,156.497859886162,161.243522578219,135.958178450781,0.916554274652847,3.23458123586242,21.2287117084287,7.36546495602659,8.32770834961304,23.9098188610812,32.0510591053522,30.8944876563216,24.6292126927807,14.2206229516183,12.4623293664439,16.557015727297,0.646703978798527,1.70195472151037,1.75951124163949,1.97276159184817,4.44875598760957,1.74126083261083,2.05782136407943,1.19420560091096,0,0,0,0.207125772535502,0.938104239924385,0,0.23674473558521,0.787056926989615,0.308534225774757,0.232533944750408,0.536546802799238,0.467061369468678,0.329119699826961,0.164167464079095,0.0810688095458557,0,0,0,138.160496206632,41.0589403393345,0,0,3.62590025909898,6.0381534683714,2.57734922644187,1.21010114774006,1.77902435075896,2.28270751335071,0.474529061544512,1.4822905925161,1.75934646160189,0.795825888164603,1.16978452271472,0,0.432276099749388,0,0.948339504765408,2.85621281524322,0,0.203651327845314,0.193952487167626,0.701358198903186,0.0632365371242573,0,0,0.246794327843601,0,0.333690211432188,0.393117990226406,0,0,0,0.25462585178142,0.287696137450811,0.162135226775035,0.274561413188081,0,0,0,0,0,0,0,1.51593129416388,0.162964976442026,0,0.234690248288502,0.502518772325447,1.19021820443007,0.975668239288994,0.157635144106191,0.221464689648775,0.318909537314974,0,0,0.289298117163023,0,0,0,0,173.07353600684,142.763834269303,0,0.252470927204373,26.8181986503818,30.8446607994344,45.2389135238878,8.60287672629187,22.2798674082394,29.4399592020386,9.31064613852257,13.7360253218317,22.1361155650053,45.3063056154748,1.27746076687442,1.78065603667255,1.46598263418218,1.97964147567043,0,0.971122544619926,1.209294227859,1.32023555829129,3.83892460745005,2.45948118355142,2.84271122485043,3.99887102425256,2.13898427030833,0.316036757935816,1.05418608574999,0,5.7874732978144,5.40183282093931,3.88076051348264,7.28745919107414,5.67488747655275,9.27517851530767,13.4930196893739,13.0919928119278,1.64270195644597,1.69465656691056,5.51320995137405,0.32977250588296,0.968786560175433,1.5078231232039,1.3130957840345,0.328281799490123,0,191.729762278867,0,0.412773735926445,0,0.188368457004691,0,0,0.169978429993855,0,0,0,4.58687190692646,5.48962561242491,3.02414954301044,3.97267762427491,1.74690050996942,2.29269388854195,1.98368293740806,0.785267825952089,0.90730481304255,0,0,0.299033092087958,0.496375471371293,0.388902376688095,0.516639293910924,0,0.234714477291508,0.39061315453185,1.04859344425711,0,0,0.948033361884535,0.608175645870493,1.54066435747241,0.909445760844565,0.716106782669926,0.993406773906324,1.20195449519969,0.443068581523732,0.504832249740738,1.447929326445,0.504130925684203,0.38983152295901,0.962118416403295,0.701261413089414,0.226730383615211,0,0.179427713218951,0.335769232728157,2.89784391048286,0.563047426353546,2.56412273974171,0.214368379079066,5.01572104035363,152.482997506608,154.669279466411,153.535997601758,114.454219440896,159.62422710656,157.877324554447,149.854995051461,121.58672487054,154.974703872598,168.272101319341,2.28332164685189,15.9609949360412,15.7074917293803,11.9122291363464,12.367176595051,12.1336715577009,14.446037307105,15.658664350156,17.0087181083662,12.1294661646623,16.9831130926461,14.9014809695,12.4543204934944,14.213583833881,14.1291253630809,14.7651044297753,12.9790445058238,15.2398284166327,16.8955219329356,15.7502844543805,14.4005086001874,14.198064492747,13.1139904471027,13.0811774969096,14.2105164427149,13.6229518705599,12.4391021553485,7.3659519202596,12.765586701511,16.2731258780744,15.7784574105152,14.677167873959,22.5077073743329,13.634442024365,12.5389297137742,36.2225338010022,11.6965804222704,15.4707158914775,10.5208582637864,6.17655973534643,7.18790290423307 | ||
|short_description=p1@Spock1 | |short_description=p1@Spock1 | ||
}} | }} |
Latest revision as of 19:29, 1 October 2015
Short description: | p1@Spock1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Spock1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_NM_001166463, NM_001166464, NM_001166465, NM_001166466, NM_009262, uc007qtc.2, uc007qtd.2, uc007qte.2, uc011zai.1, uc011zaj.1, uc011zak.1_5end |
EntrezGene: | Spock1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.84e-18 | 33 |
neuronal stem cell | 1.84e-18 | 33 |
neuroblast | 1.84e-18 | 33 |
electrically signaling cell | 1.84e-18 | 33 |
CNS neuron (sensu Vertebrata) | 1.01e-14 | 23 |
neuroblast (sensu Vertebrata) | 1.01e-14 | 23 |
ectodermal cell | 7.49e-14 | 44 |
neurectodermal cell | 7.49e-14 | 44 |
neural cell | 4.03e-13 | 43 |
electrically responsive cell | 4.04e-13 | 39 |
electrically active cell | 4.04e-13 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.57e-31 | 75 |
central nervous system | 1.67e-30 | 73 |
ectoderm-derived structure | 7.71e-30 | 95 |
ectoderm | 7.71e-30 | 95 |
presumptive ectoderm | 7.71e-30 | 95 |
neurectoderm | 6.57e-29 | 64 |
neural plate | 6.57e-29 | 64 |
presumptive neural plate | 6.57e-29 | 64 |
ecto-epithelium | 7.36e-26 | 73 |
regional part of nervous system | 3.11e-25 | 54 |
neural tube | 1.00e-23 | 52 |
neural rod | 1.00e-23 | 52 |
future spinal cord | 1.00e-23 | 52 |
neural keel | 1.00e-23 | 52 |
pre-chordal neural plate | 2.55e-21 | 49 |
brain | 8.49e-20 | 47 |
future brain | 8.49e-20 | 47 |
structure with developmental contribution from neural crest | 2.02e-19 | 92 |
regional part of brain | 3.21e-19 | 46 |
gray matter | 5.53e-19 | 34 |
anterior neural tube | 3.78e-18 | 40 |
regional part of forebrain | 1.70e-17 | 39 |
forebrain | 1.70e-17 | 39 |
future forebrain | 1.70e-17 | 39 |
brain grey matter | 2.13e-15 | 29 |
regional part of telencephalon | 2.13e-15 | 29 |
telencephalon | 2.13e-15 | 29 |
cerebral cortex | 1.07e-10 | 21 |
cerebral hemisphere | 1.07e-10 | 21 |
pallium | 1.07e-10 | 21 |
regional part of cerebral cortex | 1.68e-08 | 17 |
occipital lobe | 2.12e-08 | 10 |
visual cortex | 2.12e-08 | 10 |
neocortex | 2.12e-08 | 10 |