FF:12180-129A2: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=RNA-Seq@SAMD00013677 | |||
|accession_numbers=CAGE;DRX008530;DRR009402;DRZ000827;DRZ002212;DRZ012177;DRZ013562!RNA-Seq;DRX012354;DRR013802;DRZ003003; | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000178,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0001009 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000178,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0001009 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr12:54694653..54694672,-!p2@NFE2!2.85!702.70!NFE2;;chr11:47400078..47400106,-!p1@SPI1!2.71!516.89!SPI1;;chr2:68592406..68592424,+!p1@PLEK!2.56!364.73!PLEK;;chrX:131623044..131623089,-!p1@MBNL3!2.36!896.92!MBNL3;;chrX:131622958..131622978,-!p3@MBNL3!2.36!282.92!MBNL3;;chr12:54694758..54694805,-!p1@NFE2!2.35!268.39!NFE2;;chrX:131623026..131623039,-!p5@MBNL3!2.32!209.51!MBNL3;;chrX:70315688..70315709,+!p1@FOXO4!2.31!454.19!FOXO4;;chrX:131622988..131623006,-!p8@MBNL3!2.26!178.93!MBNL3;;chr12:54694807..54694832,-!p3@NFE2!2.25!177.40!NFE2;;chr10:51572339..51572376,+!p4@NCOA4!2.22!360.91!NCOA4;;chr19:13213511..13213545,-!p2@LYL1!2.17!159.81!LYL1;;chr10:51572408..51572454,+!p3@NCOA4!2.11!707.29!NCOA4;;chr7:28220506..28220552,-!p3@JAZF1!2.08!118.52!JAZF1;;chr19:12998003..12998021,-!p1@KLF1!2.07!115.46!KLF1;;chr7:28220354..28220441,-!p1@JAZF1!1.99!1390.11!JAZF1;;chr3:128212033..128212051,-!p1@GATA2!1.97!91.76!GATA2;;chr2:70142232..70142251,+!p1@MXD1!1.93!445.78!MXD1;;chr10:51585430..51585448,+!p7@NCOA4!1.91!81.05!NCOA4;;chr10:51585449..51585487,+!p6@NCOA4!1.83!66.52!NCOA4;;chr1:43148855..43148908,+!p4@YBX1!1.78!92.52!YBX1;;chr1:47697965..47697991,-!p7@TAL1!1.78!58.88!TAL1;;chr16:85932760..85932775,+!p1@IRF8!1.77!57.35!IRF8;;chr2:148778973..148779035,+!p3@MBD5!1.76!142.99!MBD5;;chr3:141748010..141748030,-!p8@TFDP2!1.75!55.05!TFDP2;;chr21:34442439..34442455,+!p1@OLIG1!1.72!52.00!OLIG1;;chr4:109087445..109087463,-!p1@LEF1!1.72!51.23!LEF1;;chr7:50344289..50344323,+!p1@IKZF1!1.71!49.70!IKZF1;;chr10:111985713..111985774,+!p2@MXI1!1.69!431.26!MXI1;;chr12:54689552..54689574,-!p6@NFE2!1.69!48.17!NFE2;;chr17:45810594..45810608,+!p1@TBX21!1.66!45.11!TBX21;;chrX:48644984..48645005,+!p1@GATA1!1.66!44.35!GATA1;;chr1:23857325..23857416,-!p2@E2F2!1.64!48.94!E2F2;;chr11:47400062..47400077,-!p2@SPI1!1.64!42.82!SPI1;;chr11:47400032..47400043,-!p5@SPI1!1.59!37.47!SPI1;;chr10:111967345..111967422,+!p1@MXI1!1.58!565.83!MXI1;;chr19:13213555..13213568,-!p5@LYL1!1.57!35.94!LYL1;;chr19:13213634..13213645,-!p8@LYL1!1.56!35.17!LYL1;;chr19:13213662..13213686,-!p1@LYL1!1.54!49.70!LYL1;;chr11:47399996..47400014,-!p4@SPI1!1.54!33.64!SPI1;;chr7:50343634..50343717,+!p2@IKZF1!1.54!33.64!IKZF1;;chr3:27763807..27763822,-!p1@EOMES!1.54!33.64!EOMES;;chr3:187463179..187463201,-!p2@BCL6!1.53!132.28!BCL6;;chr11:47399947..47399961,-!p3@SPI1!1.52!32.11!SPI1;;chr11:47400045..47400060,-!p6@SPI1!1.52!32.11!SPI1;;chr5:133451294..133451310,+!p2@TCF7!1.51!31.35!TCF7;;chr12:54778471..54778528,-!p1@ZNF385A!1.50!30.59!ZNF385A;;chr2:192015701..192015743,-!p1@STAT4!1.49!40.53!STAT4;;chr17:17721569..17721574,-!p9@SREBF1!1.47!28.29!SREBF1;;chr9:117150254..117150271,-!p1@AKNA!1.43!68.82!AKNA;;chr1:25256756..25256774,-!p1@RUNX3!1.42!46.64!RUNX3;;chr7:28725740..28725778,+!p1@CREB5!1.41!214.10!CREB5;;chr7:28725715..28725727,+!p3@CREB5!1.41!29.06!CREB5;;chr19:16435625..16435682,+!p1@KLF2!1.40!746.29!KLF2;;chr2:231090433..231090469,+!p1@SP140!1.39!23.70!SP140;;chr2:100759010..100759035,-!p1@AFF3!1.38!22.94!AFF3;;chr10:51565239..51565263,+!p2@NCOA4!1.37!507.72!NCOA4;;chr12:54691711..54691725,-!p7@NFE2!1.37!22.17!NFE2;;chr1:43148792..43148849,+!p2@YBX1!1.35!79.52!YBX1;;chr6:108881012..108881034,+!p3@FOXO3!1.34!74.17!FOXO3;;chrX:107018836..107018862,-!p8@TSC22D3!1.34!20.65!TSC22D3;;chr9:135854091..135854159,+!p1@GFI1B!1.34!20.65!GFI1B;;chr2:231090471..231090504,+!p2@SP140!1.34!20.65!SP140;;chr2:68592394..68592405,+!p2@PLEK!1.34!20.65!PLEK;;chr12:10854646..10854658,-!p24@CSDA!1.32!19.88!CSDA;;chr1:8484007..8484061,-!p13@RERE!1.31!24.47!RERE;;chr5:133450365..133450444,+!p1@TCF7!1.30!84.11!TCF7;;chr6:144385698..144385742,-!p2@PLAGL1!1.30!22.94!PLAGL1;;chr17:38497662..38497713,+!p4@RARA!1.30!22.17!RARA;;chr1:23857128..23857141,-!p6@E2F2!1.30!19.12!E2F2;;chr11:111249993..111250006,-!p1@POU2AF1!1.30!19.12!POU2AF1;;chr12:54689532..54689551,-!p4@NFE2!1.30!19.12!NFE2;;chr2:192015750..192015793,-!p2@STAT4!1.29!24.47!STAT4;;chr12:54694738..54694749,-!p5@NFE2!1.29!18.35!NFE2;;chr17:38020392..38020477,-!p1@IKZF3!1.29!18.35!IKZF3;;chr1:23857698..23857733,-!p1@E2F2!1.28!32.88!E2F2;;chrX:106960285..106960299,-!p1@TSC22D3!1.27!461.08!TSC22D3;;chr16:3313791..3313834,+!p2@ZNF263!1.26!37.47!ZNF263;;chr11:128563948..128564003,+!p1@FLI1!1.25!195.75!FLI1;;chr3:63953435..63953499,+!p1@ATXN7!1.25!16.82!ATXN7;;chr5:176735063..176735088,-!p2@MXD3!1.25!16.82!MXD3;;chr13:41593425..41593480,-!p1@ELF1!1.21!95.58!ELF1;;chr9:137217986..137218049,+!p3@RXRA!1.21!43.58!RXRA;;chr4:185395633..185395651,-!p2@IRF2!1.21!24.47!IRF2;;chr16:88752889..88752921,-!p1@SNAI3!1.21!17.59!SNAI3;;chr6:391743..391759,+!p1@IRF4!1.21!15.29!IRF4;;chr12:6782377..6782382,-!p15@ZNF384!1.21!15.29!ZNF384;;chr5:131826457..131826514,-!p1@IRF1!1.20!571.18!IRF1;;chr1:47697881..47697910,-!p4@TAL1!1.19!14.53!TAL1;;chr20:56195474..56195506,-!p1@ZBP1!1.19!14.53!ZBP1;;chr2:70142189..70142223,+!p2@MXD1!1.18!100.17!MXD1;;chr19:50922187..50922204,+!p1@SPIB!1.17!13.76!SPIB;;chrX:70316005..70316034,+!p2@FOXO4!1.16!24.47!FOXO4;;chr4:185395590..185395627,-!p3@IRF2!1.16!16.82!IRF2;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!1.15!21.41!PCBP2;;chr20:50159198..50159299,-!p1@NFATC2!1.15!19.12!NFATC2;;chr20:56195525..56195556,-!p2@ZBP1!1.15!13.00!ZBP1;;chr7:149470641..149470694,-!p1@ZNF467!1.14!57.35!ZNF467;;chrX:106960180..106960197,-!p2@TSC22D3!1.14!48.94!TSC22D3;;chr6:106546808..106546833,+!p3@PRDM1!1.14!16.06!PRDM1;;chr2:208031943..208031978,-!p5@KLF7!1.13!16.82!KLF7;;chr3:71632840..71632857,-!p10@FOXP1!1.12!24.47!FOXP1;;chr7:50344251..50344288,+!p3@IKZF1!1.12!12.23!IKZF1;;chr12:10875658..10875708,-!p2@CSDA!1.11!27.53!CSDA;;chr4:185395191..185395226,-!p4@IRF2!1.10!16.06!IRF2;;chr14:99738059..99738086,-!p2@BCL11B!1.10!11.47!BCL11B;;chr5:88178983..88179012,-!p1@MEF2C!1.09!87.93!MEF2C;;chr7:149470540..149470596,-!p2@ZNF467!1.08!14.53!ZNF467;;chr2:231084659..231084721,-!p1@SP110!1.07!249.27!SP110;;chr21:30671235..30671253,+!p1@BACH1!1.07!138.40!BACH1;;chr17:38498594..38498661,+!p2@RARA!1.07!36.70!RARA;;chr2:28618532..28618610,+!p4@FOSL2!1.07!18.35!FOSL2;;chr9:32550965..32551031,-!p4@TOPORS!1.07!16.82!TOPORS;;chr19:45251395..45251432,+!p8@BCL3!1.07!10.70!BCL3;;chr7:50343895..50343936,+!p5@IKZF1!1.07!10.70!IKZF1;;chr12:124812308..124812313,-!p57@NCOR2!1.07!10.70!NCOR2;;chrX:107018969..107019024,-!p6@TSC22D3!1.06!14.53!TSC22D3;;chr9:117160738..117160782,-!p2@AKNA!1.05!42.82!AKNA;;chr3:18486354..18486377,-!p2@SATB1!1.05!13.00!SATB1;;chr2:208031542..208031595,-!p2@KLF7!1.04!71.11!KLF7;;chr2:231084639..231084654,-!p2@SP110!1.04!16.82!SP110;;chr12:54694686..54694697,-!p8@NFE2!1.04!9.94!NFE2;;chr5:140080022..140080042,+!p1@ZMAT2!1.03!524.54!ZMAT2;;chr21:30671211..30671234,+!p3@BACH1!1.03!48.17!BACH1;;chr19:56879534..56879615,+!p3@ZNF542!1.03!15.29!ZNF542;;chr10:31288398..31288455,-!p2@ZNF438!1.03!11.47!ZNF438;;chr5:142782823..142782854,-!p3@NR3C1!1.02!13.76!NR3C1;;chr10:8096631..8096660,+!p1@GATA3!1.02!11.47!GATA3;;chr1:164528297..164528309,+!p9@PBX1!1.01!12.23!PBX1;;chr1:47695003..47695042,-!p2@TAL1!1.01!9.18!TAL1;;chr17:37934365..37934387,-!p2@IKZF3!1.01!9.18!IKZF3;;chr15:60884706..60884743,-!p1@RORA!1.00!47.41!RORA;;chr4:106068026..106068084,+!p1@TET2!0.99!81.82!TET2;;chr7:64126535..64126559,+!p2@ZNF107!0.99!19.12!ZNF107;;chr3:71355163..71355209,-!p5@FOXP1!0.99!12.23!FOXP1;;chr19:56146352..56146420,+!p2@ZNF580,p2@ZNF581!0.97!56.58!ZNF580;;chr21:34398234..34398250,+!p1@OLIG2!0.97!8.41!OLIG2;;chr7:115670804..115670825,-!p1@TFEC!0.97!8.41!TFEC;;chr2:100759037..100759058,-!p2@AFF3!0.97!8.41!AFF3;;chr4:109090075..109090095,-!p2@LEF1!0.97!8.41!LEF1;;chr2:145277640..145277771,-!p1@ZEB2!0.96!113.17!ZEB2;;chr3:187463220..187463232,-!p3@BCL6!0.96!25.23!BCL6;;chr1:161736038..161736056,+!p4@ATF6!0.95!19.12!ATF6;;chr2:70167296..70167306,+!p3@MXD1!0.95!12.23!MXD1;;chr6:15246200..15246214,+!p2@JARID2!0.94!22.17!JARID2;;chr14:69262789..69262822,-!p2@ZFP36L1!0.94!20.65!ZFP36L1;;chr6:135516877..135516900,+!p5@MYB!0.94!7.65!MYB;;chr21:34442540..34442560,+!p2@OLIG1!0.94!7.65!OLIG1;;chr3:71542615..71542644,-!p12@FOXP1!0.94!7.65!FOXP1;;chr4:57522598..57522664,-!p3@HOPX!0.94!7.65!HOPX;;chr6:108880956..108881011,+!p1@FOXO3!0.93!52.00!FOXO3;;chr1:67395855..67395872,+!p5@MIER1!0.93!11.47!MIER1;;chr12:10854595..10854628,-!p7@CSDA!0.93!10.70!CSDA;;chr3:141747459..141747475,-!p1@TFDP2!0.92!63.46!TFDP2;;chr9:88969339..88969422,-!p2@ZCCHC6!0.92!59.64!ZCCHC6;;chr9:3525727..3525828,-!p2@RFX3!0.92!19.12!RFX3;;chr14:75988771..75988826,+!p1@BATF!0.92!9.94!BATF;;chr14:65569186..65569243,-!p1@MAX!0.91!436.61!MAX;;chr4:140098339..140098392,-!p1@ELF2!0.91!61.94!ELF2;;chr6:108882109..108882173,+!p2@FOXO3!0.91!40.53!FOXO3;;chr16:68119324..68119364,+!p1@NFATC3!0.91!33.64!NFATC3;;chr11:128392273..128392308,-!p2@ETS1!0.91!31.35!ETS1;;chr16:31885093..31885165,+!p1@ZNF267!0.90!110.11!ZNF267;;chr8:71316021..71316068,-!p1@NCOA2!0.90!67.29!NCOA2;;chr6:15249128..15249177,+!p4@JARID2!0.90!13.00!JARID2;;chr6:108882364..108882391,+!p4@FOXO3!0.90!9.94!FOXO3;;chr7:50348268..50348366,+!p4@IKZF1!0.90!6.88!IKZF1;;chr1:23857087..23857100,-!p8@E2F2!0.90!6.88!E2F2;;chrX:131574281..131574293,-!p18@MBNL3!0.90!6.88!MBNL3;;chr12:54691726..54691738,-!p9@NFE2!0.90!6.88!NFE2;;chr3:18487057..18487105,-!p4@SATB1!0.90!6.88!SATB1;;chr17:38498402..38498445,+!p3@RARA!0.89!25.23!RARA;;chrX:101186981..101187030,-!p1@ZMAT1!0.89!22.94!ZMAT1;;chr6:91006518..91006570,-!p1@BACH2!0.89!16.06!BACH2;;chr19:13213704..13213726,-!p3@LYL1!0.89!9.18!LYL1;;chr12:57505121..57505179,-!p1@STAT6!0.88!272.21!STAT6;;chr4:38665769..38665801,+!p2@KLF3!0.88!63.46!KLF3;;chr1:158979872..158979898,+!p3@IFI16!0.88!21.41!IFI16;;chr6:15245677..15245723,+!p6@JARID2!0.88!9.94!JARID2;;chr9:117150303..117150312,-!p3@AKNA!0.88!8.41!AKNA;;chr6:106534230..106534254,+!p2@PRDM1!0.87!16.82!PRDM1;;chr4:38665703..38665713,+!p5@KLF3!0.87!13.00!KLF3;;chr2:208394817..208394834,+!p3@CREB1!0.86!26.76!CREB1;;chr21:36421535..36421610,-!p2@RUNX1!0.86!23.70!RUNX1;;chr19:58326267..58326292,-!p1@ZNF552!0.85!22.94!ZNF552;;chr19:42636586..42636607,-!p1@POU2F2!0.85!17.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| |expression_enrichment_score=chr12:54694653..54694672,-!p2@NFE2!2.85!702.70!NFE2;;chr11:47400078..47400106,-!p1@SPI1!2.71!516.89!SPI1;;chr2:68592406..68592424,+!p1@PLEK!2.56!364.73!PLEK;;chrX:131623044..131623089,-!p1@MBNL3!2.36!896.92!MBNL3;;chrX:131622958..131622978,-!p3@MBNL3!2.36!282.92!MBNL3;;chr12:54694758..54694805,-!p1@NFE2!2.35!268.39!NFE2;;chrX:131623026..131623039,-!p5@MBNL3!2.32!209.51!MBNL3;;chrX:70315688..70315709,+!p1@FOXO4!2.31!454.19!FOXO4;;chrX:131622988..131623006,-!p8@MBNL3!2.26!178.93!MBNL3;;chr12:54694807..54694832,-!p3@NFE2!2.25!177.40!NFE2;;chr10:51572339..51572376,+!p4@NCOA4!2.22!360.91!NCOA4;;chr19:13213511..13213545,-!p2@LYL1!2.17!159.81!LYL1;;chr10:51572408..51572454,+!p3@NCOA4!2.11!707.29!NCOA4;;chr7:28220506..28220552,-!p3@JAZF1!2.08!118.52!JAZF1;;chr19:12998003..12998021,-!p1@KLF1!2.07!115.46!KLF1;;chr7:28220354..28220441,-!p1@JAZF1!1.99!1390.11!JAZF1;;chr3:128212033..128212051,-!p1@GATA2!1.97!91.76!GATA2;;chr2:70142232..70142251,+!p1@MXD1!1.93!445.78!MXD1;;chr10:51585430..51585448,+!p7@NCOA4!1.91!81.05!NCOA4;;chr10:51585449..51585487,+!p6@NCOA4!1.83!66.52!NCOA4;;chr1:43148855..43148908,+!p4@YBX1!1.78!92.52!YBX1;;chr1:47697965..47697991,-!p7@TAL1!1.78!58.88!TAL1;;chr16:85932760..85932775,+!p1@IRF8!1.77!57.35!IRF8;;chr2:148778973..148779035,+!p3@MBD5!1.76!142.99!MBD5;;chr3:141748010..141748030,-!p8@TFDP2!1.75!55.05!TFDP2;;chr21:34442439..34442455,+!p1@OLIG1!1.72!52.00!OLIG1;;chr4:109087445..109087463,-!p1@LEF1!1.72!51.23!LEF1;;chr7:50344289..50344323,+!p1@IKZF1!1.71!49.70!IKZF1;;chr10:111985713..111985774,+!p2@MXI1!1.69!431.26!MXI1;;chr12:54689552..54689574,-!p6@NFE2!1.69!48.17!NFE2;;chr17:45810594..45810608,+!p1@TBX21!1.66!45.11!TBX21;;chrX:48644984..48645005,+!p1@GATA1!1.66!44.35!GATA1;;chr1:23857325..23857416,-!p2@E2F2!1.64!48.94!E2F2;;chr11:47400062..47400077,-!p2@SPI1!1.64!42.82!SPI1;;chr11:47400032..47400043,-!p5@SPI1!1.59!37.47!SPI1;;chr10:111967345..111967422,+!p1@MXI1!1.58!565.83!MXI1;;chr19:13213555..13213568,-!p5@LYL1!1.57!35.94!LYL1;;chr19:13213634..13213645,-!p8@LYL1!1.56!35.17!LYL1;;chr19:13213662..13213686,-!p1@LYL1!1.54!49.70!LYL1;;chr11:47399996..47400014,-!p4@SPI1!1.54!33.64!SPI1;;chr7:50343634..50343717,+!p2@IKZF1!1.54!33.64!IKZF1;;chr3:27763807..27763822,-!p1@EOMES!1.54!33.64!EOMES;;chr3:187463179..187463201,-!p2@BCL6!1.53!132.28!BCL6;;chr11:47399947..47399961,-!p3@SPI1!1.52!32.11!SPI1;;chr11:47400045..47400060,-!p6@SPI1!1.52!32.11!SPI1;;chr5:133451294..133451310,+!p2@TCF7!1.51!31.35!TCF7;;chr12:54778471..54778528,-!p1@ZNF385A!1.50!30.59!ZNF385A;;chr2:192015701..192015743,-!p1@STAT4!1.49!40.53!STAT4;;chr17:17721569..17721574,-!p9@SREBF1!1.47!28.29!SREBF1;;chr9:117150254..117150271,-!p1@AKNA!1.43!68.82!AKNA;;chr1:25256756..25256774,-!p1@RUNX3!1.42!46.64!RUNX3;;chr7:28725740..28725778,+!p1@CREB5!1.41!214.10!CREB5;;chr7:28725715..28725727,+!p3@CREB5!1.41!29.06!CREB5;;chr19:16435625..16435682,+!p1@KLF2!1.40!746.29!KLF2;;chr2:231090433..231090469,+!p1@SP140!1.39!23.70!SP140;;chr2:100759010..100759035,-!p1@AFF3!1.38!22.94!AFF3;;chr10:51565239..51565263,+!p2@NCOA4!1.37!507.72!NCOA4;;chr12:54691711..54691725,-!p7@NFE2!1.37!22.17!NFE2;;chr1:43148792..43148849,+!p2@YBX1!1.35!79.52!YBX1;;chr6:108881012..108881034,+!p3@FOXO3!1.34!74.17!FOXO3;;chrX:107018836..107018862,-!p8@TSC22D3!1.34!20.65!TSC22D3;;chr9:135854091..135854159,+!p1@GFI1B!1.34!20.65!GFI1B;;chr2:231090471..231090504,+!p2@SP140!1.34!20.65!SP140;;chr2:68592394..68592405,+!p2@PLEK!1.34!20.65!PLEK;;chr12:10854646..10854658,-!p24@CSDA!1.32!19.88!CSDA;;chr1:8484007..8484061,-!p13@RERE!1.31!24.47!RERE;;chr5:133450365..133450444,+!p1@TCF7!1.30!84.11!TCF7;;chr6:144385698..144385742,-!p2@PLAGL1!1.30!22.94!PLAGL1;;chr17:38497662..38497713,+!p4@RARA!1.30!22.17!RARA;;chr1:23857128..23857141,-!p6@E2F2!1.30!19.12!E2F2;;chr11:111249993..111250006,-!p1@POU2AF1!1.30!19.12!POU2AF1;;chr12:54689532..54689551,-!p4@NFE2!1.30!19.12!NFE2;;chr2:192015750..192015793,-!p2@STAT4!1.29!24.47!STAT4;;chr12:54694738..54694749,-!p5@NFE2!1.29!18.35!NFE2;;chr17:38020392..38020477,-!p1@IKZF3!1.29!18.35!IKZF3;;chr1:23857698..23857733,-!p1@E2F2!1.28!32.88!E2F2;;chrX:106960285..106960299,-!p1@TSC22D3!1.27!461.08!TSC22D3;;chr16:3313791..3313834,+!p2@ZNF263!1.26!37.47!ZNF263;;chr11:128563948..128564003,+!p1@FLI1!1.25!195.75!FLI1;;chr3:63953435..63953499,+!p1@ATXN7!1.25!16.82!ATXN7;;chr5:176735063..176735088,-!p2@MXD3!1.25!16.82!MXD3;;chr13:41593425..41593480,-!p1@ELF1!1.21!95.58!ELF1;;chr9:137217986..137218049,+!p3@RXRA!1.21!43.58!RXRA;;chr4:185395633..185395651,-!p2@IRF2!1.21!24.47!IRF2;;chr16:88752889..88752921,-!p1@SNAI3!1.21!17.59!SNAI3;;chr6:391743..391759,+!p1@IRF4!1.21!15.29!IRF4;;chr12:6782377..6782382,-!p15@ZNF384!1.21!15.29!ZNF384;;chr5:131826457..131826514,-!p1@IRF1!1.20!571.18!IRF1;;chr1:47697881..47697910,-!p4@TAL1!1.19!14.53!TAL1;;chr20:56195474..56195506,-!p1@ZBP1!1.19!14.53!ZBP1;;chr2:70142189..70142223,+!p2@MXD1!1.18!100.17!MXD1;;chr19:50922187..50922204,+!p1@SPIB!1.17!13.76!SPIB;;chrX:70316005..70316034,+!p2@FOXO4!1.16!24.47!FOXO4;;chr4:185395590..185395627,-!p3@IRF2!1.16!16.82!IRF2;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!1.15!21.41!PCBP2;;chr20:50159198..50159299,-!p1@NFATC2!1.15!19.12!NFATC2;;chr20:56195525..56195556,-!p2@ZBP1!1.15!13.00!ZBP1;;chr7:149470641..149470694,-!p1@ZNF467!1.14!57.35!ZNF467;;chrX:106960180..106960197,-!p2@TSC22D3!1.14!48.94!TSC22D3;;chr6:106546808..106546833,+!p3@PRDM1!1.14!16.06!PRDM1;;chr2:208031943..208031978,-!p5@KLF7!1.13!16.82!KLF7;;chr3:71632840..71632857,-!p10@FOXP1!1.12!24.47!FOXP1;;chr7:50344251..50344288,+!p3@IKZF1!1.12!12.23!IKZF1;;chr12:10875658..10875708,-!p2@CSDA!1.11!27.53!CSDA;;chr4:185395191..185395226,-!p4@IRF2!1.10!16.06!IRF2;;chr14:99738059..99738086,-!p2@BCL11B!1.10!11.47!BCL11B;;chr5:88178983..88179012,-!p1@MEF2C!1.09!87.93!MEF2C;;chr7:149470540..149470596,-!p2@ZNF467!1.08!14.53!ZNF467;;chr2:231084659..231084721,-!p1@SP110!1.07!249.27!SP110;;chr21:30671235..30671253,+!p1@BACH1!1.07!138.40!BACH1;;chr17:38498594..38498661,+!p2@RARA!1.07!36.70!RARA;;chr2:28618532..28618610,+!p4@FOSL2!1.07!18.35!FOSL2;;chr9:32550965..32551031,-!p4@TOPORS!1.07!16.82!TOPORS;;chr19:45251395..45251432,+!p8@BCL3!1.07!10.70!BCL3;;chr7:50343895..50343936,+!p5@IKZF1!1.07!10.70!IKZF1;;chr12:124812308..124812313,-!p57@NCOR2!1.07!10.70!NCOR2;;chrX:107018969..107019024,-!p6@TSC22D3!1.06!14.53!TSC22D3;;chr9:117160738..117160782,-!p2@AKNA!1.05!42.82!AKNA;;chr3:18486354..18486377,-!p2@SATB1!1.05!13.00!SATB1;;chr2:208031542..208031595,-!p2@KLF7!1.04!71.11!KLF7;;chr2:231084639..231084654,-!p2@SP110!1.04!16.82!SP110;;chr12:54694686..54694697,-!p8@NFE2!1.04!9.94!NFE2;;chr5:140080022..140080042,+!p1@ZMAT2!1.03!524.54!ZMAT2;;chr21:30671211..30671234,+!p3@BACH1!1.03!48.17!BACH1;;chr19:56879534..56879615,+!p3@ZNF542!1.03!15.29!ZNF542;;chr10:31288398..31288455,-!p2@ZNF438!1.03!11.47!ZNF438;;chr5:142782823..142782854,-!p3@NR3C1!1.02!13.76!NR3C1;;chr10:8096631..8096660,+!p1@GATA3!1.02!11.47!GATA3;;chr1:164528297..164528309,+!p9@PBX1!1.01!12.23!PBX1;;chr1:47695003..47695042,-!p2@TAL1!1.01!9.18!TAL1;;chr17:37934365..37934387,-!p2@IKZF3!1.01!9.18!IKZF3;;chr15:60884706..60884743,-!p1@RORA!1.00!47.41!RORA;;chr4:106068026..106068084,+!p1@TET2!0.99!81.82!TET2;;chr7:64126535..64126559,+!p2@ZNF107!0.99!19.12!ZNF107;;chr3:71355163..71355209,-!p5@FOXP1!0.99!12.23!FOXP1;;chr19:56146352..56146420,+!p2@ZNF580,p2@ZNF581!0.97!56.58!ZNF580;;chr21:34398234..34398250,+!p1@OLIG2!0.97!8.41!OLIG2;;chr7:115670804..115670825,-!p1@TFEC!0.97!8.41!TFEC;;chr2:100759037..100759058,-!p2@AFF3!0.97!8.41!AFF3;;chr4:109090075..109090095,-!p2@LEF1!0.97!8.41!LEF1;;chr2:145277640..145277771,-!p1@ZEB2!0.96!113.17!ZEB2;;chr3:187463220..187463232,-!p3@BCL6!0.96!25.23!BCL6;;chr1:161736038..161736056,+!p4@ATF6!0.95!19.12!ATF6;;chr2:70167296..70167306,+!p3@MXD1!0.95!12.23!MXD1;;chr6:15246200..15246214,+!p2@JARID2!0.94!22.17!JARID2;;chr14:69262789..69262822,-!p2@ZFP36L1!0.94!20.65!ZFP36L1;;chr6:135516877..135516900,+!p5@MYB!0.94!7.65!MYB;;chr21:34442540..34442560,+!p2@OLIG1!0.94!7.65!OLIG1;;chr3:71542615..71542644,-!p12@FOXP1!0.94!7.65!FOXP1;;chr4:57522598..57522664,-!p3@HOPX!0.94!7.65!HOPX;;chr6:108880956..108881011,+!p1@FOXO3!0.93!52.00!FOXO3;;chr1:67395855..67395872,+!p5@MIER1!0.93!11.47!MIER1;;chr12:10854595..10854628,-!p7@CSDA!0.93!10.70!CSDA;;chr3:141747459..141747475,-!p1@TFDP2!0.92!63.46!TFDP2;;chr9:88969339..88969422,-!p2@ZCCHC6!0.92!59.64!ZCCHC6;;chr9:3525727..3525828,-!p2@RFX3!0.92!19.12!RFX3;;chr14:75988771..75988826,+!p1@BATF!0.92!9.94!BATF;;chr14:65569186..65569243,-!p1@MAX!0.91!436.61!MAX;;chr4:140098339..140098392,-!p1@ELF2!0.91!61.94!ELF2;;chr6:108882109..108882173,+!p2@FOXO3!0.91!40.53!FOXO3;;chr16:68119324..68119364,+!p1@NFATC3!0.91!33.64!NFATC3;;chr11:128392273..128392308,-!p2@ETS1!0.91!31.35!ETS1;;chr16:31885093..31885165,+!p1@ZNF267!0.90!110.11!ZNF267;;chr8:71316021..71316068,-!p1@NCOA2!0.90!67.29!NCOA2;;chr6:15249128..15249177,+!p4@JARID2!0.90!13.00!JARID2;;chr6:108882364..108882391,+!p4@FOXO3!0.90!9.94!FOXO3;;chr7:50348268..50348366,+!p4@IKZF1!0.90!6.88!IKZF1;;chr1:23857087..23857100,-!p8@E2F2!0.90!6.88!E2F2;;chrX:131574281..131574293,-!p18@MBNL3!0.90!6.88!MBNL3;;chr12:54691726..54691738,-!p9@NFE2!0.90!6.88!NFE2;;chr3:18487057..18487105,-!p4@SATB1!0.90!6.88!SATB1;;chr17:38498402..38498445,+!p3@RARA!0.89!25.23!RARA;;chrX:101186981..101187030,-!p1@ZMAT1!0.89!22.94!ZMAT1;;chr6:91006518..91006570,-!p1@BACH2!0.89!16.06!BACH2;;chr19:13213704..13213726,-!p3@LYL1!0.89!9.18!LYL1;;chr12:57505121..57505179,-!p1@STAT6!0.88!272.21!STAT6;;chr4:38665769..38665801,+!p2@KLF3!0.88!63.46!KLF3;;chr1:158979872..158979898,+!p3@IFI16!0.88!21.41!IFI16;;chr6:15245677..15245723,+!p6@JARID2!0.88!9.94!JARID2;;chr9:117150303..117150312,-!p3@AKNA!0.88!8.41!AKNA;;chr6:106534230..106534254,+!p2@PRDM1!0.87!16.82!PRDM1;;chr4:38665703..38665713,+!p5@KLF3!0.87!13.00!KLF3;;chr2:208394817..208394834,+!p3@CREB1!0.86!26.76!CREB1;;chr21:36421535..36421610,-!p2@RUNX1!0.86!23.70!RUNX1;;chr19:58326267..58326292,-!p1@ZNF552!0.85!22.94!ZNF552;;chr19:42636586..42636607,-!p1@POU2F2!0.85!17.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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000178;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 37: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation2.CNhs11671.12180-129A2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation2.CNhs11671.12180-129A2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation2.CNhs11671.12180-129A2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation2.CNhs11671.12180-129A2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation2.CNhs11671.12180-129A2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12180-129A2 | |id=FF:12180-129A2 | ||
|is_a=EFO:0002091;;FF:0000002;;FF:0000281 | |is_a=EFO:0002091;;FF:0000002;;FF:0000281 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11671!RDhi10001 | |||
|library_id_phase_based=2:CNhs11671 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12180 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12180 | |||
|name=Whole blood (ribopure), donor090309, donation2 | |name=Whole blood (ribopure), donor090309, donation2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 45: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11671,LSID808,release008,COMPLETED | |profile_hcage=CNhs11671,LSID808,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 62: | Line 78: | ||
|rna_weight_ug=14.3 | |rna_weight_ug=14.3 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 83: | Line 100: | ||
|top_motifs=GATA6:4.17062460993;T:2.47333487981;SPI1:2.32301165007;ETS1,2:2.25926557459;SPIB:2.1955147047;STAT5{A,B}:2.12222505491;FOXO1,3,4:2.11527720506;FOX{F1,F2,J1}:1.95699512733;ELF1,2,4:1.95157116663;FOX{D1,D2}:1.83567977691;RUNX1..3:1.74177970934;DMAP1_NCOR{1,2}_SMARC:1.6814377776;SPZ1:1.58895342732;FOXD3:1.57554823736;TLX2:1.50335970704;TFAP4:1.49128089017;IRF7:1.4212968168;FOXP3:1.32192725258;NANOG{mouse}:1.29747058104;TGIF1:1.16808910995;CEBPA,B_DDIT3:1.16024016968;EP300:1.15982260035;HBP1_HMGB_SSRP1_UBTF:1.09542587923;HMX1:1.0711927277;PDX1:1.07109480829;IRF1,2:1.06068163818;FOX{I1,J2}:1.03599109065;ALX1:1.03064237242;STAT1,3:1.01017016814;NKX3-2:0.978787199247;PAX3,7:0.977532315916;CDX1,2,4:0.969058856389;ZNF148:0.929075494393;NFIL3:0.893167120916;SREBF1,2:0.825489370251;MYOD1:0.816904914443;FOXN1:0.78323022736;NFATC1..3:0.767575831927;POU5F1:0.736467121477;TOPORS:0.72820695226;SMAD1..7,9:0.700540284029;STAT2,4,6:0.660660929004;CRX:0.650740616567;PAX2:0.644778224934;RBPJ:0.634326808087;NFE2L2:0.608728908416;NFIX:0.588784560151;MYFfamily:0.554071121954;POU2F1..3:0.551044566191;ZNF423:0.528562224561;TFCP2:0.528350789487;RFX2..5_RFXANK_RFXAP:0.49622080044;AIRE:0.49197297685;ZEB1:0.467560343427;NKX2-2,8:0.430524845994;IKZF2:0.397831496426;NR6A1:0.39404130428;RREB1:0.372946230211;MZF1:0.372124578643;BPTF:0.368707969293;PPARG:0.359599160236;NR1H4:0.340845613492;OCT4_SOX2{dimer}:0.326757189576;RXRA_VDR{dimer}:0.305262440975;FOXA2:0.298707390689;EVI1:0.284423382135;DBP:0.230925112826;SNAI1..3:0.218217595182;BREu{core}:0.180808456719;HLF:0.139353305398;CUX2:0.10277036925;NFE2L1:0.0967143101735;FOXP1:0.095089389198;ZNF238:0.0913201855656;NR3C1:0.0826401145823;MYB:0.0772543854661;GATA4:0.0522155712247;NFKB1_REL_RELA:0.0255889071885;NFE2:-0.0124762213137;ATF5_CREB3:-0.0273836872534;MAZ:-0.0298854850979;NKX3-1:-0.0406364386115;PITX1..3:-0.050162086436;LMO2:-0.0694318707765;LEF1_TCF7_TCF7L1,2:-0.119189876576;SRF:-0.132923325504;XCPE1{core}:-0.175652843449;NHLH1,2:-0.210785538616;POU1F1:-0.214425096263;HOXA9_MEIS1:-0.217711903208;GLI1..3:-0.232786539349;ADNP_IRX_SIX_ZHX:-0.24720614545;PAX4:-0.262139602869;SP1:-0.271629147599;ELK1,4_GABP{A,B1}:-0.297644394564;TAL1_TCF{3,4,12}:-0.348598554353;REST:-0.355233428155;CREB1:-0.392344068139;ATF2:-0.399000820143;BACH2:-0.424205909552;VSX1,2:-0.444130755058;HMGA1,2:-0.450401173984;POU6F1:-0.45381271181;ZBTB16:-0.4952785766;FOSL2:-0.509731069165;PRDM1:-0.523696439064;RFX1:-0.53107670724;NKX2-1,4:-0.545455354279;MTE{core}:-0.563767138191;RORA:-0.575962533232;ALX4:-0.585964167506;FOS_FOS{B,L1}_JUN{B,D}:-0.594833295036;FOXQ1:-0.608963324947;PRRX1,2:-0.624276008194;ZFP161:-0.644686052027;KLF4:-0.650385120095;TLX1..3_NFIC{dimer}:-0.671948083716;HNF4A_NR2F1,2:-0.67373047843;NRF1:-0.685380663926;MAFB:-0.703522546833;HNF1A:-0.707275171663;MEF2{A,B,C,D}:-0.708540276412;ESR1:-0.73171181951;TFAP2{A,C}:-0.748713830942;LHX3,4:-0.754124979127;XBP1:-0.769229340375;NKX6-1,2:-0.775627509421;NR5A1,2:-0.791883793505;GTF2I:-0.792944402902;ZNF143:-0.808407805789;ATF4:-0.829959232233;TBX4,5:-0.864305437656;NFY{A,B,C}:-0.868028633164;PATZ1:-0.872631337629;AR:-0.902062107348;YY1:-1.03203370331;MTF1:-1.0592683068;PAX6:-1.0593728067;PBX1:-1.06642804227;SOX2:-1.06670949508;TBP:-1.06721387797;EN1,2:-1.07187324655;TFAP2B:-1.07466330723;JUN:-1.07795375375;EGR1..3:-1.08236115127;SOX{8,9,10}:-1.109718423;PAX5:-1.11357588665;HIC1:-1.1414387902;MED-1{core}:-1.2194279352;E2F1..5:-1.22239733441;NKX2-3_NKX2-5:-1.22584981848;SOX5:-1.23364672419;EBF1:-1.2398468829;NANOG:-1.25570335609;FOXL1:-1.27747528481;GZF1:-1.2859859839;ZNF384:-1.3447305367;RXR{A,B,G}:-1.36284915239;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.36893771319;TP53:-1.37419315751;GFI1:-1.38924918005;HES1:-1.39012907129;UFEwm:-1.40866089988;GCM1,2:-1.45076525301;HIF1A:-1.46037423002;HSF1,2:-1.47257507019;ZBTB6:-1.47478402392;POU3F1..4:-1.47524232272;HOX{A6,A7,B6,B7}:-1.49724611282;MYBL2:-1.50923070691;ESRRA:-1.51134929847;GFI1B:-1.51502849333;PAX8:-1.58003836166;TEAD1:-1.58528205481;ZIC1..3:-1.59205162142;AHR_ARNT_ARNT2:-1.64898674616;bHLH_family:-1.69309512164;FOXM1:-1.69525685165;HAND1,2:-1.72753645065;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.78477281686;TEF:-1.79239421756;ATF6:-1.91460878737;HOX{A4,D4}:-1.93695234976;CDC5L:-1.93960025525;GTF2A1,2:-1.9562705436;HOX{A5,B5}:-2.11475923707;ARID5B:-2.12677836759;TFDP1:-2.35572218491;SOX17:-2.37686532277;ONECUT1,2:-2.39697259705;PAX1,9:-2.5025167081;IKZF1:-3.07067697355 | |top_motifs=GATA6:4.17062460993;T:2.47333487981;SPI1:2.32301165007;ETS1,2:2.25926557459;SPIB:2.1955147047;STAT5{A,B}:2.12222505491;FOXO1,3,4:2.11527720506;FOX{F1,F2,J1}:1.95699512733;ELF1,2,4:1.95157116663;FOX{D1,D2}:1.83567977691;RUNX1..3:1.74177970934;DMAP1_NCOR{1,2}_SMARC:1.6814377776;SPZ1:1.58895342732;FOXD3:1.57554823736;TLX2:1.50335970704;TFAP4:1.49128089017;IRF7:1.4212968168;FOXP3:1.32192725258;NANOG{mouse}:1.29747058104;TGIF1:1.16808910995;CEBPA,B_DDIT3:1.16024016968;EP300:1.15982260035;HBP1_HMGB_SSRP1_UBTF:1.09542587923;HMX1:1.0711927277;PDX1:1.07109480829;IRF1,2:1.06068163818;FOX{I1,J2}:1.03599109065;ALX1:1.03064237242;STAT1,3:1.01017016814;NKX3-2:0.978787199247;PAX3,7:0.977532315916;CDX1,2,4:0.969058856389;ZNF148:0.929075494393;NFIL3:0.893167120916;SREBF1,2:0.825489370251;MYOD1:0.816904914443;FOXN1:0.78323022736;NFATC1..3:0.767575831927;POU5F1:0.736467121477;TOPORS:0.72820695226;SMAD1..7,9:0.700540284029;STAT2,4,6:0.660660929004;CRX:0.650740616567;PAX2:0.644778224934;RBPJ:0.634326808087;NFE2L2:0.608728908416;NFIX:0.588784560151;MYFfamily:0.554071121954;POU2F1..3:0.551044566191;ZNF423:0.528562224561;TFCP2:0.528350789487;RFX2..5_RFXANK_RFXAP:0.49622080044;AIRE:0.49197297685;ZEB1:0.467560343427;NKX2-2,8:0.430524845994;IKZF2:0.397831496426;NR6A1:0.39404130428;RREB1:0.372946230211;MZF1:0.372124578643;BPTF:0.368707969293;PPARG:0.359599160236;NR1H4:0.340845613492;OCT4_SOX2{dimer}:0.326757189576;RXRA_VDR{dimer}:0.305262440975;FOXA2:0.298707390689;EVI1:0.284423382135;DBP:0.230925112826;SNAI1..3:0.218217595182;BREu{core}:0.180808456719;HLF:0.139353305398;CUX2:0.10277036925;NFE2L1:0.0967143101735;FOXP1:0.095089389198;ZNF238:0.0913201855656;NR3C1:0.0826401145823;MYB:0.0772543854661;GATA4:0.0522155712247;NFKB1_REL_RELA:0.0255889071885;NFE2:-0.0124762213137;ATF5_CREB3:-0.0273836872534;MAZ:-0.0298854850979;NKX3-1:-0.0406364386115;PITX1..3:-0.050162086436;LMO2:-0.0694318707765;LEF1_TCF7_TCF7L1,2:-0.119189876576;SRF:-0.132923325504;XCPE1{core}:-0.175652843449;NHLH1,2:-0.210785538616;POU1F1:-0.214425096263;HOXA9_MEIS1:-0.217711903208;GLI1..3:-0.232786539349;ADNP_IRX_SIX_ZHX:-0.24720614545;PAX4:-0.262139602869;SP1:-0.271629147599;ELK1,4_GABP{A,B1}:-0.297644394564;TAL1_TCF{3,4,12}:-0.348598554353;REST:-0.355233428155;CREB1:-0.392344068139;ATF2:-0.399000820143;BACH2:-0.424205909552;VSX1,2:-0.444130755058;HMGA1,2:-0.450401173984;POU6F1:-0.45381271181;ZBTB16:-0.4952785766;FOSL2:-0.509731069165;PRDM1:-0.523696439064;RFX1:-0.53107670724;NKX2-1,4:-0.545455354279;MTE{core}:-0.563767138191;RORA:-0.575962533232;ALX4:-0.585964167506;FOS_FOS{B,L1}_JUN{B,D}:-0.594833295036;FOXQ1:-0.608963324947;PRRX1,2:-0.624276008194;ZFP161:-0.644686052027;KLF4:-0.650385120095;TLX1..3_NFIC{dimer}:-0.671948083716;HNF4A_NR2F1,2:-0.67373047843;NRF1:-0.685380663926;MAFB:-0.703522546833;HNF1A:-0.707275171663;MEF2{A,B,C,D}:-0.708540276412;ESR1:-0.73171181951;TFAP2{A,C}:-0.748713830942;LHX3,4:-0.754124979127;XBP1:-0.769229340375;NKX6-1,2:-0.775627509421;NR5A1,2:-0.791883793505;GTF2I:-0.792944402902;ZNF143:-0.808407805789;ATF4:-0.829959232233;TBX4,5:-0.864305437656;NFY{A,B,C}:-0.868028633164;PATZ1:-0.872631337629;AR:-0.902062107348;YY1:-1.03203370331;MTF1:-1.0592683068;PAX6:-1.0593728067;PBX1:-1.06642804227;SOX2:-1.06670949508;TBP:-1.06721387797;EN1,2:-1.07187324655;TFAP2B:-1.07466330723;JUN:-1.07795375375;EGR1..3:-1.08236115127;SOX{8,9,10}:-1.109718423;PAX5:-1.11357588665;HIC1:-1.1414387902;MED-1{core}:-1.2194279352;E2F1..5:-1.22239733441;NKX2-3_NKX2-5:-1.22584981848;SOX5:-1.23364672419;EBF1:-1.2398468829;NANOG:-1.25570335609;FOXL1:-1.27747528481;GZF1:-1.2859859839;ZNF384:-1.3447305367;RXR{A,B,G}:-1.36284915239;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.36893771319;TP53:-1.37419315751;GFI1:-1.38924918005;HES1:-1.39012907129;UFEwm:-1.40866089988;GCM1,2:-1.45076525301;HIF1A:-1.46037423002;HSF1,2:-1.47257507019;ZBTB6:-1.47478402392;POU3F1..4:-1.47524232272;HOX{A6,A7,B6,B7}:-1.49724611282;MYBL2:-1.50923070691;ESRRA:-1.51134929847;GFI1B:-1.51502849333;PAX8:-1.58003836166;TEAD1:-1.58528205481;ZIC1..3:-1.59205162142;AHR_ARNT_ARNT2:-1.64898674616;bHLH_family:-1.69309512164;FOXM1:-1.69525685165;HAND1,2:-1.72753645065;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.78477281686;TEF:-1.79239421756;ATF6:-1.91460878737;HOX{A4,D4}:-1.93695234976;CDC5L:-1.93960025525;GTF2A1,2:-1.9562705436;HOX{A5,B5}:-2.11475923707;ARID5B:-2.12677836759;TFDP1:-2.35572218491;SOX17:-2.37686532277;ONECUT1,2:-2.39697259705;PAX1,9:-2.5025167081;IKZF1:-3.07067697355 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12180-129A2;search_select_hide=table117:FF:12180-129A2 | |||
}} | }} |
Latest revision as of 18:33, 4 June 2020
Name: | Whole blood (ribopure), donor090309, donation2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11671,RDhi10001 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11671
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11671
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.149 |
10 | 10 | 0.0942 |
100 | 100 | 0.496 |
101 | 101 | 0.211 |
102 | 102 | 0.579 |
103 | 103 | 0.101 |
104 | 104 | 0.885 |
105 | 105 | 0.0661 |
106 | 106 | 0.0554 |
107 | 107 | 0.657 |
108 | 108 | 0.881 |
109 | 109 | 0.112 |
11 | 11 | 0.108 |
110 | 110 | 0.359 |
111 | 111 | 0.28 |
112 | 112 | 0.123 |
113 | 113 | 0.178 |
114 | 114 | 0.0551 |
115 | 115 | 0.181 |
116 | 116 | 0.893 |
117 | 117 | 0.0417 |
118 | 118 | 0.464 |
119 | 119 | 0.333 |
12 | 12 | 0.441 |
120 | 120 | 0.698 |
121 | 121 | 0.657 |
122 | 122 | 0.257 |
123 | 123 | 0.105 |
124 | 124 | 0.0309 |
125 | 125 | 0.209 |
126 | 126 | 0.278 |
127 | 127 | 0.22 |
128 | 128 | 0.0459 |
129 | 129 | 0.376 |
13 | 13 | 0.862 |
130 | 130 | 0.539 |
131 | 131 | 0.369 |
132 | 132 | 0.602 |
133 | 133 | 0.372 |
134 | 134 | 0.75 |
135 | 135 | 0.177 |
136 | 136 | 1 |
137 | 137 | 0.0127 |
138 | 138 | 0.0784 |
139 | 139 | 0.0342 |
14 | 14 | 0.188 |
140 | 140 | 0.443 |
141 | 141 | 0.486 |
142 | 142 | 0.74 |
143 | 143 | 0.0035 |
144 | 144 | 0.802 |
145 | 145 | 0.328 |
146 | 146 | 0.617 |
147 | 147 | 0.223 |
148 | 148 | 0.191 |
149 | 149 | 0.479 |
15 | 15 | 0.0525 |
150 | 150 | 0.93 |
151 | 151 | 0.27 |
152 | 152 | 0.404 |
153 | 153 | 0.438 |
154 | 154 | 0.865 |
155 | 155 | 0.196 |
156 | 156 | 0.765 |
157 | 157 | 0.233 |
158 | 158 | 0.218 |
159 | 159 | 0.265 |
16 | 16 | 0.451 |
160 | 160 | 0.718 |
161 | 161 | 0.404 |
162 | 162 | 0.679 |
163 | 163 | 0.379 |
164 | 164 | 0.436 |
165 | 165 | 0.0787 |
166 | 166 | 0.952 |
167 | 167 | 0.85 |
168 | 168 | 0.0441 |
169 | 169 | 0.012 |
17 | 17 | 0.312 |
18 | 18 | 0.509 |
19 | 19 | 0.284 |
2 | 2 | 0.207 |
20 | 20 | 0.498 |
21 | 21 | 0.346 |
22 | 22 | 0.211 |
23 | 23 | 0.0707 |
24 | 24 | 0.0321 |
25 | 25 | 0.254 |
26 | 26 | 0.296 |
27 | 27 | 0.0868 |
28 | 28 | 0.459 |
29 | 29 | 0.585 |
3 | 3 | 0.0772 |
30 | 30 | 0.947 |
31 | 31 | 0.481 |
32 | 32 | 0.721 |
33 | 33 | 0.586 |
34 | 34 | 0.265 |
35 | 35 | 0.223 |
36 | 36 | 0.47 |
37 | 37 | 0.175 |
38 | 38 | 0.305 |
39 | 39 | 0.994 |
4 | 4 | 0.936 |
40 | 40 | 0.439 |
41 | 41 | 0.0979 |
42 | 42 | 0.246 |
43 | 43 | 0.16 |
44 | 44 | 0.415 |
45 | 45 | 0.361 |
46 | 46 | 0.132 |
47 | 47 | 0.181 |
48 | 48 | 0.258 |
49 | 49 | 0.124 |
5 | 5 | 0.153 |
50 | 50 | 0.91 |
51 | 51 | 0.435 |
52 | 52 | 0.52 |
53 | 53 | 0.129 |
54 | 54 | 0.257 |
55 | 55 | 0.12 |
56 | 56 | 0.233 |
57 | 57 | 0.755 |
58 | 58 | 0.0628 |
59 | 59 | 0.0372 |
6 | 6 | 0.652 |
60 | 60 | 0.0701 |
61 | 61 | 0.226 |
62 | 62 | 0.0192 |
63 | 63 | 0.503 |
64 | 64 | 0.375 |
65 | 65 | 0.154 |
66 | 66 | 0.678 |
67 | 67 | 0.287 |
68 | 68 | 0.243 |
69 | 69 | 0.323 |
7 | 7 | 0.204 |
70 | 70 | 0.0792 |
71 | 71 | 0.102 |
72 | 72 | 0.25 |
73 | 73 | 0.369 |
74 | 74 | 0.736 |
75 | 75 | 0.092 |
76 | 76 | 0.563 |
77 | 77 | 0.53 |
78 | 78 | 0.251 |
79 | 79 | 0.939 |
8 | 8 | 0.356 |
80 | 80 | 0.0112 |
81 | 81 | 0.259 |
82 | 82 | 0.0435 |
83 | 83 | 0.999 |
84 | 84 | 0.48 |
85 | 85 | 0.162 |
86 | 86 | 0.138 |
87 | 87 | 0.62 |
88 | 88 | 0.538 |
89 | 89 | 0.255 |
9 | 9 | 0.208 |
90 | 90 | 0.03 |
91 | 91 | 0.357 |
92 | 92 | 0.0769 |
93 | 93 | 0.309 |
94 | 94 | 0.127 |
95 | 95 | 0.556 |
96 | 96 | 0.0628 |
97 | 97 | 0.806 |
98 | 98 | 0.0178 |
99 | 99 | 0.41 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11671
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000281 human whole blood sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000178 (blood)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000179 (haemolymphatic fluid)
0000463 (organism substance)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0002390 (hematopoietic system)
0004535 (cardiovascular system)
0002193 (hemolymphoid system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0010053 (human blood - adult sample)
0000004 (tissue sample)
0000281 (human whole blood sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
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