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MCL coexpression mm9:595: Difference between revisions

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{{MCL_coexpression_mm9
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|coexpression_dpi_cluster_scores_median=0,0,0,-0.0107456460842721,0,0,0,0,0,0,0,0,0,0,0.178320473976764,0.0455058517795472,0.146801813883064,0,0,0,0.0354470656487682,0.0205563265474198,0,-0.0330788872378041,-0.000209426496631137,0,0,-0.0103080408382384,0,-0.00387299304126388,0,1.60645067177937,1.62732296923677,1.26746448257633,0,0,0,0,0,0,0,0,-0.0330788872378041,0,0,0,0,0,0,0,0.0141652021221487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0107132140453818,0,0,-0.0330788872378041,-0.0330788872378041,-0.0330788872378041,0,0,0,0.0469568706916304,0,0,0.0285110106787897,0.0680510656570606,0.039266362899945,0.058813365335132,0,0,0.047967174931957,0,0,0.021432326293841,0.00389446957757024,0,0,0,-0.0330788872378041,0,0.131668412628883,0,0.115216605667008,0,0,-0.0231911317415248,0,0,0,-0.000430742168049142,0.0366925574806029,0.096497738357694,0,0,0,0,0,0,0.0072541037221767,0,0.00422026581827887,0,0.00295445247344508,0,0.0612321053530763,0,0.0340328470754278,0.0417736040640984,0,0,0,0.0482787562006795,0.0148749851510073,0.000470145490272355,0.0466564550977341,0.0273540960150481,0,0,0.00198623256026121,0,0,0,0,0,0.00830874612946085,0,0,0,0,0,-0.0330788872378041,0,0.0114499290685218,0,0,0,0.0619621762826279,0,0,0,0,0,0,0,0,0,0.0377128719094677,0.0480527148099047,0,0.0805006992779881,0.0384935222863376,0.0570083229196787,0,0,0,0,0,0.0977542772047291,0.127341910084333,0.0821937923208025,0.0613766297370184,0.0189870858574722,0.0992027777587482,0.0708073134365748,0.0825652332681441,0,0,0,0,0,0,0,0,0,0,0.0340456146751302,0,0,0.0165557006073428,0,0,0.043440458408578,0.00742712124219125,0,0,0,0,0,0,0,0,0,0.0900766362158161,0,0,0,0,0,0,0,0,0,0,0,0.0219865109438495,0.0711694759496908,0,0,0,0.0943944778653996,0.0422048334776567,0.0375187909878671,0,0,0.0402564102520525,0,0,0,0,0,0,0,0.081128217832467,0,0,0,0,0,0.0590232044212432,0.0737458841334685,0,0,0.0260476135563607,0,0,0,0,0,0.0454085882338177,0.085517401864794,0.143804320962281,0.102578051948961,0.0698552844836888,0.0752913581394886,0.123508513604782,0.119976782842104,0.0480237872484279,-0.0183427201590534,0.0584902711502071,0,0.0472195966811438,0.00815012136944745,0,0,0,0,0,0,0,0.0605152268483434,0.0272055675936198,0.0440895196183134,0,0.0738798657515689,0.0481920468563092,0.0171768208882218,0.00190701942970539,0,0,0,0.040828879212024,0.0424616899933645,0.0436030991163209,0,0,0,0,0,0,0,0,0,0,0,0.164348315455163,0.0495800221416358,0,0,0,0,0.0247957260134727,0,0,0,0,0,0,0,0,0,0,0,0.0061809213204872,0,0.034229042449623,0.10021591066197,0.00283939553702817,0,0,0.00753856647173845,0.0050111315935478,0,0,0.0664995641660601,0,0.00136620127416931,0.0121269368029194,0,0.00582939800963945,0.0306564568548487,0.0470336297561968,0,0.0325888080138775,0.0398082273340001,0.00700164169142915,0.0321994968716222,0.0404510700885956,0.0678996586311492,0.0729583017401753,0.0394762787347549,0.0491820130543513,0.057286066112137,0,0,0.0517153672983279,0,0.0766064454112358,0,0.0632097614930175,0.0381936783899936,0,0,0
|gostat_on_MCL_coexpression=GO:0005697;telomerase holoenzyme complex;0.0187640387881444;21748!GO:0000332;template for synthesis of G-rich strand of telomere DNA activity;0.0187640387881444;21748!GO:0003720;telomerase activity;0.0250159769072712;21748!GO:0007004;telomere maintenance via telomerase;0.0375034110426916;21748!GO:0050840;extracellular matrix binding;0.0375034110426916;16399!GO:0006278;RNA-dependent DNA replication;0.0375034110426916;21748!GO:0003964;RNA-directed DNA polymerase activity;0.0375034110426916;21748!GO:0010259;multicellular organismal aging;0.046863854821732;21748!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=
}}

Latest revision as of 15:34, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr11:102331458..102331479,-p3@Itga2b
Mm9::chr19:8798483..8798487,+p1@ENSMUST00000082787
Mm9::chr1:120355840..120355844,-p1@2900060B14Rik
Mm9::chr2:167875908..167875928,-p@chr2:167875908..167875928
-
Mm9::chr2:26431597..26431627,+p@chr2:26431597..26431627
+
Mm9::chr2:26495756..26495769,-p1@Snhg7
Mm9::chr2:32219200..32219213,+p5@Ciz1
Mm9::chr3:95090660..95090704,+p@chr3:95090660..95090704
+
Mm9::chr3:96218748..96218762,-p1@Terc
Mm9::chr6:88149715..88149727,+p@chr6:88149715..88149727
+
Mm9::chrX:133654245..133654253,-p3@Esx1
Mm9::chrX:160480258..160480272,-p@chrX:160480258..160480272
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005697telomerase holoenzyme complex0.0187640387881444
GO:0000332template for synthesis of G-rich strand of telomere DNA activity0.0187640387881444
GO:0003720telomerase activity0.0250159769072712
GO:0007004telomere maintenance via telomerase0.0375034110426916
GO:0050840extracellular matrix binding0.0375034110426916
GO:0006278RNA-dependent DNA replication0.0375034110426916
GO:0003964RNA-directed DNA polymerase activity0.0375034110426916
GO:0010259multicellular organismal aging0.046863854821732



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br><br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.0573058
MA0004.10.819913
MA0006.10.960584
MA0007.10.290695
MA0009.10.709264
MA0014.10.0459808
MA0017.10.546298
MA0019.10.535691
MA0024.10.667197
MA0025.12.15573
MA0027.12.34178
MA0028.10.516099
MA0029.10.64639
MA0030.10.65267
MA0031.10.618697
MA0038.10.432665
MA0040.10.721328
MA0041.10.239557
MA0042.10.648006
MA0043.10.802848
MA0046.10.743934
MA0048.10.168666
MA0050.10.337476
MA0051.11.12244
MA0052.10.729105
MA0055.10.226387
MA0056.10
MA0057.10.151898
MA0058.10.223242
MA0059.10.233271
MA0060.10.351437
MA0061.10.40468
MA0063.10
MA0066.10.422624
MA0067.11.04514
MA0068.10.157638
MA0069.10.729433
MA0070.10.720077
MA0071.10.894189
MA0072.10.711905
MA0073.10.0628716
MA0074.11.01196
MA0076.11.10234
MA0077.10.691048
MA0078.10.471303
MA0081.10.252371
MA0083.10.802078
MA0084.11.3693
MA0087.10.760279
MA0088.10.459114
MA0089.10
MA0090.10.27428
MA0091.10.315003
MA0092.10.753925
MA0093.10.531567
MA0095.10
MA0098.10
MA0100.10.379666
MA0101.10.675688
MA0103.10.19444
MA0105.10.0633795
MA0106.10.478503
MA0107.11.05738
MA0108.21.37095
MA0109.10
MA0111.10.286331
MA0113.10.452439
MA0114.10.127366
MA0115.10.805567
MA0116.10.165534
MA0117.10.774259
MA0119.10.241106
MA0122.10.793507
MA0124.10.992825
MA0125.10.920215
MA0130.10
MA0131.10.531427
MA0132.10
MA0133.10
MA0135.10.838263
MA0136.10.408073
MA0139.10.0883913
MA0140.11.75428
MA0141.10.210047
MA0142.10.604892
MA0143.10.467531
MA0144.10.807435
MA0145.10.793629
MA0146.10.142424
MA0147.11.36583
MA0148.10.317692
MA0149.10.245177
MA0062.20.507063
MA0035.20.998181
MA0039.20.0997675
MA0138.20.523978
MA0002.20.0901987
MA0137.21.1287
MA0104.21.63782
MA0047.20.431964
MA0112.20.025769
MA0065.20.109524
MA0150.10.290598
MA0151.10
MA0152.10.432062
MA0153.10.854464
MA0154.10.042968
MA0155.10.127763
MA0156.10.580656
MA0157.10.574484
MA0158.10
MA0159.10.145521
MA0160.10.320315
MA0161.10
MA0162.10.509255
MA0163.10.069011
MA0164.11.052
MA0080.20.556674
MA0018.20.417217
MA0099.20.518072
MA0079.22.94469e-06
MA0102.21.42135
MA0258.10.118033
MA0259.10.812279
MA0442.10
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:595&oldid=3072594"