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MCL coexpression mm9:390: Difference between revisions

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{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0003102!3.53e-07!22
}}

Latest revision as of 15:13, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:23069698..23069725,-p3@Eya4
Mm9::chr10:23070614..23070638,-p2@Eya4
Mm9::chr13:113237531..113237540,-p@chr13:113237531..113237540
-
Mm9::chr13:31912456..31912489,-p@chr13:31912456..31912489
-
Mm9::chr15:43002355..43002380,-p1@Rspo2
Mm9::chr15:43002382..43002400,-p2@Rspo2
Mm9::chr15:6531079..6531094,-p@chr15:6531079..6531094
-
Mm9::chr16:14705746..14705761,+p4@Snai2
Mm9::chr16:14705925..14705951,+p1@Snai2
Mm9::chr16:14705961..14705978,+p2@Snai2
Mm9::chr16:34784962..34784972,+p16@Mylk
Mm9::chr16:34785003..34785021,+p12@Mylk
Mm9::chr17:56249238..56249247,-p5@Plin4
Mm9::chr18:52689501..52689544,-p5@Lox
Mm9::chr1:135874056..135874067,+p@chr1:135874056..135874067
+
Mm9::chr1:165242551..165242554,-p@chr1:165242551..165242554
-
Mm9::chr3:63099362..63099428,+p5@Mme
Mm9::chr5:65001930..65001948,-p1@Gm3716
Mm9::chr6:117121494..117121505,+p@chr6:117121494..117121505
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
surface structure3.53e-0722


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.0394173
MA0004.10.178381
MA0006.10.0769247
MA0007.10.168178
MA0009.10.535932
MA0014.10.133827
MA0017.10.6294
MA0019.10.376509
MA0024.10.496718
MA0025.10.751694
MA0027.12.14278
MA0028.10.280241
MA0029.10.477444
MA0030.10.483253
MA0031.10.451927
MA0038.11.42188
MA0040.10.547233
MA0041.10.129017
MA0042.10.121046
MA0043.10.624178
MA0046.10.568473
MA0048.10.503616
MA0050.10.205672
MA0051.10.795476
MA0052.11.36531
MA0055.10.106374
MA0056.10
MA0057.10.454273
MA0058.10.117003
MA0059.10.124358
MA0060.10.659439
MA0061.10.438647
MA0063.10
MA0066.10.277072
MA0067.10.857286
MA0068.11.77703
MA0069.10.554839
MA0070.10.54606
MA0071.10.20507
MA0072.10.538403
MA0073.12.01297
MA0074.10.249359
MA0076.10.331592
MA0077.11.28976
MA0078.10.855296
MA0081.10.8469
MA0083.11.51035
MA0084.11.1752
MA0087.10.583879
MA0088.10.0711238
MA0089.10
MA0090.10.15538
MA0091.10.549843
MA0092.10.471747
MA0093.10.0864726
MA0095.10
MA0098.10
MA0100.10.2406
MA0101.10.40675
MA0103.10.657254
MA0105.10.213264
MA0106.10.869465
MA0107.10.093115
MA0108.20.395878
MA0109.10
MA0111.10.164756
MA0113.10.302851
MA0114.10.75813
MA0115.10.626759
MA0116.10.265278
MA0117.10.597086
MA0119.10.407675
MA0122.10.615314
MA0124.10.80652
MA0125.10.736412
MA0130.10
MA0131.10.372683
MA0132.10
MA0133.10
MA0135.10.657882
MA0136.10.264624
MA0139.10.550862
MA0140.10.675435
MA0141.10.348672
MA0142.10.439269
MA0143.10.847878
MA0144.10.19926
MA0145.10.76606
MA0146.10.29036
MA0147.10.0593437
MA0148.10.189643
MA0149.12.60106
MA0062.20.0890335
MA0035.20.244063
MA0039.20.044279
MA0138.20.959075
MA0002.22.2253
MA0137.21.15722
MA0104.20.0366484
MA0047.20.285109
MA0112.20.0816855
MA0065.20.180795
MA0150.11.54487
MA0151.10
MA0152.10.285194
MA0153.10.67335
MA0154.10.755185
MA0155.10.100954
MA0156.10.100572
MA0157.10.411541
MA0158.10
MA0159.10.494347
MA0160.10.191754
MA0161.10
MA0162.10.0315479
MA0163.10.466163
MA0164.10.264905
MA0080.20.31151
MA0018.20.272436
MA0099.20.947425
MA0079.21.56471
MA0102.21.22663
MA0258.10.0472094
MA0259.10.444163
MA0442.10
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