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MCL coexpression mm9:142: Difference between revisions

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{{MCL_coexpression_mm9
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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.779768124052708,0.810860473898023,0.490533640609026,0.798932492718723,1.31823699848151,0.688783020098688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000355!3.30e-15!9
|ontology_enrichment_disease=DOID:0060100!8.97e-44!3;DOID:4045!8.97e-44!3;DOID:0050686!2.23e-22!6
|ontology_enrichment_uberon=UBERON:0001134!3.30e-15!9;UBERON:0002036!3.30e-15!9;UBERON:0002385!3.30e-15!9;UBERON:0000486!3.30e-15!9;UBERON:0007503!3.30e-15!9;UBERON:0001015!3.30e-15!9;UBERON:0002329!3.30e-15!9;UBERON:0003082!3.30e-15!9;UBERON:0003059!3.30e-15!9;UBERON:0007282!3.30e-15!9;UBERON:0004290!3.30e-15!9;UBERON:0009618!3.30e-15!9;UBERON:0000383!9.08e-14!10;UBERON:0007524!1.37e-12!11;UBERON:0003077!1.37e-12!11;UBERON:0007285!1.37e-12!11
}}

Latest revision as of 14:46, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:117520003..117520013,-p@chr10:117520003..117520013
-
Mm9::chr10:59835236..59835239,+p@chr10:59835236..59835239
+
Mm9::chr11:117849413..117849445,-p@chr11:117849413..117849445
-
Mm9::chr11:118073163..118073184,-p@chr11:118073163..118073184
-
Mm9::chr11:119737318..119737331,+p@chr11:119737318..119737331
+
Mm9::chr12:83346672..83346688,+p@chr12:83346672..83346688
+
Mm9::chr12:85515884..85515893,-p@chr12:85515884..85515893
-
Mm9::chr12:85558629..85558640,+p@chr12:85558629..85558640
+
Mm9::chr14:45775493..45775518,+p@chr14:45775493..45775518
+
Mm9::chr15:66641702..66641705,-p@chr15:66641702..66641705
-
Mm9::chr15:82825481..82825483,-p@chr15:82825481..82825483
-
Mm9::chr16:48871082..48871092,+p@chr16:48871082..48871092
+
Mm9::chr16:57196765..57196784,-p@chr16:57196765..57196784
-
Mm9::chr16:93722144..93722150,-p@chr16:93722144..93722150
-
Mm9::chr16:95924803..95924807,+p@chr16:95924803..95924807
+
Mm9::chr16:96053449..96053459,+p@chr16:96053449..96053459
+
Mm9::chr17:26651705..26651710,-p@chr17:26651705..26651710
-
Mm9::chr17:28660263..28660272,+p2@ENSMUST00000095448
Mm9::chr17:84518547..84518558,-p@chr17:84518547..84518558
-
Mm9::chr17:84525638..84525656,-p@chr17:84525638..84525656
-
Mm9::chr18:56893743..56893751,+p@chr18:56893743..56893751
+
Mm9::chr19:32255815..32255822,-p@chr19:32255815..32255822
-
Mm9::chr19:32329584..32329599,-p@chr19:32329584..32329599
-
Mm9::chr19:40753809..40753829,+p@chr19:40753809..40753829
+
Mm9::chr19:46693137..46693143,+p@chr19:46693137..46693143
+
Mm9::chr19:46938027..46938040,-p@chr19:46938027..46938040
-
Mm9::chr19:46938046..46938059,-p@chr19:46938046..46938059
-
Mm9::chr19:47036298..47036310,+p@chr19:47036298..47036310
+
Mm9::chr19:47060008..47060022,+p@chr19:47060008..47060022
+
Mm9::chr19:47062299..47062310,-p@chr19:47062299..47062310
-
Mm9::chr19:47062415..47062446,+p@chr19:47062415..47062446
+
Mm9::chr1:152011948..152011956,-p5@ENSMUST00000163840
Mm9::chr1:168269551..168269558,+p@chr1:168269551..168269558
+
Mm9::chr1:196803248..196803253,+p@chr1:196803248..196803253
+
Mm9::chr1:89518093..89518115,-p@chr1:89518093..89518115
-
Mm9::chr2:117751175..117751194,-p@chr2:117751175..117751194
-
Mm9::chr2:117791518..117791537,-p@chr2:117791518..117791537
-
Mm9::chr2:117815963..117815979,+p@chr2:117815963..117815979
+
Mm9::chr2:117837512..117837544,-p@chr2:117837512..117837544
-
Mm9::chr2:126426305..126426331,-p@chr2:126426305..126426331
-
Mm9::chr2:167585848..167585852,+p@chr2:167585848..167585852
+
Mm9::chr2:167602769..167602782,-p@chr2:167602769..167602782
-
Mm9::chr2:172223560..172223565,-p@chr2:172223560..172223565
-
Mm9::chr2:38389209..38389215,+p@chr2:38389209..38389215
+
Mm9::chr2:69220158..69220165,+p@chr2:69220158..69220165
+
Mm9::chr2:69252565..69252576,-p@chr2:69252565..69252576
-
Mm9::chr2:73300486..73300505,-p@chr2:73300486..73300505
-
Mm9::chr3:105950473..105950474,+p@chr3:105950473..105950474
+
Mm9::chr3:131137386..131137389,-p@chr3:131137386..131137389
-
Mm9::chr4:102297935..102297947,+p@chr4:102297935..102297947
+
Mm9::chr4:3576398..3576406,+p@chr4:3576398..3576406
+
Mm9::chr4:95407927..95407931,-p@chr4:95407927..95407931
-
Mm9::chr5:136935850..136935859,-p@chr5:136935850..136935859
-
Mm9::chr5:32435418..32435426,-p2@Gm10463
Mm9::chr5:32436198..32436211,+p@chr5:32436198..32436211
+
Mm9::chr5:33630708..33630712,+p@chr5:33630708..33630712
+
Mm9::chr5:91125117..91125120,-p@chr5:91125117..91125120
-
Mm9::chr5:91125128..91125142,-p@chr5:91125128..91125142
-
Mm9::chr5:91129231..91129236,-p@chr5:91129231..91129236
-
Mm9::chr5:98460114..98460129,+p@chr5:98460114..98460129
+
Mm9::chr5:98460470..98460482,-p14@Antxr2
Mm9::chr5:98460490..98460506,-p@chr5:98460490..98460506
-
Mm9::chr6:136662633..136662635,-p@chr6:136662633..136662635
-
Mm9::chr7:106684550..106684563,-p@chr7:106684550..106684563
-
Mm9::chr7:106684966..106684968,+p@chr7:106684966..106684968
+
Mm9::chr7:147170458..147170467,-p@chr7:147170458..147170467
-
Mm9::chr7:16820748..16820752,-p@chr7:16820748..16820752
-
Mm9::chr7:25230713..25230722,-p7@Irgc1
Mm9::chr7:25242777..25242788,-p@chr7:25242777..25242788
-
Mm9::chr7:25245168..25245178,+p@chr7:25245168..25245178
+
Mm9::chr7:97168148..97168167,-p@chr7:97168148..97168167
-
Mm9::chr7:97171920..97171923,+p@chr7:97171920..97171923
+
Mm9::chr7:97173130..97173134,-p@chr7:97173130..97173134
-
Mm9::chr8:122566661..122566668,-p@chr8:122566661..122566668
-
Mm9::chr8:3659024..3659046,-p@chr8:3659024..3659046
-
Mm9::chr9:45054257..45054261,-p@chr9:45054257..45054261
-
Mm9::chr9:59159588..59159598,+p@chr9:59159588..59159598
+
Mm9::chr9:64651245..64651281,-p@chr9:64651245..64651281
-
Mm9::chr9:96519592..96519622,+p@chr9:96519592..96519622
+
Mm9::chr9:96531044..96531064,-p@chr9:96531044..96531064
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen
multi-potent skeletal muscle stem cell3.30e-159

Disease
Ontology termp-valuen
musculoskeletal system cancer8.97e-443
muscle cancer8.97e-443
organ system cancer2.23e-226


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.14.57006e-08
MA0004.10.00446905
MA0006.10.444338
MA0007.11.60838
MA0009.10.748631
MA0014.12.09049e-07
MA0017.10.56105
MA0019.11.07987
MA0024.10.096271
MA0025.10.701715
MA0027.11.52347
MA0028.10.00959158
MA0029.10.293701
MA0030.10.301176
MA0031.10.0755308
MA0038.10.432984
MA0040.10.775742
MA0041.10.902074
MA0042.11.09322
MA0043.10.965687
MA0046.10.13408
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MA0135.10.188143
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MA0062.20.0237007
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MA0138.20.374075
MA0002.22.57451
MA0137.21.19417
MA0104.20.00292075
MA0047.20.226054
MA0112.20.0697442
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MA0150.10.683797
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MA0162.16.18521e-07
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MA0099.21.01282
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MA0102.21.55295
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MA0442.10