FFCP PHASE1:Mm9::chr1:129999874..129999888,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=226412 | |EntrezGene=226412 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=0 | |MCL_coexpression_id=0 | ||
|TSSclassifier=NA | |||
|UniProt=E9Q9Q2,Q80ZH9,B9EHE8 | |UniProt=E9Q9Q2,Q80ZH9,B9EHE8 | ||
|association_with_transcript=0bp_to_ENSMUST00000036288,NM_181750,uc007clh.1,uc007cli.1,uc007clj.1_5end | |association_with_transcript=0bp_to_ENSMUST00000036288,NM_181750,uc007clh.1,uc007cli.1,uc007clj.1_5end | ||
|cluster_id=chr1:129999874..129999888,+ | |||
|description=CAGE_peak_3_at_R3hdm1_5end | |description=CAGE_peak_3_at_R3hdm1_5end | ||
|id=chr1:129999874..129999888,+ | |id=chr1:129999874..129999888,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,9.46e-07,23;CL:0000337,9.46e-07,23 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!9.72e-12!63;UBERON:0000955!2.06e-11!50;UBERON:0006238!2.06e-11!50;UBERON:0002020!2.71e-11!34;UBERON:0003056!3.56e-11!49;UBERON:0002616!6.57e-11!49;UBERON:0001049!7.62e-11!52;UBERON:0005068!7.62e-11!52;UBERON:0006241!7.62e-11!52;UBERON:0007135!7.62e-11!52;UBERON:0003080!1.71e-10!40;UBERON:0000153!2.00e-10!94;UBERON:0007811!3.63e-10!86;UBERON:0002780!4.91e-10!39;UBERON:0001890!4.91e-10!39;UBERON:0006240!4.91e-10!39;UBERON:0002791!7.81e-10!29;UBERON:0003528!7.81e-10!29;UBERON:0001893!7.81e-10!29;UBERON:0000073!1.02e-09!75;UBERON:0001016!1.02e-09!75;UBERON:0002346!1.08e-09!71;UBERON:0003075!1.08e-09!71;UBERON:0007284!1.08e-09!71;UBERON:0004121!1.50e-09!102;UBERON:0000924!1.50e-09!102;UBERON:0006601!1.50e-09!102;UBERON:0001017!1.70e-09!73;UBERON:0005743!1.70e-09!73;UBERON:0002021!5.30e-07!10;UBERON:0000411!5.30e-07!10;UBERON:0001950!5.30e-07!10;UBERON:0000956!6.04e-07!21;UBERON:0001869!6.04e-07!21;UBERON:0000203!6.04e-07!21 | |ontology_enrichment_uberon=UBERON:0000033!9.72e-12!63;UBERON:0000955!2.06e-11!50;UBERON:0006238!2.06e-11!50;UBERON:0002020!2.71e-11!34;UBERON:0003056!3.56e-11!49;UBERON:0002616!6.57e-11!49;UBERON:0001049!7.62e-11!52;UBERON:0005068!7.62e-11!52;UBERON:0006241!7.62e-11!52;UBERON:0007135!7.62e-11!52;UBERON:0003080!1.71e-10!40;UBERON:0000153!2.00e-10!94;UBERON:0007811!3.63e-10!86;UBERON:0002780!4.91e-10!39;UBERON:0001890!4.91e-10!39;UBERON:0006240!4.91e-10!39;UBERON:0002791!7.81e-10!29;UBERON:0003528!7.81e-10!29;UBERON:0001893!7.81e-10!29;UBERON:0000073!1.02e-09!75;UBERON:0001016!1.02e-09!75;UBERON:0002346!1.08e-09!71;UBERON:0003075!1.08e-09!71;UBERON:0007284!1.08e-09!71;UBERON:0004121!1.50e-09!102;UBERON:0000924!1.50e-09!102;UBERON:0006601!1.50e-09!102;UBERON:0001017!1.70e-09!73;UBERON:0005743!1.70e-09!73;UBERON:0002021!5.30e-07!10;UBERON:0000411!5.30e-07!10;UBERON:0001950!5.30e-07!10;UBERON:0000956!6.04e-07!21;UBERON:0001869!6.04e-07!21;UBERON:0000203!6.04e-07!21 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.58e-13,54;UBERON:0002020,8.03e-12,34;UBERON:0003056,1.51e-11,49;UBERON:0001049,1.62e-11,52;UBERON:0005068,1.62e-11,52;UBERON:0006241,1.62e-11,52;UBERON:0007135,1.62e-11,52;UBERON:0002346,5.15e-11,64;UBERON:0003075,5.15e-11,64;UBERON:0007284,5.15e-11,64;UBERON:0003080,5.29e-11,40;UBERON:0004121,8.16e-11,95;UBERON:0000924,8.16e-11,95;UBERON:0006601,8.16e-11,95;UBERON:0000955,1.07e-10,47;UBERON:0006238,1.07e-10,47;UBERON:0002780,1.59e-10,39;UBERON:0001890,1.59e-10,39;UBERON:0006240,1.59e-10,39;UBERON:0010371,1.63e-10,73;UBERON:0003528,2.60e-10,29;UBERON:0002791,2.60e-10,29;UBERON:0001893,2.60e-10,29;UBERON:0001016,2.60e-10,75;UBERON:0002616,3.44e-10,46;UBERON:0001017,4.41e-10,73;UBERON:0010314,2.60e-08,92;UBERON:0000956,2.56e-07,21;UBERON:0001869,2.56e-07,21;UBERON:0000203,2.56e-07,21;UBERON:0002021,3.48e-07,10;UBERON:0000411,3.48e-07,10;UBERON:0001950,3.48e-07,10 | |||
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| |phase1_expression=1.92178616525753,0.348975407639361,1.36499771816861,0.60492842261366,0.500895729946347,1.17515490338323,0.467225281191051,0.516493293766305,0.281577444303333,0.234064526321993,1.88339765048055,0.957265907944037,1.19840510951844,0.786783621770977,1.33243904726265,1.61980213911861,2.09868563438444,1.26184866143295,0.548457734422955,1.27316895539409,10.2902381082794,0.893618560807968,1.04479915655574,0.639969691173627,0.45881856213434,0,0.430761996159075,0,0.760093677825496,0.504060259519861,0,1.27006134691926,0,0,1.73310971850765,0.831173226792462,0.612508068787107,0.837063261473815,0,0,0.588231488031014,0,0,0.755380907853464,1.11514624341466,1.10128051297009,0,0.65407546914134,0.659058548203415,1.36100929351998,0.699932108126813,0,0.167782606057736,1.45072428402269,0,0.771778308107841,1.71920063963254,0,2.02316460859598,1.5869729378161,1.26766280701236,0.677689064138264,0.889294796111139,1.3498495759221,0.988866362566974,0,1.19840044207362,1.92109152660777,4.14758449233911,1.75507719831198,2.10324961351382,2.57085885963423,1.98781686856452,2.57230678351403,2.01275489138296,0,2.20231761998777,4.97980618532232,4.14737639791857,2.2420668914133,1.9212405156506,4.68822033501084,2.79182999001381,2.25105044012672,3.66715794664344,2.35702868378934,2.84743361598206,1.86399445825301,1.51452386666368,2.11600368298999,2.02905142091174,1.72084775396277,2.03991400112325,0.539703191637817,0.649776417447669,0.448026887097336,1.40444420131752,2.21559419351475,1.03914401841148,0.70667914902068,1.69012103732017,3.84979432242953,2.54805239706646,7.11066703153331,0.216491041011214,0.253359865475099,0,2.2836775943812,2.84831672011889,1.7813056687779,1.38788261412909,0,1.61430848079241,2.11011696773672,0.823120949949934,1.38233250462643,2.47194967734374,2.74738778147832,0.884610551949874,2.10296904931632,2.42925670306433,1.45462575940567,0,1.46390398505774,4.60782754989601,0.766371165625774,0.958520996047362,0,0.889491589511453,2.84602214869163,1.83000241127451,4.77486538028885,3.82413504423008,5.37002460393694,2.49345653471472,2.75810147215188,1.01839363850316,1.36847667671102,0.505445516867349,0.841767423545896,1.56144531555244,1.14951052216736,1.62055916824814,2.71268672104287,2.31324097114515,1.7935920839879,3.18585863503078,2.32833033665114,1.5089759505299,2.08016688184601,2.28736461413134,1.7535658594206,0.834141747676794,1.39300866608867,0.823128545631774,1.79130840136644,0.702213187313235,0.51469581422943,0.568326998791185,1.65700618028402,0.938104239924385,0.900310307305074,2.13070262026689,0.787056926989615,1.07986979021165,0.930135779001631,1.07309360559848,1.5179494507732,2.30383789878873,0.985004784474571,2.51313309592153,2.04679982395465,1.3173006917463,2.54992195644706,3.57492912559016,2.16099685996497,0.330418782983798,0.528901133327089,1.49301775374664,2.78684006232526,1.54640953586512,2.21851877085677,1.33426826306922,0.190225626112559,0.474529061544512,0.494096864172033,0.502670417600539,1.1937388322469,1.16978452271472,0,0.648414149624083,0.199141273254367,0.758671603812327,1.02823661348756,2.25415471346161,0.814605311381257,0.193952487167626,1.05203729835478,1.26473074248515,2.21415221969403,0.941992367048249,0.863780147452604,0.296452627087149,2.8363667971736,2.16214894624523,2.9232074610031,1.01430060694251,1.20588579876208,0.50925170356284,0.287696137450811,1.45921704097532,1.64736847912849,0,1.11642284300551,1.87222603868736,0.757736633841335,0.717589654087649,0.964887042726734,1.29327233116623,0.947457058852424,1.30371981153621,1.01847051465113,1.87752198630802,1.17254380209271,2.61848004974615,0.780534591431195,0.945810864637146,1.10732344824387,2.39182152986231,0.81931657357869,2.07221978239075,1.88043776155965,0,1.08781136763742,0.491764273019036,1.37968373152366,1.44495530989013,2.22702204525186,1.3114795630134,3.53459298086122,1.57754109708128,0.780877488593277,0.646270193198397,1.19484398976276,1.11399337041197,1.98153571552183,1.21443210502468,1.16902343164525,1.18586333383957,3.53453448063988,1.84522110770749,0.890328018336276,1.95464351224291,1.64970122972535,2.65490276679926,1.21390318077491,1.209294227859,0.943025398779491,1.18120757152309,1.53717573971964,1.55056975900933,1.81766864738753,2.13898427030833,2.84433082142234,3.16255825724996,0,2.04263763452273,1.44048875225048,0.517434735131018,1.28602221018955,2.6601035046341,1.42695054081656,2.46823530903181,1.522324745573,0.938686832254841,0.42366414172764,1.10264199027481,1.97863503529776,1.13025098687134,2.11095237248546,1.07435109602823,1.64140899745061,0.874442509889552,1.29797711407357,1.19609616558497,1.857481811669,1.11116716421827,2.26042148405629,2.59719032669948,1.37266903923914,1.18984900995699,1.11961161858926,1.24379976423981,0.954670618015114,1.73984796469624,1.21991680276109,1.51207477150522,1.25452977608681,1.09181281873089,1.21377911746339,0.909188012978695,1.30877970992015,0.777689839750757,0,32.1304975049988,1.19613236835183,0.992750942742586,1.75006069509643,1.16243841129958,1.85851738039856,1.64300134104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| ||
|short_description=p3@R3hdm1 | |short_description=p3@R3hdm1 | ||
}} | }} |
Latest revision as of 07:29, 26 September 2015
Short description: | p3@R3hdm1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_R3hdm1_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | 0bp_to_ENSMUST00000036288, NM_181750, uc007clh.1, uc007cli.1, uc007clj.1_5end |
EntrezGene: | R3hdm1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 9.46e-07 | 23 |
neuroblast (sensu Vertebrata) | 9.46e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 3.58e-13 | 54 |
gray matter | 8.03e-12 | 34 |
pre-chordal neural plate | 1.51e-11 | 49 |
neural tube | 1.62e-11 | 52 |
neural rod | 1.62e-11 | 52 |
future spinal cord | 1.62e-11 | 52 |
neural keel | 1.62e-11 | 52 |
neurectoderm | 5.15e-11 | 64 |
neural plate | 5.15e-11 | 64 |
presumptive neural plate | 5.15e-11 | 64 |
anterior neural tube | 5.29e-11 | 40 |
ectoderm-derived structure | 8.16e-11 | 95 |
ectoderm | 8.16e-11 | 95 |
presumptive ectoderm | 8.16e-11 | 95 |
brain | 1.07e-10 | 47 |
future brain | 1.07e-10 | 47 |
regional part of forebrain | 1.59e-10 | 39 |
forebrain | 1.59e-10 | 39 |
future forebrain | 1.59e-10 | 39 |
ecto-epithelium | 1.63e-10 | 73 |
brain grey matter | 2.60e-10 | 29 |
regional part of telencephalon | 2.60e-10 | 29 |
telencephalon | 2.60e-10 | 29 |
nervous system | 2.60e-10 | 75 |
regional part of brain | 3.44e-10 | 46 |
central nervous system | 4.41e-10 | 73 |
structure with developmental contribution from neural crest | 2.60e-08 | 92 |
cerebral cortex | 2.56e-07 | 21 |
cerebral hemisphere | 2.56e-07 | 21 |
pallium | 2.56e-07 | 21 |
occipital lobe | 3.48e-07 | 10 |
visual cortex | 3.48e-07 | 10 |
neocortex | 3.48e-07 | 10 |