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MacroAPE 1083:8-TBTSTGTBTGC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;330.911;1.153;1.153;819.783!2;171.797;281.332;341.288;358.583!3;141.819;1.153;285.944;724.084!4;217.917;364.348;436.987;134.901!5;438.14;88....")
 
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01!10534-107G3;0.771759!10429-106D6;0.489733!10464-106H5;0.525288!10827-111C8;0.456685!10789-110H6;0.537409!10828-111C9;0.666738!10788-110H5;0.683472!10792-110H9;0.963125!10765-110E9;0.869265!10829-111D1;0.822156!10830-111D2;0.966719!10831-111D3;0.97064!10832-111D4;0.758859!10833-111D5;0.463503!10764-110E8;0.437392!10770-110F5;0.310578!10399-106A3;0.612705!10400-106A4;0.914409!10405-106A9;0.935653!10834-111D6;0.931839!10835-111D7;0.641499!10836-111D8;0.993965!10837-111D9;0.998783!10699-109G6;0.903293!10802-111A1;0.672508!10796-110I4;0.360462!10010-101C1;0.345496!10810-111A9;0.117174!10421-106C7;0.494051!10708-109H6;0.277528!12235-129G3;0.0889871!12236-129G4;0.0220796!12237-129G5;0.588536!10167-103B5;0.0561384!10151-102I7;0.000291217!10428-106D5;8.54263e-05!10795-110I3;0.564093!10805-111A4;0.707461!10052-101G7;0.0702565!10189-103D9;0.201873!10589-108D4;0.336888!10425-106D2;0.00775587!10427-106D4;0.79517!10702-109G9;0.778567!10432-106D9;0.529565!10496-107C1;0.0680858!10718-109I7;0.239878!10011-101C2;0.153762!10053-101G8;0.167479!10686-109F2;0.256936!10084-102B3;0.723235!10012-101C3;0.000180357!10085-102B4;0.000109859!10482-107A5;0.000353806!10419-106C5;0.612755!10080-102A8;0.0953295!10760-110E4;0.733625!10709-109H7;0.18545!10710-109H8;0.0169869!10703-109H1;0.258738!10719-109I8;0.190551!10642-109A3;0.705654!10177-103C6;0.00895706!10164-103B2;2.04723e-05!10173-103C2;0.000103501!10166-103B4;3.55002e-05!10083-102B2;8.0691e-05!10188-103D8;0.00012923!10552-107I3;0.000445732!10553-107I4;0.266796!10013-101C4;0.252026!10536-107G5;0.122618!10618-108G6;0.450435!10423-106C9;0.439526!10785-110H2;0.122263!12238-129G6;0.439632!12239-129G7;0.388198!12240-129G8;0.459125!10416-106C2;0.212352!10801-110I9;0.141195!10766-110F1;0.889146!10824-111C5;0.782575!10825-111C6;0.944978!10826-111C7;0.954412!10454-106G4;0.891676!10409-106B4;0.543758!10638-108I8;0.303801!10636-108I6;0.434448!10513-107D9;0.421241!10420-106C6;0.228159!10082-102B1;0.634951!10014-101C5;0.25716!10070-101I7;0.132748!10452-106G2;0.124185!10453-106G3;0.0568924!10449-106F8;0.0488766!10042-101F6;0.0500842!10069-101I6;0.00198913!10193-103E4;0.301537!10631-108I1;0.000123639!10438-106E6;0.857831!10488-107B2;0.599296!10196-103E7;0.432242!10071-101I8;0.0193072!10071-101I8;0.134949!10041-101F5;0.000274329!10451-106G1;0.150849!10450-106F9;0.602297!10604-108F1;0.69949!10605-108F2;0.274323!10606-108F3;0.112658!10603-108E9;0.225147!10497-107C2;0.126994!10448-106F7;0.12336!10643-109A4;0.123291!10426-106D3;0.647179!10431-106D8;0.0180264!10197-103E8;0.158653!10443-106F2;0.279145!10815-111B5;0.824604!10816-111B6;0.228756!10817-111B7;0.230835!10015-101C6;0.223565!10410-106B5;0.818117!10054-101G9;0.681261!10758-110E2;0.00875063!10711-109H9;0.00708608!10040-101F4;0.308487!10470-106I2;0.000320348!10415-106C1;0.0865365!10198-103E9;0.0915927!10614-108G2;0.20878!10612-108F9;0.19412!10549-107H9;0.176554!10615-108G3;0.613712!10487-107B1;0.323951!10433-106E1;0.276718!10688-109F4;0.184819!10444-106F3;0.00490628!10444-106F3;0.531391!10485-107A8;0.487745!10413-106B8;0.0247618!10175-103C4;0.202514!10161-103A8;9.77147e-05!12131-128D7;8.73812e-05!10624-108H3;0.962422!10712-109I1;0.668747!10205-103F7;0.835108!10206-103F8;0.080609!10207-103F9;0.0819437!10050-101G5;0.128423!10051-101G6;0.555943!10016-101C7;0.0728571!10046-101G1;0.199215!10778-110G4;0.0904057!10633-108I3;0.821221!10818-111B8;0.197358!10819-111B9;0.243721!10820-111C1;0.320239!10484-107A7;0.29487!10808-111A7;0.490041!10169-103B7;0.360422!10153-102I9;0.000212536!13425-144D5;0.000119541!13433-144E4;0.715311!13437-144E8;0.524277!11904-125F5;0.406488!11905-125F6;0.514943!10039-101F3;0.264091!10791-110H8;0.000149418!10017-101C8;0.0783025!10045-101F9;0.997359!10509-107D5;0.668534!10839-111E2;0.0304725!10692-109F8;0.691766!10079-102A7;0.119583!10078-102A6;0.143295!10721-110A1;0.237719!10569-108B2;0.135522!10570-108B3;0.774102!10571-108B4;0.713239!10647-109A8;0.869595!10752-110D5;0.966182!10782-110G8;0.489488!10726-110A6;0.0789733!10018-101C9;0.00124212!10086-102B5;0.23165!10182-103D2;0.455009!10165-103B3;3.095e-05!10499-107C4;3.80612e-05!10408-106B3;0.0374387!10019-101D1;0.349326!10068-101I5;0.567457!10075-102A3;0.317403!10077-102A5;0.899809!10727-110A7;0.748565!10775-110G1;0.497997!10412-106B7;0.874508!12231-129F8;0.0374624!12232-129F9;0.114671!12233-129G1;0.013663!12234-129G2;0.0172544!10414-106B9;0.0471333!10170-103B8;0.546352!10183-103D3;0.000145749!10150-102I6;4.6557e-05!10174-103C3;2.66832e-05!10155-103A2;7.07311e-05!10038-101F2;6.69716e-05!10838-111E1;0.000194128!10759-110E3;0.528363!10514-107E1;0.0191492!10465-106H6;0.934302!10691-109F7;0.798278!10843-111E6;0.246878!10844-111E7;0.533745!11747-123G1;0.0571978!11748-123G2;0.0958213!11749-123G3;0.28366!11750-123G4;0.431142!11751-123G5;0.197904!11840-124H4;0.396915!11752-123G6;0.701207!11753-123G7;0.435738!11754-123G8;0.800509!11755-123G9;0.318379!11756-123H1;0.0281334!11833-124G6;0.232896!11760-123H5;0.708761!11836-124G9;0.391582!11758-123H3;0.397438!11835-124G8;0.618714!11762-123H7;0.545327!11838-124H2;0.694234!11757-123H2;0.865268!11759-123H4;0.511153!11761-123H6;0.438292!11842-124H6;0.500258!11837-124H1;0.540264!10568-108B1;0.64562!13230-141I8;0.393584!13231-141I9;0.702842!10696-109G3;0.599256!10493-107B7;0.792797!10494-107B8;0.210741!10850-111F4;0.298549!10851-111F5;0.181653!10852-111F6;0.084702!10853-111F7;0.673017!10854-111F8;0.0286877!10855-111F9;0.206481!10856-111G1;0.154886!10847-111F1;0.249625!10846-111E9;0.170367!10848-111F2;0.183958!10845-111E8;0.218467!10857-111G2;0.983398!10858-111G3;0.320777!10156-103A3;0.66678!11901-125F2;4.6266e-05!11902-125F3;0.76309!11903-125F4;0.240638!10689-109F5;0.5217!10648-109A9;0.157452!10784-110H1;0.756051!10744-110C6;0.0854297!10772-110F7;0.45425!10474-106I6;0.912794!10600-108E6;0.571326!10684-109E9;0.734302!12226-129F3;0.599932!12227-129F4;0.114255!10508-107D4;0.507022!10539-107G8;0.00144633!10607-108F4;0.00605181!10555-107I6;0.447362!10774-110F9;0.0181731!10637-108I7;0.507025!10663-109C6;0.755808!10728-110A8;0.205569!10729-110A9;0.686616!10430-106D7;0.712849!10730-110B1;0.228096!10813-111B3;0.884631!10812-111B2;0.793642!10037-101F1;0.644943!10172-103C1;0.000268325!10163-103B1;7.21351e-06!10076-102A4;1.86701e-05!10073-102A1;0.000411121!10036-101E9;0.000479953!10195-103E6;0.000183155!10277-104E7;0.000373375!10434-106E2;0.0376981!10550-107I1;0.00703759!10545-107H5;0.352327!10544-107H4;0.013551!10704-109H2;0.309593!10510-107D6;0.846549!10558-107I9;0.679681!10020-101D2;0.230786!10732-110B3;0.0652268!10049-101G4;0.186452!10698-109G5;0.723603!10437-106E5;0.800341!10417-106C3;0.123619!10035-101E8;0.595085!10171-103B9;0.000180501!10157-103A4;6.21683e-05!10034-101E7;1.45367e-05!10072-101I9;0.000218507!10199-103F1;0.000294018!10200-103F2;0.372122!10697-109G4;0.179349!10723-110A3;0.947365!10179-103C8;0.256165!10160-103A7;0.000928811!10180-103C9;0.00101407!10162-103A9;0.0458849!10021-101D3;0.000845265!10840-111E3;0.698809!10706-109H4;0.86629!10033-101E6;0.00456671!10032-101E5;0.000168014!10490-107B4;0.000261981!10439-106E7;0.0863576!10022-101D4;0.354387!10176-103C5;0.219148!10469-106I1;0.00011508!10067-101I4;0.388496!10411-106B6;0.032634!10471-106I3;0.91104!10030-101E3;0.211005!10475-106I7;0.00774482!10787-110H4;0.831394!10477-106I9;0.576416!10695-109G2;0.997835!11771-123I7;0.847961!11772-123I8;0.400636!11773-123I9;0.176234!10093-102C3;0.795812!10442-106F1;0.631205!10442-106F1;0.21202!10201-103F3;0.26925!10639-108I9;0.0125997!11843-124H7;0.239302!11841-124H5;0.640716!10693-109F9;0.0636814!10436-106E4;0.127057!10483-107A6;0.179259!10282-104F3;0.418954!10023-101D5;0.0161153!10066-101I3;0.273259!10065-101I2;0.466315!10800-110I8;0.190224!10610-108F7;0.900443!10841-111E4;0.144215!10541-107H1;0.707446!10842-111E5;0.914505!10562-108A4;0.196239!10024-101D6;0.0997618!10064-101I1;0.13875!10609-108F6;0.297718!10048-101G3;0.803175!10781-110G7;0.192483!10181-103D1;0.868125!10159-103A6;1.14003e-05!10056-101H2;4.37046e-05!10737-110B8;0.00280957!10025-101D7;0.42708!10044-101F8;0.947689!10424-106D1;0.835082!10463-106H4;0.74197!10616-108G4;0.263444!10486-107A9;0.427335!10062-101H8;0.0726833!10202-103F4;0.433112!10158-103A5;0.999843!10441-106E9;0.000902873!10031-101E4;0.642889!10063-101H9;0.000156801!10063-101H9;0.000163118!11763-123H8;0.0647093!11765-123I1;0.467726!11768-123I4;0.413501!10807-111A6;0.450765!10790-110H7;0.724473!10798-110I6;0.653053!10786-110H3;0.961503!10591-108D6;0.742876!10593-108D8;0.336994!10590-108D5;0.446873!10026-101D8;0.533875!10096-102C6;0.453367!10168-103B6;0.617626!10154-103A1;0.000541766!10209-103G2;9.74057e-05!10061-101H7;0.540725!10027-101D9;0.30369!10043-101F7;0.818379!10783-110G9;0.938821!10028-101E1;0.757241!10060-101H6;0.829493!10203-103F5;0.434258!10059-101H5;0.469486!10047-101G2;0.227144!10029-101E2;0.900238!10058-101H4;0.979449!10418-106C4;0.345501!10492-107B6;0.886832!10694-109G1;0.175617!10797-110I5;0.86269!10057-101H3;0.279264!10100-102D1;0.478501!10055-101H1;0.409541!10204-103F6;0.242706!10191-103E2;0.663416!10563-108A5;0.330795
|name=8-TBTSTGTBTGC,CNhs12311,BestGuess:DBP.p2.SwissRegulon.nucfreq(0.737151610515702),T:1153.0(26.12%),B:8310.7(18.91%),P:1e-31
|name=8-TBTSTGTBTGC,CNhs12311,BestGuess:DBP.p2.SwissRegulon.nucfreq(0.737151610515702),T:1153.0(26.12%),B:8310.7(18.91%),P:1e-31
|tomtom_result=AFT1#MA0269.1;0;0.00100743;0.479537;0.959074;11;TTTGTGTTTGC;TTACATATTGCACCCGATTGG;+!FHL1#MA0295.1;-6;0.00322702;1.53606;1;5;TTTGTGTTTGC;TTTGCGTC;-!DAL82#MA0291.1;-4;0.00509419;2.42484;1;7;TTTGTGTTTGC;AATGTGCGC;+!MAC1#MA0326.1;-6;0.00687764;3.27376;1;5;TTTGTGTTTGC;TTTGCTCA;+!id1#MA0120.1;0;0.00897354;4.2714;1;11;TTTGTGTTTGC;TTTTCCTTTTCG;+!HMG-I/Y#MA0045.1;3;0.00922242;4.38987;1;11;TTTGTGTTTGC;GTTTTTCCATTTGTTG;-!MGA1#MA0336.1;1;0.00956642;4.55361;1;11;TTTGTGTTTGC;TTTAGAGTGTTCTATAGTCCT;-!slbo#MA0244.1;-6;0.011101;5.2841;1;5;TTTGTGTTTGC;TTTGCAAT;-!hb#MA0049.1;-1;0.0137026;6.52243;1;10;TTTGTGTTTGC;TTTTTTATGC;-
}}
}}

Latest revision as of 12:18, 7 September 2012

Full Name: 8-TBTSTGTBTGC,CNhs12311,BestGuess:DBP.p2.SwissRegulon.nucfreq(0.737151610515702),T:1153.0(26.12%),B:8310.7(18.91%),P:1e-31

Motif matrix
POACGT
1330.9111.1531.153819.783
2171.797281.332341.288358.583
3141.8191.153285.944724.084
4217.917364.348436.987134.901
5438.1488.7813.459622.62
6182.174216.764476.189277.873
7250.2011.1531.153900.493
8199.469275.567288.25389.714
91.1531.1538.0711142.623
101.1531.1531027.323123.371
111.1531149.5411.1531.153

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
AFT1#MA0269.100.001007430.4795370.95907411TTTGTGTTTGCTTACATATTGCACCCGATTGG+
FHL1#MA0295.1-60.003227021.5360615TTTGTGTTTGCTTTGCGTC-
DAL82#MA0291.1-40.005094192.4248417TTTGTGTTTGCAATGTGCGC+
MAC1#MA0326.1-60.006877643.2737615TTTGTGTTTGCTTTGCTCA+
id1#MA0120.100.008973544.2714111TTTGTGTTTGCTTTTCCTTTTCG+
HMG-I/Y#MA0045.130.009222424.38987111TTTGTGTTTGCGTTTTTCCATTTGTTG-
MGA1#MA0336.110.009566424.55361111TTTGTGTTTGCTTTAGAGTGTTCTATAGTCCT-
slbo#MA0244.1-60.0111015.284115TTTGTGTTTGCTTTGCAAT-
hb#MA0049.1-10.01370266.52243110TTTGTGTTTGCTTTTTTATGC-
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