MCL coexpression mm9:639: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{MCL_coexpression_mm9 | {{MCL_coexpression_mm9|coexpression_dpi_cluster_scores_mean=0.0441669186583349,0.109850138689437,0.0779761337795035,0.0508115797451191,0.0312583771038451,0.0304970262599612,-0.00310675587279684,0.41258613653829,0.894964881050527,0.838222139431781,0.29862472049824,0.252131042943501,0.320726579825786,0.296298314830265,-0.00980592495855076,0.038663648199342,-0.0300556890295243,0.126314546506408,0.104374953725253,0.078115889684153,0.0383947422145577,0.0597136956524606,0.0350375608957545,0.0710487217056211,0.0462346956869677,0.00536770299874597,0.0344137912202478,0.066509462854832,-0.0164463230465884,0.0205225966039201,0.0578020527747645,0.0677356883160002,0.0143561647858873,-0.110359146117319,0.0255551955107917,0.0295093650250538,0.0730996195789114,0.794680174413234,0.640914762494155,0.5428258869651,1.12551049418722,0.670816823627356,0.677276835090778,0.100108244570189,0.0975790882131085,0.0838374841558617,0.0233080841540578,-0.0174404998039843,0.0437525495154926,0.0482737230182894,0.0129001687169624,-0.00339960886651504,0.281179716614219,0.261215586060073,0.164644665129679,0.0541708998911682,0.0489623072910265,0.0635248148665461,-0.0471725326946283,-0.0592962226071379,-0.0119346042958712,0.0346847354917642,0.0234800235587118,0.0760557822741661,0.0141592649554882,0.0348918061065778,0.00216840436384924,0.0583248507983521,-0.0464393744574465,-0.0451650194447248,-0.0638629769967842,0.00947616921647769,-0.0121689125157267,-0.0452365104087615,-0.0287776349036077,-0.0237154859069653,0.0133045554769137,0.00521951212975169,0.00823626986396887,-0.0343119557345226,-0.0242300052477594,-0.0215287021867846,0.0349245220564728,0.0735350155341511,0.000209706764626438,-0.000162037530057963,-0.0132505178103701,-0.0172852939139297,0.0189718092896198,0.00310828502299764,0.706396933820096,0.0933512285250426,0.160780043023409,0.0675328434276771,0.0562897309666139,0.0396076557992354,0.0726439802516931,0.0434273331485793,0.0458158565997502,0.0349133372545628,0.0193946359455978,0.0867539158282217,-0.0603600529538626,-0.110359146117319,0.0362463461398236,0.0361997519951151,0.0440840148584297,0.0844083251973657,0.0777463712353754,0.075919008103205,0.0112302327872063,0.010252453084451,0.00506067694369001,0.0593540259499716,0.0495757971042187,0.0132526132187834,0.0283141225969618,0.0548290338928599,0.0221578634064398,0.0358845002763978,0.011132225720389,0.0374411960458938,-0.0490262068443741,-3.72682451146729e-05,0.00717397957128786,-0.0164444076723823,0.416329506787056,0.314872339785947,0.394333905542798,-0.00371524802913717,0.0280321218874679,-0.00792365615914431,-0.00272743362738104,-0.000961666357478673,-0.000857537198642321,0.0168846857481146,0.0382072932765091,0.0442036031400031,0.0355662433050899,-0.0272115142243014,-0.0248886177544824,-0.0173342515531069,-0.0113834628310277,0.0022099198675236,0.0107837415649786,-0.0023255647662555,-0.0149992357880329,0.0068472422105475,-0.0369418503036656,-0.00411933498966839,0.0170408558762211,-0.0113167440183039,0.017686403318357,0.0369828971432529,0.0459372999844192,0.0325277287365914,0.25706406780004,0.257599054006061,0.362056035033955,-0.0483511699510086,-0.0161373242546001,0.0110009419009211,0.00486970817147605,-0.00683335285617335,-0.00246727506140807,0.00610056077916491,-0.0238015116279067,-0.00487430699343258,-0.00217305702488776,0.00851697374537629,0.00605927161675073,0.0109175469029892,0.0195705900368354,0.0218514756710351,0.00307519917993174,-0.0188247702275313,-0.000216844793355853,-0.0210542096018171,-0.0132932471523224,-0.0139798443261233,-0.0173246413995259,-0.0347450960844455,-0.0243380216759835,-0.012524057392035,-0.0106665393356198,-0.0213937160267499,-0.0123516186280485,-0.00182346896389008,-0.0175325216991257,-0.031919970829019,0.0257082738161968,0.0374596712852386,-0.0244297143888243,-0.00651081114259918,0.0171351996851491,0.00596218916304553,0.0143894389345606,-0.00170891595299132,0.0120786266993118,0.0239753351736934,0.0320814397155395,0.047294192884267,0.0369475848327169,-0.0331447387463226,-0.0323055369429098,-0.0659801327469644,-0.0481740211755355,-0.0048105011100957,0.0152961851958471,0.00519673164985346,0.00919131980642985,0.0163979070172826,0.0309766919364885,0.0607546370906033,0.0268029522507266,0.030858681741296,0.0443604390650282,0.0623765345427041,0.0641140537383681,0.00370963546246137,0.00718267046239413,0.0287046850693492,0.0174441728177653,0.0446525652665105,0.0428924049306469,0.0856953942769053,0.0485281070741368,0.0407977306559094,0.0405910214826497,0.0823216867969451,0.0694397259675632,0.0639809270955061,0.0297188529303558,0.124921937932004,-0.0241921580965173,0.0214110319810924,0.00758825052816996,0.0263220137680965,0.0209406432154264,0.0145240293666864,-0.0151215721617638,0.00257487399823994,-0.0204103485152328,0.00430141390077161,0.0258864593941617,-0.0304686853761821,0.0135084919504829,0.021574664309989,0.0197944218602163,0.0189930810614779,0.00134605102748437,0.046948992746409,0.0050741071340997,0.0218242728372288,-0.043653579197959,0.0197283652589095,-0.0159549052579854,0.0292027301517567,0.0258214545066415,0.0140162968718161,-0.00631040842006437,0.0449254404021238,0.0243133929198537,0.00243657907655921,-0.0208076893586514,-0.0661676916448547,0.119270544251313,-0.0162925804749934,0.0302710544857788,0.0270179793242827,0.0485212704849879,0.0339253395369766,0.038288533157694,0.0814851836956709,0.0294447607828408,0.00155649977345314,0.0236159920058306,0.0114885628203224,0.00779509458749214,0.0209150124533655,0.00785194758437239,0.0184147180926952,0.0140754140129205,-0.00356129504580514,0.0185553092812373,0.0116875274954745,0.0305378772921951,0.00414824160911517,0.0155818700319487,0.0282538865177679,0.427496728912882,0.45981523018791,0.387194733587823,-0.0218135193747386,-0.0399918851123157,-0.0161496007579868,-0.00491842828468671,0.0215162245869714,0.0151789797214992,0.0320496975993997,0.00979811216840063,-0.000866169563434037,-0.0012024310162021,0.0839261743176661,-0.0461162358018531,-0.0135395376702629,0.00762542559103233,0.0101117431093437,0.0262948484784961,0.00836439638964633,0.011889792725868,0.00798362226393626,-0.0222454653944589,-0.032331496822549,-0.0201638570385729,0.0781651293708488,-0.00316699171383595,0.0608821201525317,0.0367576611689541,0.0694458932977741,0.0762853243284289,0.0868861835190113,0.102000594054109,0.107683329055886,0.0825760269779587,0.0841222864512026,0.0931380946272746,0.142195528590922,0.143039110534938,0.0554229359832311,-0.0366718331363478,-0.0126371823086846,-0.0545380744292735,0.0363553520504091,0.0356052488871595,0.0154075238335791,0.0558856042340426,-0.0234341185972434,-0.0221231831383978,-0.00943275176630767,0.0068805184916096,-0.00942792920648403,-0.0084012841940274,-0.0332894178907228,-0.00280688037882849,-0.0223677235725058,-0.00104273886610231,-0.0138609755392594,-0.0577560101056741,-0.00552525311696976,-0.0172789747535814,0.00243665518679358,-0.027524985051275,-0.0176544594352759,0.00963335681850573,-0.0277520707339197,-0.0157984707883324,-0.0416564025270298,-0.010382481485745,0.00683858512833467,0.00427922906363717,-0.00717641011529028,0.00407953820799263,-0.0149493542418004,-0.00583745096628182,-0.0143279082724743,-0.00742122342826202,0.00318592962094786,0.00516840407200349,-0.0010563858224177,-0.0108784582173215,0.00223873403552907,-0.0128925946393444,-0.0124906814621161,0.016461058527526,0.00320733264466034,0.00192782750442139,0.0198385357923555,-0.0186454744696388,-0.0206776636408265,-0.0266658327662156,-0.00166448214103033,0.0194607016212267,0.000276781275470019,0.0240927336028366,0.00717003173746531,0.0135858713135388,0.0148791946615005,0.00916287524949983|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0.413854914439209,0.881787943371597,0.835792834727366,0.180026585552633,0.273578499709972,0.342107724764957,0.230286214243433,0,0,0,0.119078361648301,0.0558041721483835,0,0,0.0411126530948397,0,0.0644551523736777,0,0,0,0,0,0,0.0839793170280262,0,0,0,0,0,0,0.86455965894399,0.615459892883158,0.490533640609026,1.19605970885837,0.762026887945864,0.643311751835009,0.0514985917256918,0.0419359757688424,0.073185417993707,0,0,0,0,0,0,0.22705576246071,0.389294454188438,0.125836948423969,0,0.033995335178371,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0317017435824471,0,0.68815506582299,0,0,0,0,0,0.0397519380874063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.427715163864743,0.300173318036138,0.423559264412865,0,0,0,0,0,0,0,0.00508484160320079,0.0509235292940968,0,0,0,0,0,0,0.0285860945550467,0,0,0,0,0,0,0,0,0,0,0,0.231013950740173,0.307365864513145,0.383962049647022,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0774164737207147,0,0,0,0,0.0691813633419548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120939615821127,0,0,0,0.0564111250741226,0,0,0,0,0,0,0,0,0.0254340553719351,0,0,0,0,0,0,0,0,0,0,0.431329067459534,0.428040377850264,0.424620276916781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0417740847988257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|gostat_on_MCL_coexpression=GO:0008538;proteasome activator activity;0.00542317164695645;19188!GO:0008537;proteasome activator complex;0.00542317164695645;19188!GO:0019884;antigen processing and presentation of exogenous antigen;0.0276880692576502;19188!|ontology_enrichment_celltype=CL:0000838!3.62e-19!12;CL:0000988!4.32e-19!32;CL:0002032!4.32e-19!32;CL:0000037!4.32e-19!32;CL:0000566!4.32e-19!32;CL:0000837!4.32e-19!32;CL:0000791!4.65e-18!9;CL:0000789!4.65e-18!9;CL:0002420!4.65e-18!9;CL:0002419!4.65e-18!9;CL:0000790!4.65e-18!9;CL:0000542!1.71e-17!13;CL:0000051!1.71e-17!13;CL:0000084!1.82e-17!11;CL:0000827!1.82e-17!11;CL:0000624!2.09e-16!8;CL:0002242!9.82e-14!16;CL:0002320!1.97e-13!46;CL:0000134!1.97e-13!46;CL:0000738!8.89e-13!17;CL:0002087!8.89e-13!17;CL:0000893!1.07e-12!6;CL:0002489!1.07e-12!6;CL:0000898!1.07e-12!6;CL:0000809!1.07e-12!6;CL:0000810!1.07e-12!6;CL:0000895!1.07e-12!6;CL:0000808!1.07e-12!6;CL:0000894!1.07e-12!6;CL:0000806!1.07e-12!6;CL:0000807!1.07e-12!6;CL:0000805!1.07e-12!6;CL:0002425!1.07e-12!6;CL:0002436!1.07e-12!6;CL:0002427!1.07e-12!6;CL:0002428!1.07e-12!6;CL:0002429!1.07e-12!6;CL:0002433!1.07e-12!6;CL:0002431!1.07e-12!6;CL:0002432!1.07e-12!6;CL:0000034!2.34e-12!97;CL:0000219!7.03e-12!54;CL:0002031!4.08e-11!25;CL:0000355!3.65e-10!9;CL:0000723!3.83e-10!91;CL:0000048!3.83e-10!91;CL:0002371!5.18e-07!118|ontology_enrichment_disease=DOID:0060100!1.06e-07!3;DOID:4045!1.06e-07!3|ontology_enrichment_uberon=UBERON:0002384!1.97e-13!46;UBERON:0001134!3.65e-10!9;UBERON:0002036!3.65e-10!9;UBERON:0002385!3.65e-10!9;UBERON:0000486!3.65e-10!9;UBERON:0007503!3.65e-10!9;UBERON:0001015!3.65e-10!9;UBERON:0002329!3.65e-10!9;UBERON:0003082!3.65e-10!9;UBERON:0003059!3.65e-10!9;UBERON:0007282!3.65e-10!9;UBERON:0004290!3.65e-10!9;UBERON:0009618!3.65e-10!9;UBERON:0000383!4.90e-09!10;UBERON:0007524!4.10e-08!11;UBERON:0003077!4.10e-08!11;UBERON:0007285!4.10e-08!11|tfbs_overrepresentation_for_novel_motifs=0.29262,0.0513547,0.269904,0.329881,0.176699,0.342839,0.425757,0.106126,0.112618,0.660314,0.385334,1.06556,0.106288,0.437133,0.555819,0,0.619876,0.170475,0.318616,0.0448402,0.670854,0.281622,0.436294,0.520732,0.276437,0.4628,0.0908349,0.361771,0.611503,0.0650265,0.349031,0.717576,0.168723,0.570676,0.19035,0.075793,0.161521,0.411296,0.873942,0.391645,0.992655,0.353696,0.255102,0.191571,0.812209,0.319944,0.543674,0.376103,0.660525,0.215702,0.603113,0.488021,0.0612063,0.855661,0.87275,0.443782,0.223087,0.40287,0.60268,0.441884,0.698157,1.24284,0.120887,0.592318,0.45416,0.631188,1.00675,1.3527,0.693631,1.20659,0.706068,1.18624,0.0307733,0.905636,0.0810502,0.54852,0.570456,0.532872,0.681539,0.242107,0.357936,0.636582,0.495545,0.101814,0.792744,0.00855221,0.0106044,1.29984,0.548334,1.51408,1.07554,0.797601,0.730003,0.535058,0.141946,0.805383,0.694736,0.732731,0.543917,0.197581,0.486605,0.717305,0.838603,0.603683,1.46677,0.353298,0.660145,0.372438,0.688705,0.240055,0.286453,0.840348,0.243062,0.390066,1.0825,0.512539,0.170188,0.333247,0.621127,0.158673,0.910937,0.572279,0.464505,0.532013,1.13603,1.63906,0.433317,0.723425,1.00525,0.183744,0.821997,0.323373,0.976125,0.456508,1.10385,9.76511,0.300001,1.66879,1.05527,1.88134,1.48237,1.01139,0.475785,0.727736,0.596462,0.354106,0.546641,1.84176,0.302077,0.527071,0.0664621,0.0240729,1.99431,0.415832,0.455644,0.93735,0.488969,0.199652,0.790184,0.299755,1.06466,0.791909,0.685546,0.284483,0.593295,0.448733,0.939822,1.06237,0.148813|tfbs_overrepresentation_jaspar=MA0003.1;0.156602,MA0004.1;0.330313,MA0006.1;0.186435,MA0007.1;0.316976,MA0009.1;0.743257,MA0014.1;0.144697,MA0017.1;0.207884,MA0019.1;0.567591,MA0024.1;0.70077,MA0025.1;0.971686,MA0027.1;2.37948,MA0028.1;0.567414,MA0029.1;0.679737,MA0030.1;0.686088,MA0031.1;0.651724,MA0038.1;0.462726,MA0040.1;0.755433,MA0041.1;1.34187,MA0042.1;0.703657,MA0043.1;0.837621,MA0046.1;0.778239,MA0048.1;0.199479,MA0050.1;0.365212,MA0051.1;0.471092,MA0052.1;0.76328,MA0055.1;0.0098576,MA0056.1;0,MA0057.1;0.181039,MA0058.1;0.246908,MA0059.1;0.257372,MA0060.1;0.789184,MA0061.1;0.451296,MA0063.1;0,MA0066.1;0.452472,MA0067.1;1.08124,MA0068.1;0.418079,MA0069.1;0.76361,MA0070.1;0.75417,MA0071.1;0.364454,MA0072.1;0.745922,MA0073.1;0.0672071,MA0074.1;0.419185,MA0076.1;0.635923,MA0077.1;0.724865,MA0078.1;0.502121,MA0081.1;0.760108,MA0083.1;0.836845,MA0084.1;1.4063,MA0087.1;0.794721,MA0088.1;0.0293443,MA0089.1;0,MA0090.1;0.299987,MA0091.1;0.906056,MA0092.1;0.300264,MA0093.1;0.20148,MA0095.1;0,MA0098.1;0,MA0100.1;0.408523,MA0101.1;0.73212,MA0103.1;0.216742,MA0105.1;0.26272,MA0106.1;0.509454,MA0107.1;0.607721,MA0108.2;0.589413,MA0109.1;0,MA0111.1;0.312463,MA0113.1;1.21288,MA0114.1;0.145642,MA0115.1;0.84036,MA0116.1;0.186271,MA0117.1;0.808813,MA0119.1;0.265536,MA0122.1;0.828211,MA0124.1;1.02871,MA0125.1;0.955734,MA0130.1;0,MA0131.1;0.563262,MA0132.1;0,MA0133.1;0,MA0135.1;0.873285,MA0136.1;1.95245,MA0139.1;0.103495,MA0140.1;0.408417,MA0141.1;0.658164,MA0142.1;0.63775,MA0143.1;0.49828,MA0144.1;0.147954,MA0145.1;0.57264,MA0146.1;0.0833862,MA0147.1;0.157258,MA0148.1;0.344843,MA0149.1;0.269772,MA0062.2;0.573094,MA0035.2;0.412747,MA0039.2;0.499196,MA0138.2;0.555696,MA0002.2;0.343346,MA0137.2;0.230686,MA0104.2;0.11535,MA0047.2;0.46201,MA0112.2;0.313687,MA0065.2;0.314773,MA0150.1;0.849777,MA0151.1;0,MA0152.1;0.46211,MA0153.1;0.889592,MA0154.1;0.195907,MA0155.1;0.354827,MA0156.1;1.851,MA0157.1;0.606944,MA0158.1;0,MA0159.1;0.165031,MA0160.1;0.347545,MA0161.1;0,MA0162.1;0.0355033,MA0163.1;0.0916052,MA0164.1;1.95358,MA0080.2;0.609443,MA0018.2;0.446948,MA0099.2;1.35508,MA0079.2;0.00532751,MA0102.2;1.45844,MA0258.1;0.421574,MA0259.1;0.14914,MA0442.1;0}} | ||
|coexpression_dpi_cluster_scores_mean=0.0441669186583349,0.109850138689437,0.0779761337795035,0.0508115797451191,0.0312583771038451,0.0304970262599612,-0.00310675587279684,0.41258613653829,0.894964881050527,0.838222139431781,0.29862472049824,0.252131042943501,0.320726579825786,0.296298314830265,-0.00980592495855076,0.038663648199342,-0.0300556890295243,0.126314546506408,0.104374953725253,0.078115889684153,0.0383947422145577,0.0597136956524606,0.0350375608957545,0.0710487217056211,0.0462346956869677,0.00536770299874597,0.0344137912202478,0.066509462854832,-0.0164463230465884,0.0205225966039201,0.0578020527747645,0.0677356883160002,0.0143561647858873,-0.110359146117319,0.0255551955107917,0.0295093650250538,0.0730996195789114,0.794680174413234,0.640914762494155,0.5428258869651,1.12551049418722,0.670816823627356,0.677276835090778,0.100108244570189,0.0975790882131085,0.0838374841558617,0.0233080841540578,-0.0174404998039843,0.0437525495154926,0.0482737230182894,0.0129001687169624,-0.00339960886651504,0.281179716614219,0.261215586060073,0.164644665129679,0.0541708998911682,0.0489623072910265,0.0635248148665461,-0.0471725326946283,-0.0592962226071379,-0.0119346042958712,0.0346847354917642,0.0234800235587118,0.0760557822741661,0.0141592649554882,0.0348918061065778,0.00216840436384924,0.0583248507983521,-0.0464393744574465,-0.0451650194447248,-0.0638629769967842,0.00947616921647769,-0.0121689125157267,-0.0452365104087615,-0.0287776349036077,-0.0237154859069653,0.0133045554769137,0.00521951212975169,0.00823626986396887,-0.0343119557345226,-0.0242300052477594,-0.0215287021867846,0.0349245220564728,0.0735350155341511,0.000209706764626438,-0.000162037530057963,-0.0132505178103701,-0.0172852939139297,0.0189718092896198,0.00310828502299764,0.706396933820096,0.0933512285250426,0.160780043023409,0.0675328434276771,0.0562897309666139,0.0396076557992354,0.0726439802516931,0.0434273331485793,0.0458158565997502,0.0349133372545628,0.0193946359455978,0.0867539158282217,-0.0603600529538626,-0.110359146117319,0.0362463461398236,0.0361997519951151,0.0440840148584297,0.0844083251973657,0.0777463712353754,0.075919008103205,0.0112302327872063,0.010252453084451,0.00506067694369001,0.0593540259499716,0.0495757971042187,0.0132526132187834,0.0283141225969618,0.0548290338928599,0.0221578634064398,0.0358845002763978,0.011132225720389,0.0374411960458938,-0.0490262068443741,-3.72682451146729e-05,0.00717397957128786,-0.0164444076723823,0.416329506787056,0.314872339785947,0.394333905542798,-0.00371524802913717,0.0280321218874679,-0.00792365615914431,-0.00272743362738104,-0.000961666357478673,-0.000857537198642321,0.0168846857481146,0.0382072932765091,0.0442036031400031,0.0355662433050899,-0.0272115142243014,-0.0248886177544824,-0.0173342515531069,-0.0113834628310277,0.0022099198675236,0.0107837415649786,-0.0023255647662555,-0.0149992357880329,0.0068472422105475,-0.0369418503036656,-0.00411933498966839,0.0170408558762211,-0.0113167440183039,0.017686403318357,0.0369828971432529,0.0459372999844192,0.0325277287365914,0.25706406780004,0.257599054006061,0.362056035033955,-0.0483511699510086,-0.0161373242546001,0.0110009419009211,0.00486970817147605,-0.00683335285617335,-0.00246727506140807,0.00610056077916491,-0.0238015116279067,-0.00487430699343258,-0.00217305702488776,0.00851697374537629,0.00605927161675073,0.0109175469029892,0.0195705900368354,0.0218514756710351,0.00307519917993174,-0.0188247702275313,-0.000216844793355853,-0.0210542096018171,-0.0132932471523224,-0.0139798443261233,-0.0173246413995259,-0.0347450960844455,-0.0243380216759835,-0.012524057392035,-0.0106665393356198,-0.0213937160267499,-0.0123516186280485,-0.00182346896389008,-0.0175325216991257,-0.031919970829019,0.0257082738161968,0.0374596712852386,-0.0244297143888243,-0.00651081114259918,0.0171351996851491,0.00596218916304553,0.0143894389345606,-0.00170891595299132,0.0120786266993118,0.0239753351736934,0.0320814397155395,0.047294192884267,0.0369475848327169,-0.0331447387463226,-0.0323055369429098,-0.0659801327469644,-0.0481740211755355,-0.0048105011100957,0.0152961851958471,0.00519673164985346,0.00919131980642985,0.0163979070172826,0.0309766919364885,0.0607546370906033,0.0268029522507266,0.030858681741296,0.0443604390650282,0.0623765345427041,0.0641140537383681,0.00370963546246137,0.00718267046239413,0.0287046850693492,0.0174441728177653,0.0446525652665105,0.0428924049306469,0.0856953942769053,0.0485281070741368,0.0407977306559094,0.0405910214826497,0.0823216867969451,0.0694397259675632,0.0639809270955061,0.0297188529303558,0.124921937932004,-0.0241921580965173,0.0214110319810924,0.00758825052816996,0.0263220137680965,0.0209406432154264,0.0145240293666864,-0.0151215721617638,0.00257487399823994,-0.0204103485152328,0.00430141390077161,0.0258864593941617,-0.0304686853761821,0.0135084919504829,0.021574664309989,0.0197944218602163,0.0189930810614779,0.00134605102748437,0.046948992746409,0.0050741071340997,0.0218242728372288,-0.043653579197959,0.0197283652589095,-0.0159549052579854,0.0292027301517567,0.0258214545066415,0.0140162968718161,-0.00631040842006437,0.0449254404021238,0.0243133929198537,0.00243657907655921,-0.0208076893586514,-0.0661676916448547,0.119270544251313,-0.0162925804749934,0.0302710544857788,0.0270179793242827,0.0485212704849879,0.0339253395369766,0.038288533157694,0.0814851836956709,0.0294447607828408,0.00155649977345314,0.0236159920058306,0.0114885628203224,0.00779509458749214,0.0209150124533655,0.00785194758437239,0.0184147180926952,0.0140754140129205,-0.00356129504580514,0.0185553092812373,0.0116875274954745,0.0305378772921951,0.00414824160911517,0.0155818700319487,0.0282538865177679,0.427496728912882,0.45981523018791,0.387194733587823,-0.0218135193747386,-0.0399918851123157,-0.0161496007579868,-0.00491842828468671,0.0215162245869714,0.0151789797214992,0.0320496975993997,0.00979811216840063,-0.000866169563434037,-0.0012024310162021,0.0839261743176661,-0.0461162358018531,-0.0135395376702629,0.00762542559103233,0.0101117431093437,0.0262948484784961,0.00836439638964633,0.011889792725868,0.00798362226393626,-0.0222454653944589,-0.032331496822549,-0.0201638570385729,0.0781651293708488,-0.00316699171383595,0.0608821201525317,0.0367576611689541,0.0694458932977741,0.0762853243284289,0.0868861835190113,0.102000594054109,0.107683329055886,0.0825760269779587,0.0841222864512026,0.0931380946272746,0.142195528590922,0.143039110534938,0.0554229359832311,-0.0366718331363478,-0.0126371823086846,-0.0545380744292735,0.0363553520504091,0.0356052488871595,0.0154075238335791,0.0558856042340426,-0.0234341185972434,-0.0221231831383978,-0.00943275176630767,0.0068805184916096,-0.00942792920648403,-0.0084012841940274,-0.0332894178907228,-0.00280688037882849,-0.0223677235725058,-0.00104273886610231,-0.0138609755392594,-0.0577560101056741,-0.00552525311696976,-0.0172789747535814,0.00243665518679358,-0.027524985051275,-0.0176544594352759,0.00963335681850573,-0.0277520707339197,-0.0157984707883324,-0.0416564025270298,-0.010382481485745,0.00683858512833467,0.00427922906363717,-0.00717641011529028,0.00407953820799263,-0.0149493542418004,-0.00583745096628182,-0.0143279082724743,-0.00742122342826202,0.00318592962094786,0.00516840407200349,-0.0010563858224177,-0.0108784582173215,0.00223873403552907,-0.0128925946393444,-0.0124906814621161,0.016461058527526,0.00320733264466034,0.00192782750442139,0.0198385357923555,-0.0186454744696388,-0.0206776636408265,-0.0266658327662156,-0.00166448214103033,0.0194607016212267,0.000276781275470019,0.0240927336028366,0.00717003173746531,0.0135858713135388,0.0148791946615005,0.00916287524949983 | |||
| | |||
}} |
Latest revision as of 15:38, 17 September 2013
Phase1 CAGE Peaks
Short description | |
---|---|
Mm9::chr10:61969312..61969341,+ | p@chr10:61969312..61969341 + |
Mm9::chr10:89208517..89208523,- | p@chr10:89208517..89208523 - |
Mm9::chr10:89208554..89208568,- | p@chr10:89208554..89208568 - |
Mm9::chr11:103558635..103558654,+ | p2@ENSMUST00000129780 p2@ENSMUST00000154471 p2@uc007lvp.1 p2@uc011yfx.1 |
Mm9::chr11:78059245..78059323,+ | p2@Sdf2 |
Mm9::chr14:56210316..56210343,- | p6@Psme2 |
Mm9::chr1:58769066..58769089,- | p@chr1:58769066..58769089 - |
Mm9::chr1:58769240..58769278,+ | p@chr1:58769240..58769278 + |
Mm9::chr1:58783936..58783956,- | p@chr1:58783936..58783956 - |
Mm9::chr2:160472300..160472306,- | p@chr2:160472300..160472306 - |
Mm9::chr7:148127785..148127855,+ | p2@Athl1 |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
GO ID | GO name | FDR corrected p-value |
---|---|---|
GO:0008538 | proteasome activator activity | 0.00542317164695645 |
GO:0008537 | proteasome activator complex | 0.00542317164695645 |
GO:0019884 | antigen processing and presentation of exogenous antigen | 0.0276880692576502 |
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>
Ontology term | p-value | n |
---|---|---|
connective tissue | 1.97e-13 | 46 |
skeletal muscle tissue | 3.65e-10 | 9 |
striated muscle tissue | 3.65e-10 | 9 |
muscle tissue | 3.65e-10 | 9 |
multilaminar epithelium | 3.65e-10 | 9 |
epithelial vesicle | 3.65e-10 | 9 |
musculature | 3.65e-10 | 9 |
somite | 3.65e-10 | 9 |
myotome | 3.65e-10 | 9 |
presomitic mesoderm | 3.65e-10 | 9 |
presumptive segmental plate | 3.65e-10 | 9 |
dermomyotome | 3.65e-10 | 9 |
trunk paraxial mesoderm | 3.65e-10 | 9 |
musculature of body | 4.90e-09 | 10 |
dense mesenchyme tissue | 4.10e-08 | 11 |
paraxial mesoderm | 4.10e-08 | 11 |
presumptive paraxial mesoderm | 4.10e-08 | 11 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system cancer | 1.06e-07 | 3 |
muscle cancer | 1.06e-07 | 3 |
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
MA0003.1 | 0.156602 |
MA0004.1 | 0.330313 |
MA0006.1 | 0.186435 |
MA0007.1 | 0.316976 |
MA0009.1 | 0.743257 |
MA0014.1 | 0.144697 |
MA0017.1 | 0.207884 |
MA0019.1 | 0.567591 |
MA0024.1 | 0.70077 |
MA0025.1 | 0.971686 |
MA0027.1 | 2.37948 |
MA0028.1 | 0.567414 |
MA0029.1 | 0.679737 |
MA0030.1 | 0.686088 |
MA0031.1 | 0.651724 |
MA0038.1 | 0.462726 |
MA0040.1 | 0.755433 |
MA0041.1 | 1.34187 |
MA0042.1 | 0.703657 |
MA0043.1 | 0.837621 |
MA0046.1 | 0.778239 |
MA0048.1 | 0.199479 |
MA0050.1 | 0.365212 |
MA0051.1 | 0.471092 |
MA0052.1 | 0.76328 |
MA0055.1 | 0.0098576 |
MA0056.1 | 0 |
MA0057.1 | 0.181039 |
MA0058.1 | 0.246908 |
MA0059.1 | 0.257372 |
MA0060.1 | 0.789184 |
MA0061.1 | 0.451296 |
MA0063.1 | 0 |
MA0066.1 | 0.452472 |
MA0067.1 | 1.08124 |
MA0068.1 | 0.418079 |
MA0069.1 | 0.76361 |
MA0070.1 | 0.75417 |
MA0071.1 | 0.364454 |
MA0072.1 | 0.745922 |
MA0073.1 | 0.0672071 |
MA0074.1 | 0.419185 |
MA0076.1 | 0.635923 |
MA0077.1 | 0.724865 |
MA0078.1 | 0.502121 |
MA0081.1 | 0.760108 |
MA0083.1 | 0.836845 |
MA0084.1 | 1.4063 |
MA0087.1 | 0.794721 |
MA0088.1 | 0.0293443 |
MA0089.1 | 0 |
MA0090.1 | 0.299987 |
MA0091.1 | 0.906056 |
MA0092.1 | 0.300264 |
MA0093.1 | 0.20148 |
MA0095.1 | 0 |
MA0098.1 | 0 |
MA0100.1 | 0.408523 |
MA0101.1 | 0.73212 |
MA0103.1 | 0.216742 |
MA0105.1 | 0.26272 |
MA0106.1 | 0.509454 |
MA0107.1 | 0.607721 |
MA0108.2 | 0.589413 |
MA0109.1 | 0 |
MA0111.1 | 0.312463 |
MA0113.1 | 1.21288 |
MA0114.1 | 0.145642 |
MA0115.1 | 0.84036 |
MA0116.1 | 0.186271 |
MA0117.1 | 0.808813 |
MA0119.1 | 0.265536 |
MA0122.1 | 0.828211 |
MA0124.1 | 1.02871 |
MA0125.1 | 0.955734 |
MA0130.1 | 0 |
MA0131.1 | 0.563262 |
MA0132.1 | 0 |
MA0133.1 | 0 |
MA0135.1 | 0.873285 |
MA0136.1 | 1.95245 |
MA0139.1 | 0.103495 |
MA0140.1 | 0.408417 |
MA0141.1 | 0.658164 |
MA0142.1 | 0.63775 |
MA0143.1 | 0.49828 |
MA0144.1 | 0.147954 |
MA0145.1 | 0.57264 |
MA0146.1 | 0.0833862 |
MA0147.1 | 0.157258 |
MA0148.1 | 0.344843 |
MA0149.1 | 0.269772 |
MA0062.2 | 0.573094 |
MA0035.2 | 0.412747 |
MA0039.2 | 0.499196 |
MA0138.2 | 0.555696 |
MA0002.2 | 0.343346 |
MA0137.2 | 0.230686 |
MA0104.2 | 0.11535 |
MA0047.2 | 0.46201 |
MA0112.2 | 0.313687 |
MA0065.2 | 0.314773 |
MA0150.1 | 0.849777 |
MA0151.1 | 0 |
MA0152.1 | 0.46211 |
MA0153.1 | 0.889592 |
MA0154.1 | 0.195907 |
MA0155.1 | 0.354827 |
MA0156.1 | 1.851 |
MA0157.1 | 0.606944 |
MA0158.1 | 0 |
MA0159.1 | 0.165031 |
MA0160.1 | 0.347545 |
MA0161.1 | 0 |
MA0162.1 | 0.0355033 |
MA0163.1 | 0.0916052 |
MA0164.1 | 1.95358 |
MA0080.2 | 0.609443 |
MA0018.2 | 0.446948 |
MA0099.2 | 1.35508 |
MA0079.2 | 0.00532751 |
MA0102.2 | 1.45844 |
MA0258.1 | 0.421574 |
MA0259.1 | 0.14914 |
MA0442.1 | 0 |