FFCP PHASE1:Mm9::chr16:38800306..38800322,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=22268 | |EntrezGene=22268 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=95 | |MCL_coexpression_id=95 | ||
|TSSclassifier=NA | |||
|UniProt=Q9Z2C6 | |UniProt=Q9Z2C6 | ||
|association_with_transcript=0bp_to_ENSMUST00000057767,NM_178924,uc007zfm.2_5end | |association_with_transcript=0bp_to_ENSMUST00000057767,NM_178924,uc007zfm.2_5end | ||
|cluster_id=chr16:38800306..38800322,- | |||
|description=CAGE_peak_1_at_Upk1b_5end | |description=CAGE_peak_1_at_Upk1b_5end | ||
|id=chr16:38800306..38800322,- | |id=chr16:38800306..38800322,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000464!2.98e-14!57;UBERON:0000466!1.44e-10!79;UBERON:0005177!2.97e-10!85;UBERON:0005178!6.82e-10!17;UBERON:0005181!6.82e-10!17;UBERON:0002224!6.82e-10!17;UBERON:0000915!6.82e-10!17;UBERON:0008947!6.82e-10!17;UBERON:0003258!6.82e-10!17;UBERON:0000926!2.76e-09!193;UBERON:0004120!2.76e-09!193;UBERON:0006603!2.76e-09!193;UBERON:0002100!9.79e-09!98;UBERON:0001048!1.17e-08!147;UBERON:0009569!1.25e-08!66;UBERON:0003103!2.56e-08!43;UBERON:0002048!7.28e-08!14;UBERON:0000117!7.28e-08!14;UBERON:0000171!7.28e-08!14;UBERON:0000170!7.28e-08!14;UBERON:0005597!7.28e-08!14;UBERON:0000118!7.28e-08!14;UBERON:0003886!1.56e-07!38;UBERON:0007100!3.29e-07!18;UBERON:0000948!3.29e-07!18;UBERON:0005498!3.29e-07!18;UBERON:0004140!3.29e-07!18;UBERON:0009881!3.29e-07!18;UBERON:0004141!3.29e-07!18;UBERON:0003084!3.29e-07!18;UBERON:0007005!3.29e-07!18;UBERON:0004139!3.29e-07!18;UBERON:0004291!3.29e-07!18;UBERON:0002323!4.71e-07!37;UBERON:0004458!4.71e-07!37;UBERON:0002553!6.64e-07!39 | |ontology_enrichment_uberon=UBERON:0000464!2.98e-14!57;UBERON:0000466!1.44e-10!79;UBERON:0005177!2.97e-10!85;UBERON:0005178!6.82e-10!17;UBERON:0005181!6.82e-10!17;UBERON:0002224!6.82e-10!17;UBERON:0000915!6.82e-10!17;UBERON:0008947!6.82e-10!17;UBERON:0003258!6.82e-10!17;UBERON:0000926!2.76e-09!193;UBERON:0004120!2.76e-09!193;UBERON:0006603!2.76e-09!193;UBERON:0002100!9.79e-09!98;UBERON:0001048!1.17e-08!147;UBERON:0009569!1.25e-08!66;UBERON:0003103!2.56e-08!43;UBERON:0002048!7.28e-08!14;UBERON:0000117!7.28e-08!14;UBERON:0000171!7.28e-08!14;UBERON:0000170!7.28e-08!14;UBERON:0005597!7.28e-08!14;UBERON:0000118!7.28e-08!14;UBERON:0003886!1.56e-07!38;UBERON:0007100!3.29e-07!18;UBERON:0000948!3.29e-07!18;UBERON:0005498!3.29e-07!18;UBERON:0004140!3.29e-07!18;UBERON:0009881!3.29e-07!18;UBERON:0004141!3.29e-07!18;UBERON:0003084!3.29e-07!18;UBERON:0007005!3.29e-07!18;UBERON:0004139!3.29e-07!18;UBERON:0004291!3.29e-07!18;UBERON:0002323!4.71e-07!37;UBERON:0004458!4.71e-07!37;UBERON:0002553!6.64e-07!39 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005177,2.23e-13,79;UBERON:0002100,3.81e-12,90;UBERON:0005178,2.52e-10,17;UBERON:0005181,2.52e-10,17;UBERON:0002224,2.52e-10,17;UBERON:0000915,2.52e-10,17;UBERON:0008947,2.52e-10,17;UBERON:0003258,2.52e-10,17;UBERON:0009569,3.83e-09,66;UBERON:0003103,2.62e-08,43;UBERON:0002048,3.42e-08,14;UBERON:0000117,3.42e-08,14;UBERON:0000171,3.42e-08,14;UBERON:0000170,3.42e-08,14;UBERON:0005597,3.42e-08,14;UBERON:0000118,3.42e-08,14;UBERON:0007100,1.67e-07,18;UBERON:0000948,1.67e-07,18;UBERON:0005498,1.67e-07,18;UBERON:0004140,1.67e-07,18;UBERON:0009881,1.67e-07,18;UBERON:0004141,1.67e-07,18;UBERON:0003084,1.67e-07,18;UBERON:0007005,1.67e-07,18;UBERON:0004139,1.67e-07,18;UBERON:0004291,1.67e-07,18;UBERON:0003886,2.10e-07,38;UBERON:0002323,6.53e-07,37;UBERON:0004458,6.53e-07,37;UBERON:0002553,7.16e-07,39;UBERON:0005153,7.69e-07,17 | |||
|phase1_expression=0.640595388419176,5.58360652222978,5.0049916332849,0,2.00358291978539,0,0.233612640595526,0,0.140788722151667,0,0,0,0.171200729931206,0,0,0,0,0,0,0,4.33720779770456,2.08510997521859,0,0.159992422793407,0.22940928106717,2.8711598205751,1.29228598847722,1.29282739611533,0.760093677825496,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0,0,0.58328969722285,0.839918529752175,0,0,0,0,1.28629718017973,63.8969571063427,382.628692469862,0,0,0,0,1.77858959222228,0,0,0,0,0,0.207379224616955,0,0.210324961351382,0.856952953211411,0.662605622854841,0,0,0,0,0.510749352340751,0,0.131886287730194,0.0914876436024097,0.52091337055676,0.837548997004143,1.12552522006336,1.22238598221448,0,0.142371680799103,0,0,0.0755715601067855,3.18850937571846,2.58127163094416,0,0,0,0,5.47733238513832,0,0,0,3.66192891419369,0,0,0,114.09077861291,96.0233890150624,102.115937892986,4.68153906848146,0,3.41416919849097,5.72501578328248,10.0473607843007,12.9144678463393,5.72746034099966,14.1106448562846,3.01599819191221,67.9786161269528,42.0784128636943,1.76922110389975,0.808834249737046,0,0,3.72783522436244,0,0.209446706813455,3.32094171771169,2.27648736561249,1.19980546198682,1.27070227073065,0.299581278809645,1.37250180845588,0,1.56441888173049,0.511430914660661,0,0.486723789203273,47.660822281948,9.82815067819735,52.3136109957707,35.7751155007006,0.650602214813519,2.5289231487682,12.0641626969584,13.2620239695429,17.9616357759506,14.3487366719032,6.65282244374075,42.6860561719376,4.74249584452253,4.34943984385984,9.14945845652534,12.9325482132269,78.4093242816186,13.5818344943645,1.02891068203972,15.1266042782055,0,0,0.284163499395593,31.8973689704673,22.9835538781474,17.4660199617184,14.4414288706978,10.6252685143598,23.4486011588815,19.0677834695334,16.0964040839772,17.6315666974426,13.8230273927324,11.3275550214576,9.48505071686512,9.0643992203706,22.6136618749782,20.1309628140558,2.73376933133365,0.205809224758569,0,1.58670339998127,22.82184280727,26.2427439202296,15.3352278973291,9.4791256572971,8.2279876222602,10.4624094361908,4.2707615539006,11.3642278759568,8.79673230800943,11.7384318504279,6.62877896205008,3.59527763461689,3.6743468478698,2.78797782556114,1.51734320762465,2.62771579002376,5.63538678365402,22.4016460629846,25.7956807932942,26.3009324588695,8.91635173452028,13.8753539100826,7.84993639206874,7.77402132707343,0.889357881261447,3.50374722003798,2.94838492669805,2.24862112384854,2.23146133527353,2.894125917029,4.07401362850272,6.04161888646702,4.05338066937588,4.11842119782122,2.87536413054709,7.07067800570156,9.67316786655138,1.76805214562978,4.30553792452589,1.4473305640901,57.4582421418141,14.5908387063273,8.31121379854332,10.0149600607361,12.2038929110021,16.4156132292979,38.0869825417622,50.7347484430277,51.3890569786183,62.6745071706033,57.5631714853528,81.7677940431533,71.6642674743467,109.210039229041,0,0,0,0,0.963303539926752,0.234423373184406,0,0,0.315508219416257,0.390438744296638,0,0,0.222798674082394,0,0,0,0,1.28528526568723,34.0656204499845,39.5305640141307,61.2454967169446,16.6619824202261,13.2745138339963,9.95400608235424,8.46505959501303,9.6188590675508,14.7650946440386,14.1420168054207,28.9439688348408,14.9048829085777,14.6163925137736,15.1697643809192,9.48767477174989,18.5643977846736,0,0.18006109403131,0.388076051348264,1.71469628025274,0.177340233642274,0.178368817602071,0.329098041204242,0.304464949114599,1.87737366450968,7.62595455109753,70.1280305814779,1.31909002353184,1.93757312035087,1.08563264870681,1.67121281604391,2.29797259643086,6.12109756922687,0.18542530201051,1.70870880797853,30.1324827226305,19.4454253738197,1.69531611304222,2.1871076435364,1.83022538565218,0.169978429993855,0,0.276399947608848,1.90934123603023,9.64824780422463,17.6887936400358,52.0585742761082,48.2993963793423,47.1663137691744,55.4292463641613,32.482808100057,10.4702376793612,2.85152941241944,0,0,12.5593898676942,7.61109056102649,8.36140109879405,9.04118764344118,7.43406952159424,7.98029222791127,5.33837977860195,2.09718688851422,0.966336483304024,0.864090018773596,2.21207784439725,1.82452693761148,1.64337531463724,2.33857481360031,2.68540043501222,2.78153896693771,0.480781798079875,0.738447635872886,3.23092639834072,0.15241361331,0.504130925684203,0.682205165178267,0.288635524920988,1.5193997283604,0,0,0,0,1227.9130596686,16.516057839704,8.60812634056146,12.0046292284277,46.6462056752888,0.564751842617067,0,0.572895513439397,0.343706364687375,0.685082519770642,0.755393897389701,0,0.900642406448441,0.453142408984205,0,1.24544817101012,3.59122386060928,3.92687293234509,43.7592090722929,11.528723944539,4.41224420280034,11.1123363900808,12.7741735488114,9.62757628775446,7.83361356467772,12.673964994512,10.3744487762342,10.0196412992774,8.89949618427683,8.78762675020883,11.4310485907938,9.03897742369873,8.48800570040302,8.24171801606613,11.0399190100798,10.9718160763333,9.22874192028555,8.10683045820891,11.482366913954,10.257922465271,10.9152844180263,9.3293266165114,11.8381370147029,10.4569167661314,10.1005608898393,7.47400614182297,8.66839444904958,6.95692773388472,10.3807683594597,12.7318363247553,11.2414760072076,15.2055545489515,22.7763317291196,3.63447830930802,1.32354851471709,2.08681052058379 | |phase1_expression=0.640595388419176,5.58360652222978,5.0049916332849,0,2.00358291978539,0,0.233612640595526,0,0.140788722151667,0,0,0,0.171200729931206,0,0,0,0,0,0,0,4.33720779770456,2.08510997521859,0,0.159992422793407,0.22940928106717,2.8711598205751,1.29228598847722,1.29282739611533,0.760093677825496,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0,0,0.58328969722285,0.839918529752175,0,0,0,0,1.28629718017973,63.8969571063427,382.628692469862,0,0,0,0,1.77858959222228,0,0,0,0,0,0.207379224616955,0,0.210324961351382,0.856952953211411,0.662605622854841,0,0,0,0,0.510749352340751,0,0.131886287730194,0.0914876436024097,0.52091337055676,0.837548997004143,1.12552522006336,1.22238598221448,0,0.142371680799103,0,0,0.0755715601067855,3.18850937571846,2.58127163094416,0,0,0,0,5.47733238513832,0,0,0,3.66192891419369,0,0,0,114.09077861291,96.0233890150624,102.115937892986,4.68153906848146,0,3.41416919849097,5.72501578328248,10.0473607843007,12.9144678463393,5.72746034099966,14.1106448562846,3.01599819191221,67.9786161269528,42.0784128636943,1.76922110389975,0.808834249737046,0,0,3.72783522436244,0,0.209446706813455,3.32094171771169,2.27648736561249,1.19980546198682,1.27070227073065,0.299581278809645,1.37250180845588,0,1.56441888173049,0.511430914660661,0,0.486723789203273,47.660822281948,9.82815067819735,52.3136109957707,35.7751155007006,0.650602214813519,2.5289231487682,12.0641626969584,13.2620239695429,17.9616357759506,14.3487366719032,6.65282244374075,42.6860561719376,4.74249584452253,4.34943984385984,9.14945845652534,12.9325482132269,78.4093242816186,13.5818344943645,1.02891068203972,15.1266042782055,0,0,0.284163499395593,31.8973689704673,22.9835538781474,17.4660199617184,14.4414288706978,10.6252685143598,23.4486011588815,19.0677834695334,16.0964040839772,17.6315666974426,13.8230273927324,11.3275550214576,9.48505071686512,9.0643992203706,22.6136618749782,20.1309628140558,2.73376933133365,0.205809224758569,0,1.58670339998127,22.82184280727,26.2427439202296,15.3352278973291,9.4791256572971,8.2279876222602,10.4624094361908,4.2707615539006,11.3642278759568,8.79673230800943,11.7384318504279,6.62877896205008,3.59527763461689,3.6743468478698,2.78797782556114,1.51734320762465,2.62771579002376,5.63538678365402,22.4016460629846,25.7956807932942,26.3009324588695,8.91635173452028,13.8753539100826,7.84993639206874,7.77402132707343,0.889357881261447,3.50374722003798,2.94838492669805,2.24862112384854,2.23146133527353,2.894125917029,4.07401362850272,6.04161888646702,4.05338066937588,4.11842119782122,2.87536413054709,7.07067800570156,9.67316786655138,1.76805214562978,4.30553792452589,1.4473305640901,57.4582421418141,14.5908387063273,8.31121379854332,10.0149600607361,12.2038929110021,16.4156132292979,38.0869825417622,50.7347484430277,51.3890569786183,62.6745071706033,57.5631714853528,81.7677940431533,71.6642674743467,109.210039229041,0,0,0,0,0.963303539926752,0.234423373184406,0,0,0.315508219416257,0.390438744296638,0,0,0.222798674082394,0,0,0,0,1.28528526568723,34.0656204499845,39.5305640141307,61.2454967169446,16.6619824202261,13.2745138339963,9.95400608235424,8.46505959501303,9.6188590675508,14.7650946440386,14.1420168054207,28.9439688348408,14.9048829085777,14.6163925137736,15.1697643809192,9.48767477174989,18.5643977846736,0,0.18006109403131,0.388076051348264,1.71469628025274,0.177340233642274,0.178368817602071,0.329098041204242,0.304464949114599,1.87737366450968,7.62595455109753,70.1280305814779,1.31909002353184,1.93757312035087,1.08563264870681,1.67121281604391,2.29797259643086,6.12109756922687,0.18542530201051,1.70870880797853,30.1324827226305,19.4454253738197,1.69531611304222,2.1871076435364,1.83022538565218,0.169978429993855,0,0.276399947608848,1.90934123603023,9.64824780422463,17.6887936400358,52.0585742761082,48.2993963793423,47.1663137691744,55.4292463641613,32.482808100057,10.4702376793612,2.85152941241944,0,0,12.5593898676942,7.61109056102649,8.36140109879405,9.04118764344118,7.43406952159424,7.98029222791127,5.33837977860195,2.09718688851422,0.966336483304024,0.864090018773596,2.21207784439725,1.82452693761148,1.64337531463724,2.33857481360031,2.68540043501222,2.78153896693771,0.480781798079875,0.738447635872886,3.23092639834072,0.15241361331,0.504130925684203,0.682205165178267,0.288635524920988,1.5193997283604,0,0,0,0,1227.9130596686,16.516057839704,8.60812634056146,12.0046292284277,46.6462056752888,0.564751842617067,0,0.572895513439397,0.343706364687375,0.685082519770642,0.755393897389701,0,0.900642406448441,0.453142408984205,0,1.24544817101012,3.59122386060928,3.92687293234509,43.7592090722929,11.528723944539,4.41224420280034,11.1123363900808,12.7741735488114,9.62757628775446,7.83361356467772,12.673964994512,10.3744487762342,10.0196412992774,8.89949618427683,8.78762675020883,11.4310485907938,9.03897742369873,8.48800570040302,8.24171801606613,11.0399190100798,10.9718160763333,9.22874192028555,8.10683045820891,11.482366913954,10.257922465271,10.9152844180263,9.3293266165114,11.8381370147029,10.4569167661314,10.1005608898393,7.47400614182297,8.66839444904958,6.95692773388472,10.3807683594597,12.7318363247553,11.2414760072076,15.2055545489515,22.7763317291196,3.63447830930802,1.32354851471709,2.08681052058379 | ||
|short_description=p1@Upk1b | |short_description=p1@Upk1b | ||
}} | }} |
Latest revision as of 00:12, 2 October 2015
Short description: | p1@Upk1b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Upk1b_5end |
Coexpression cluster: | MCL_coexpression_mm9:95 |
Association with transcript: | 0bp_to_ENSMUST00000057767, NM_178924, uc007zfm.2_5end |
EntrezGene: | Upk1b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
trunk region element | 2.23e-13 | 79 |
trunk | 3.81e-12 | 90 |
thoracic cavity element | 2.52e-10 | 17 |
thoracic segment organ | 2.52e-10 | 17 |
thoracic cavity | 2.52e-10 | 17 |
thoracic segment of trunk | 2.52e-10 | 17 |
respiratory primordium | 2.52e-10 | 17 |
endoderm of foregut | 2.52e-10 | 17 |
subdivision of trunk | 3.83e-09 | 66 |
compound organ | 2.62e-08 | 43 |
lung | 3.42e-08 | 14 |
respiratory tube | 3.42e-08 | 14 |
respiration organ | 3.42e-08 | 14 |
pair of lungs | 3.42e-08 | 14 |
lung primordium | 3.42e-08 | 14 |
lung bud | 3.42e-08 | 14 |
primary circulatory organ | 1.67e-07 | 18 |
heart | 1.67e-07 | 18 |
primitive heart tube | 1.67e-07 | 18 |
primary heart field | 1.67e-07 | 18 |
anterior lateral plate mesoderm | 1.67e-07 | 18 |
heart tube | 1.67e-07 | 18 |
heart primordium | 1.67e-07 | 18 |
cardiac mesoderm | 1.67e-07 | 18 |
cardiogenic plate | 1.67e-07 | 18 |
heart rudiment | 1.67e-07 | 18 |
body cavity precursor | 2.10e-07 | 38 |
body cavity | 6.53e-07 | 37 |
body cavity or lining | 6.53e-07 | 37 |
anatomical cavity | 7.16e-07 | 39 |
epithelial bud | 7.69e-07 | 17 |