FFCP PHASE1:Hg19::chr2:122407007..122407045,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:122407007..122407045,-
|short_description=p1@CLASP1
|description=CAGE_peak_1_at_CLASP1_5end
|association_with_transcript=6bp_to_ENST00000263710,ENST0000039...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23332 | |EntrezGene=23332 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17088 | |HGNC=17088 | ||
|TSSclassifier=strong | |||
|UniProt=Q7Z460,F5GWS0,F8WA11,B7ZLX3,A2RU21 | |UniProt=Q7Z460,F5GWS0,F8WA11,B7ZLX3,A2RU21 | ||
|association_with_transcript=6bp_to_ENST00000263710,ENST00000397587,ENST00000455322,ENST00000541377,NM_001142273,NM_001142274,NM_001207051,NM_015282,uc002tnc.2,uc002tng.1,uc010yyz.1,uc010yza.1,uc010yzb.1,uc010yzc.1_5end | |||
|cluster_id=chr2:122407007..122407045,- | |||
|description=CAGE_peak_1_at_CLASP1_5end | |||
|id=chr2:122407007..122407045,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;8.09e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.03e-26!115;UBERON:0001017!4.23e-21!82;UBERON:0000073!9.56e-20!94;UBERON:0001016!9.56e-20!94;UBERON:0005743!1.39e-19!86;UBERON:0001049!1.39e-18!57;UBERON:0005068!1.39e-18!57;UBERON:0006241!1.39e-18!57;UBERON:0007135!1.39e-18!57;UBERON:0000955!2.28e-18!69;UBERON:0006238!2.28e-18!69;UBERON:0002616!4.86e-17!59;UBERON:0002780!1.15e-15!41;UBERON:0001890!1.15e-15!41;UBERON:0006240!1.15e-15!41;UBERON:0003080!1.68e-15!42;UBERON:0002020!1.51e-14!34;UBERON:0003528!1.51e-14!34;UBERON:0001893!1.15e-13!34;UBERON:0001869!1.32e-13!32;UBERON:0002791!1.87e-13!33;UBERON:0002619!1.24e-11!22;UBERON:0000956!1.62e-11!25;UBERON:0000203!1.62e-11!25;UBERON:0002346!2.16e-11!90;UBERON:0001950!1.37e-10!20;UBERON:0003075!4.83e-10!86;UBERON:0007284!4.83e-10!86;UBERON:0000153!7.06e-08!129;UBERON:0007811!7.06e-08!129;UBERON:0000924!1.00e-07!173;UBERON:0006601!1.00e-07!173;UBERON:0003056!2.48e-07!61;UBERON:0004121!8.53e-07!169;UBERON:0000033!9.01e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.66e-12;32!UBERON:0002791;1.95e-12;32!UBERON:0003528;1.97e-12;34!UBERON:0002020;1.97e-12;34!UBERON:0001893;1.04e-11;34!UBERON:0002619;1.24e-11;22!UBERON:0000956;1.57e-11;25!UBERON:0000203;1.57e-11;25!UBERON:0002780;1.87e-11;41!UBERON:0001890;1.87e-11;41!UBERON:0001950;1.41e-10;20!UBERON:0000073;3.42e-10;53!UBERON:0002616;3.42e-10;53!UBERON:0001017;4.70e-09;75!UBERON:0000955;6.83e-09;68!UBERON:0001016;3.22e-08;83!UBERON:0007023;9.99e-08;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.44e-25,114;UBERON:0001016,3.23e-21,89;UBERON:0001017,3.50e-21,81;UBERON:0001049,1.03e-18,56;UBERON:0005068,1.03e-18,56;UBERON:0006241,1.03e-18,56;UBERON:0007135,1.03e-18,56;UBERON:0000955,1.86e-18,68;UBERON:0006238,1.86e-18,68;UBERON:0000073,1.38e-17,53;UBERON:0002616,1.38e-17,53;UBERON:0002780,1.15e-15,41;UBERON:0001890,1.15e-15,41;UBERON:0003080,1.15e-15,41;UBERON:0006240,1.15e-15,41;UBERON:0003528,1.51e-14,34;UBERON:0002020,1.51e-14,34;UBERON:0001893,1.15e-13,34;UBERON:0002791,1.28e-13,32;UBERON:0001869,1.32e-13,32;UBERON:0002346,5.47e-12,86;UBERON:0002619,1.24e-11,22;UBERON:0000956,1.62e-11,25;UBERON:0000203,1.62e-11,25;UBERON:0003075,1.35e-10,82;UBERON:0007284,1.35e-10,82;UBERON:0001950,1.37e-10,20;UBERON:0004121,6.41e-08,171;UBERON:0000924,6.41e-08,171;UBERON:0006601,6.41e-08,171;UBERON:0011216,1.17e-07,223;UBERON:0003056,1.61e-07,61 | |||
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| ||
|short_description=p1@CLASP1 | |||
}} | }} |
Latest revision as of 18:32, 16 September 2015
Short description: | p1@CLASP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CLASP1_5end |
Coexpression cluster: | NA |
Association with transcript: | 6bp_to_ENST00000263710, ENST00000397587, ENST00000455322, ENST00000541377, NM_001142273, NM_001142274, NM_001207051, NM_015282, uc002tnc.2, uc002tng.1, uc010yyz.1, uc010yza.1, uc010yzb.1, uc010yzc.1_5end |
EntrezGene: | CLASP1 |
HGNC: | 17088 |
UniProt: | Q7Z460F5GWS0F8WA11B7ZLX3A2RU21 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 2.44e-25 | 114 |
nervous system | 3.23e-21 | 89 |
central nervous system | 3.50e-21 | 81 |
neural tube | 1.03e-18 | 56 |
neural rod | 1.03e-18 | 56 |
future spinal cord | 1.03e-18 | 56 |
neural keel | 1.03e-18 | 56 |
brain | 1.86e-18 | 68 |
future brain | 1.86e-18 | 68 |
regional part of nervous system | 1.38e-17 | 53 |
regional part of brain | 1.38e-17 | 53 |
regional part of forebrain | 1.15e-15 | 41 |
forebrain | 1.15e-15 | 41 |
anterior neural tube | 1.15e-15 | 41 |
future forebrain | 1.15e-15 | 41 |
brain grey matter | 1.51e-14 | 34 |
gray matter | 1.51e-14 | 34 |
telencephalon | 1.15e-13 | 34 |
regional part of telencephalon | 1.28e-13 | 32 |
cerebral hemisphere | 1.32e-13 | 32 |
neurectoderm | 5.47e-12 | 86 |
regional part of cerebral cortex | 1.24e-11 | 22 |
cerebral cortex | 1.62e-11 | 25 |
pallium | 1.62e-11 | 25 |
neural plate | 1.35e-10 | 82 |
presumptive neural plate | 1.35e-10 | 82 |
neocortex | 1.37e-10 | 20 |
ectoderm-derived structure | 6.41e-08 | 171 |
ectoderm | 6.41e-08 | 171 |
presumptive ectoderm | 6.41e-08 | 171 |
organ system subdivision | 1.17e-07 | 223 |
pre-chordal neural plate | 1.61e-07 | 61 |