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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0030336;negative regulation of cell migration;0.0337967027183803;17831!GO:0007339;binding of sperm to zona pellucida;0.0337967027183803;215384!GO:0051271;negative regulation of cell motility;0.0337967027183803;17831!GO:0035036;sperm-egg recognition;0.0337967027183803;215384!GO:0009988;cell-cell recognition;0.0337967027183803;215384!GO:0040013;negative regulation of locomotion;0.0337967027183803;17831!}}
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.0773548534010084,0.278483662180697,0.270574546258304,0.341404378058948,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335643082588139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.249855990247831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|gostat_on_MCL_coexpression=GO:0030336;negative regulation of cell migration;0.0337967027183803;17831!GO:0007339;binding of sperm to zona pellucida;0.0337967027183803;215384!GO:0051271;negative regulation of cell motility;0.0337967027183803;17831!GO:0035036;sperm-egg recognition;0.0337967027183803;215384!GO:0009988;cell-cell recognition;0.0337967027183803;215384!GO:0040013;negative regulation of locomotion;0.0337967027183803;17831!|ontology_enrichment_celltype=CL:0000627!8.72e-11!3;CL:0000682!8.72e-11!3;CL:0000239!2.21e-09!6;CL:0000677!2.21e-09!6;CL:0000212!2.21e-09!6;CL:0000584!2.21e-09!6;CL:0000075!4.76e-08!7|ontology_enrichment_disease=|ontology_enrichment_uberon=UBERON:0000160!7.50e-40!31;UBERON:0005409!9.17e-28!47;UBERON:0000344!1.17e-21!15;UBERON:0001242!2.93e-16!13;UBERON:0000060!2.93e-16!13;UBERON:0001262!2.93e-16!13;UBERON:0004786!2.93e-16!13;UBERON:0002108!1.43e-14!4;UBERON:0004923!7.40e-13!24;UBERON:0000331!2.16e-11!3;UBERON:0002116!2.16e-11!3;UBERON:0001204!2.16e-11!3;UBERON:0001168!2.16e-11!3;UBERON:0001007!3.37e-11!116;UBERON:0001555!3.37e-11!116;UBERON:0007026!3.37e-11!116;UBERON:0004119!6.20e-11!118;UBERON:0000925!6.20e-11!118;UBERON:0006595!6.20e-11!118;UBERON:0004921!4.71e-09!114;UBERON:0001962!9.86e-08!2;UBERON:0001961!9.86e-08!2;UBERON:0001744!9.86e-08!2|tfbs_overrepresentation_for_novel_motifs=0.224432,0.213574,0.194973,0.275278,2.33989,0.0870341,0.134128,1.88391,0.105359,0.0244587,0.110217,0.400509,0.0322858,0.141157,1.11647,0,0.268829,0.407946,0.320534,1.1594,1.00301,0.102493,0.140634,0.0883885,0.447985,0.476423,0.983428,0.0971006,0.127587,0.317571,0.0902787,0.914618,0.208387,0.852788,0.103182,0.000445602,0.0163998,0.395367,0.546738,0.0443679,0.0865113,0.309235,0.898158,0.479427,0.0622312,0.0754546,0.212558,0.34211,1.38084,0.0320471,0.711629,0.174075,0.457712,0.462148,0.477006,0.446098,4.10525,0.382447,0.443457,0.14413,0.330215,0.180052,0.248699,0.248044,0.15191,0.277492,0.596353,0.920398,0.326579,0.781435,0.0459805,0.871817,0.00848844,0.505848,0.00296685,0.375237,0.243174,0.204903,0.316915,1.45066,0.102709,0.28165,0.179134,0.0881686,0.408287,0.00198998,0.00927928,0.0944002,0.215887,1.07627,0.659258,0.412394,0.356069,0.444653,0.0120375,0.0481817,0.566539,0.358304,0.212731,0.0262752,0.194195,0.345703,0.44741,0.25656,0.255799,0.0925422,0.299999,0.336675,0.0430499,0.0407056,0.472108,0.448913,1.45676,0.112926,0.665677,0.0851703,1.63453,0.0821019,0.269784,0.61238,0.510527,0.65845,0.158574,0.204297,0.715313,0.319766,0.138785,0.35069,0.594996,0.0965026,0.433157,0.56298,0.568676,0.466342,1.63969,0.277538,0.234265,0.0934347,0.640623,1.43657,1.04548,0.600569,2.1904,0.354213,0.25114,0.0929729,0.214675,1.39749,0.874916,0.0909165,0.975156,0.00501865,0.46348,0.287349,0.464961,0.533955,0.518839,1.17873,0.481842,0.0658133,0.649247,0.407582,2.34937,0.213736,0.248774,0.45395,0.375337,0.126498,0.0339396|tfbs_overrepresentation_jaspar=MA0003.1;9.51468e-06,MA0004.1;0.275884,MA0006.1;0.244694,MA0007.1;0.074003,MA0009.1;0.961172,MA0014.1;0.000955702,MA0017.1;0.535828,MA0019.1;0.229805,MA0024.1;0.332319,MA0025.1;0.564682,MA0027.1;1.93116,MA0028.1;0.0253985,MA0029.1;0.315482,MA0030.1;0.320542,MA0031.1;0.293406,MA0038.1;0.157421,MA0040.1;0.377038,MA0041.1;0.0501054,MA0042.1;0.173505,MA0043.1;0.446565,MA0046.1;0.396073,MA0048.1;0.0692225,MA0050.1;0.0989764,MA0051.1;0.162867,MA0052.1;0.383564,MA0055.1;0.0418224,MA0056.1;0,MA0057.1;0.214395,MA0058.1;0.166493,MA0059.1;0.179276,MA0060.1;0.00889506,MA0061.1;0.0628971,MA0063.1;0,MA0066.1;0.898799,MA0067.1;0.664516,MA0068.1;0.000840659,MA0069.1;1.76904,MA0070.1;0.981051,MA0071.1;0.0985618,MA0072.1;0.369163,MA0073.1;1.74489e-10,MA0074.1;0.407556,MA0076.1;0.0347575,MA0077.1;0.351866,MA0078.1;0.540438,MA0081.1;0.0557321,MA0083.1;0.445897,MA0084.1;0.971934,MA0087.1;0.409958,MA0088.1;0.298607,MA0089.1;0,MA0090.1;0.234247,MA0091.1;4.12536,MA0092.1;1.82078,MA0093.1;0.114799,MA0095.1;0,MA0098.1;0,MA0100.1;0.781912,MA0101.1;0.18882,MA0103.1;1.73908,MA0105.1;1.10292,MA0106.1;0.188607,MA0107.1;0.298859,MA0108.2;0.687911,MA0109.1;0,MA0111.1;0.251142,MA0113.1;0.170658,MA0114.1;1.97725,MA0115.1;0.448923,MA0116.1;1.09275,MA0117.1;0.42191,MA0119.1;4.69601,MA0122.1;1.11729,MA0124.1;0.616327,MA0125.1;0.55037,MA0130.1;0,MA0131.1;0.226654,MA0132.1;0,MA0133.1;0,MA0135.1;0.477472,MA0136.1;0.436338,MA0139.1;0.0907756,MA0140.1;0.390942,MA0141.1;0.346747,MA0142.1;0.282551,MA0143.1;0.180984,MA0144.1;0.167901,MA0145.1;0.128216,MA0146.1;0.00587209,MA0147.1;0.185738,MA0148.1;0.296488,MA0149.1;0.194806,MA0062.2;0.00279184,MA0035.2;0.397603,MA0039.2;0.000105729,MA0138.2;0.221177,MA0002.2;1.48616,MA0137.2;0.147294,MA0104.2;0.109863,MA0047.2;2.12116,MA0112.2;0.128205,MA0065.2;0.682501,MA0150.1;0.929689,MA0151.1;0,MA0152.1;0.475315,MA0153.1;1.2318,MA0154.1;0.243616,MA0155.1;0.0142364,MA0156.1;0.323742,MA0157.1;0.718286,MA0158.1;0,MA0159.1;0.201016,MA0160.1;0.623941,MA0161.1;0,MA0162.1;0.000265733,MA0163.1;0.00271648,MA0164.1;0.436868,MA0080.2;0.300456,MA0018.2;0.451116,MA0099.2;0.216863,MA0079.2;1.22184e-10,MA0102.2;1.0223,MA0258.1;0.145079,MA0259.1;0.064381,MA0442.1;0}}

Latest revision as of 15:00, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr17:31266547..31266564,-p1@Tff3
Mm9::chr1:14921327..14921333,-p@chr1:14921327..14921333
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Mm9::chr1:72247892..72247896,-p@chr1:72247892..72247896
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Mm9::chr6:48417827..48417837,+p@chr6:48417827..48417837
+
Mm9::chr7:134194040..134194053,-p@chr7:134194040..134194053
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Mm9::chr7:148877097..148877108,+p@chr7:148877097..148877108
+
Mm9::chr7:148877193..148877223,+p@chr7:148877193..148877223
+
Mm9::chr7:148880509..148880519,+p@chr7:148880509..148880519
+
Mm9::chr7:148882547..148882558,+p@chr7:148882547..148882558
+
Mm9::chr7:148930603..148930616,+p@chr7:148930603..148930616
+
Mm9::chr7:28860196..28860207,+p@chr7:28860196..28860207
+
Mm9::chr7:28860223..28860234,+p@chr7:28860223..28860234
+
Mm9::chr7:28860243..28860261,+p@chr7:28860243..28860261
+
Mm9::chr7:28860314..28860321,+p@chr7:28860314..28860321
+
Mm9::chr7:28860330..28860347,+p@chr7:28860330..28860347
+
Mm9::chr7:28860352..28860369,+p@chr7:28860352..28860369
+
Mm9::chr7:28869936..28869969,+p@chr7:28869936..28869969
+
Mm9::chr7:28870210..28870231,+p@chr7:28870210..28870231
+
Mm9::chr7:28870432..28870443,+p@chr7:28870432..28870443
+
Mm9::chr7:28871352..28871361,+p@chr7:28871352..28871361
+
Mm9::chr7:28871489..28871499,+p@chr7:28871489..28871499
+
Mm9::chr7:28871544..28871562,+p@chr7:28871544..28871562
+
Mm9::chr7:28874831..28874846,+p@chr7:28874831..28874846
+
Mm9::chr7:28888954..28888965,+p@chr7:28888954..28888965
+
Mm9::chr7:28889792..28889799,+p@chr7:28889792..28889799
+
Mm9::chr7:28902402..28902411,+p@chr7:28902402..28902411
+
Mm9::chr7:28902451..28902458,+p@chr7:28902451..28902458
+
Mm9::chr7:28905526..28905568,+p@chr7:28905526..28905568
+
Mm9::chr7:38969538..38969543,-p@chr7:38969538..38969543
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Mm9::chr8:107232169..107232172,-p@chr8:107232169..107232172
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Mm9::chr8:95678347..95678351,-p@chr8:95678347..95678351
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0030336negative regulation of cell migration0.0337967027183803
GO:0007339binding of sperm to zona pellucida0.0337967027183803
GO:0051271negative regulation of cell motility0.0337967027183803
GO:0035036sperm-egg recognition0.0337967027183803
GO:0009988cell-cell recognition0.0337967027183803
GO:0040013negative regulation of locomotion0.0337967027183803



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
transporting cell8.72e-113
M cell of gut8.72e-113
brush border epithelial cell2.21e-096
gut absorptive cell2.21e-096
absorptive cell2.21e-096
enterocyte2.21e-096
columnar/cuboidal epithelial cell4.76e-087


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.19.51468e-06
MA0004.10.275884
MA0006.10.244694
MA0007.10.074003
MA0009.10.961172
MA0014.10.000955702
MA0017.10.535828
MA0019.10.229805
MA0024.10.332319
MA0025.10.564682
MA0027.11.93116
MA0028.10.0253985
MA0029.10.315482
MA0030.10.320542
MA0031.10.293406
MA0038.10.157421
MA0040.10.377038
MA0041.10.0501054
MA0042.10.173505
MA0043.10.446565
MA0046.10.396073
MA0048.10.0692225
MA0050.10.0989764
MA0051.10.162867
MA0052.10.383564
MA0055.10.0418224
MA0056.10
MA0057.10.214395
MA0058.10.166493
MA0059.10.179276
MA0060.10.00889506
MA0061.10.0628971
MA0063.10
MA0066.10.898799
MA0067.10.664516
MA0068.10.000840659
MA0069.11.76904
MA0070.10.981051
MA0071.10.0985618
MA0072.10.369163
MA0073.11.74489e-10
MA0074.10.407556
MA0076.10.0347575
MA0077.10.351866
MA0078.10.540438
MA0081.10.0557321
MA0083.10.445897
MA0084.10.971934
MA0087.10.409958
MA0088.10.298607
MA0089.10
MA0090.10.234247
MA0091.14.12536
MA0092.11.82078
MA0093.10.114799
MA0095.10
MA0098.10
MA0100.10.781912
MA0101.10.18882
MA0103.11.73908
MA0105.11.10292
MA0106.10.188607
MA0107.10.298859
MA0108.20.687911
MA0109.10
MA0111.10.251142
MA0113.10.170658
MA0114.11.97725
MA0115.10.448923
MA0116.11.09275
MA0117.10.42191
MA0119.14.69601
MA0122.11.11729
MA0124.10.616327
MA0125.10.55037
MA0130.10
MA0131.10.226654
MA0132.10
MA0133.10
MA0135.10.477472
MA0136.10.436338
MA0139.10.0907756
MA0140.10.390942
MA0141.10.346747
MA0142.10.282551
MA0143.10.180984
MA0144.10.167901
MA0145.10.128216
MA0146.10.00587209
MA0147.10.185738
MA0148.10.296488
MA0149.10.194806
MA0062.20.00279184
MA0035.20.397603
MA0039.20.000105729
MA0138.20.221177
MA0002.21.48616
MA0137.20.147294
MA0104.20.109863
MA0047.22.12116
MA0112.20.128205
MA0065.20.682501
MA0150.10.929689
MA0151.10
MA0152.10.475315
MA0153.11.2318
MA0154.10.243616
MA0155.10.0142364
MA0156.10.323742
MA0157.10.718286
MA0158.10
MA0159.10.201016
MA0160.10.623941
MA0161.10
MA0162.10.000265733
MA0163.10.00271648
MA0164.10.436868
MA0080.20.300456
MA0018.20.451116
MA0099.20.216863
MA0079.21.22184e-10
MA0102.21.0223
MA0258.10.145079
MA0259.10.064381
MA0442.10
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