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MacroAPE 1083:3-GCGGGAGGGAGT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;79.86;104.06;959.53;66.55!2;108.9;839.74;141.57;119.79!3;99.22;116.16;891.77;102.85!4;76.23;100.43;963.16;70.18!5;81.07;108.9;969.21;50.82!6...")
 
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10H6;0.87822!10828-111C9;0.623663!10788-110H5;0.322101!10792-110H9;0.548895!10765-110E9;0.622923!10829-111D1;0.728689!10830-111D2;0.929563!10831-111D3;0.82457!10832-111D4;0.833071!10833-111D5;0.982971!10764-110E8;0.778183!10770-110F5;0.368873!10399-106A3;0.499435!10400-106A4;0.904325!10405-106A9;0.946457!10834-111D6;0.997481!10835-111D7;0.885573!10836-111D8;0.673212!10837-111D9;0.65196!10699-109G6;0.560162!10802-111A1;0.951016!10796-110I4;0.902244!10010-101C1;0.967774!10810-111A9;0.284995!10421-106C7;0.439858!10708-109H6;0.572998!12235-129G3;0.627609!12236-129G4;0.29318!12237-129G5;0.77481!10167-103B5;0.32687!10151-102I7;0.090329!10428-106D5;0.0646185!10795-110I3;0.604461!10805-111A4;0.701196!10052-101G7;0.880899!10189-103D9;0.156224!10589-108D4;0.0112855!10425-106D2;0.693524!10427-106D4;0.0923307!10702-109G9;0.923466!10432-106D9;0.872773!10496-107C1;0.743429!10718-109I7;0.510705!10011-101C2;0.563947!10053-101G8;0.155117!10686-109F2;0.359195!10084-102B3;0.412223!10012-101C3;0.165129!10085-102B4;0.0870393!10482-107A5;0.105909!10419-106C5;0.815308!10080-102A8;0.991941!10760-110E4;0.628042!10709-109H7;0.84001!10710-109H8;0.742796!10703-109H1;0.466829!10719-109I8;0.32916!10642-109A3;0.194838!10177-103C6;0.068485!10164-103B2;0.0794158!10173-103C2;0.060822!10166-103B4;0.0812299!10083-102B2;0.0506983!10188-103D8;0.106751!10552-107I3;0.081262!10553-107I4;0.452841!10013-101C4;0.606961!10536-107G5;0.091435!10618-108G6;0.867245!10423-106C9;0.463948!10785-110H2;0.409676!12238-129G6;0.291781!12239-129G7;0.184225!12240-129G8;0.526466!10416-106C2;0.317013!10801-110I9;0.92196!10766-110F1;0.484055!10824-111C5;0.624938!10825-111C6;0.326648!10826-111C7;0.322806!10454-106G4;0.339838!10409-106B4;0.672072!10638-108I8;0.770047!10636-108I6;0.859317!10513-107D9;0.46345!10420-106C6;0.437657!10082-102B1;0.397057!10014-101C5;0.381953!10070-101I7;0.322974!10452-106G2;0.225182!10453-106G3;0.341365!10449-106F8;0.244654!10042-101F6;0.205305!10069-101I6;0.176711!10193-103E4;0.508123!10631-108I1;0.17985!10438-106E6;0.890022!10488-107B2;0.58602!10196-103E7;0.0913204!10071-101I8;0.0942024!10071-101I8;0.12701!10041-101F5;0.0652665!10451-106G1;0.0698755!10450-106F9;0.757557!10604-108F1;0.323584!10605-108F2;0.567521!10606-108F3;0.0959558!10603-108E9;0.620219!10497-107C2;0.44248!10448-106F7;0.151346!10643-109A4;0.933925!10426-106D3;0.0358979!10431-106D8;0.920413!10197-103E8;0.975394!10443-106F2;0.29642!10815-111B5;0.516119!10816-111B6;0.568444!10817-111B7;0.900825!10015-101C6;0.647825!10410-106B5;0.38284!10054-101G9;0.637627!10758-110E2;0.109709!10711-109H9;0.206906!10040-101F4;0.894664!10470-106I2;0.0916691!10415-106C1;0.609492!10198-103E9;0.253507!10614-108G2;0.308479!10612-108F9;0.0663695!10549-107H9;0.828627!10615-108G3;0.342155!10487-107B1;0.329403!10433-106E1;0.975676!10688-109F4;0.255032!10444-106F3;0.796847!10444-106F3;0.351582!10485-107A8;0.437787!10413-106B8;0.186355!10175-103C4;0.421692!10161-103A8;0.105804!12131-128D7;0.0957518!10624-108H3;0.899301!10712-109I1;0.101362!10205-103F7;0.442543!10206-103F8;0.212748!10207-103F9;0.322023!10050-101G5;0.226271!10051-101G6;0.383511!10016-101C7;0.54145!10046-101G1;0.75676!10778-110G4;0.568103!10633-108I3;0.159814!10818-111B8;0.257768!10819-111B9;0.0559022!10820-111C1;0.0807182!10484-107A7;0.0875277!10808-111A7;0.30235!10169-103B7;0.796377!10153-102I9;0.0705863!13425-144D5;0.0681297!13433-144E4;0.526685!13437-144E8;0.455433!11904-125F5;0.653649!11905-125F6;0.860054!10039-101F3;0.978691!10791-110H8;0.0847788!10017-101C8;0.838117!10045-101F9;0.831387!10509-107D5;0.293227!10839-111E2;0.986372!10692-109F8;0.127459!10079-102A7;0.833879!10078-102A6;0.598169!10721-110A1;0.469174!10569-108B2;0.25687!10570-108B3;0.106982!10571-108B4;0.277078!10647-109A8;0.456389!10752-110D5;0.976514!10782-110G8;0.742704!10726-110A6;0.300462!10018-101C9;0.603511!10086-102B5;0.449374!10182-103D2;0.231493!10165-103B3;0.15143!10499-107C4;0.116876!10408-106B3;0.774726!10019-101D1;0.284784!10068-101I5;0.419592!10075-102A3;0.10104!10077-102A5;0.29143!10727-110A7;0.982096!10775-110G1;0.659135!10412-106B7;0.97108!12231-129F8;0.0429133!12232-129F9;0.878093!12233-129G1;0.83278!12234-129G2;0.821216!10414-106B9;0.330983!10170-103B8;0.70661!10183-103D3;0.0946447!10150-102I6;0.0694692!10174-103C3;0.0729765!10155-103A2;0.161356!10038-101F2;0.0906333!10838-111E1;0.148427!10759-110E3;0.102424!10514-107E1;0.74018!10465-106H6;0.412242!10691-109F7;0.550075!10843-111E6;0.669967!10844-111E7;0.272752!11747-123G1;0.202622!11748-123G2;0.48119!11749-123G3;0.226758!11750-123G4;0.803763!11751-123G5;0.612015!11840-124H4;0.988033!11752-123G6;0.61937!11753-123G7;0.0681523!11754-123G8;0.66834!11755-123G9;0.727927!11756-123H1;0.904633!11833-124G6;0.942427!11760-123H5;0.0413869!11836-124G9;0.885784!11758-123H3;0.772538!11835-124G8;0.350814!11762-123H7;0.135261!11838-124H2;0.895527!11757-123H2;0.451307!11759-123H4;0.890438!11761-123H6;0.384049!11842-124H6;0.594927!11837-124H1;0.264943!10568-108B1;0.349045!13230-141I8;0.587637!13231-141I9;0.545605!10696-109G3;0.46941!10493-107B7;0.260605!10494-107B8;0.64794!10850-111F4;0.910042!10851-111F5;0.422675!10852-111F6;0.827907!10853-111F7;0.161998!10854-111F8;0.46914!10855-111F9;0.794153!10856-111G1;0.555954!10847-111F1;0.801237!10846-111E9;0.831007!10848-111F2;0.852731!10845-111E8;0.950634!10857-111G2;0.616618!10858-111G3;0.609848!10156-103A3;0.142588!11901-125F2;0.0736868!11902-125F3;0.491736!11903-125F4;0.194593!10689-109F5;0.169755!10648-109A9;0.986497!10784-110H1;0.0492828!10744-110C6;0.806813!10772-110F7;0.370529!10474-106I6;0.694253!10600-108E6;0.362887!10684-109E9;0.820016!12226-129F3;0.175166!12227-129F4;0.20447!10508-107D4;0.502506!10539-107G8;0.0805875!10607-108F4;0.0324389!10555-107I6;0.927022!10774-110F9;0.0846045!10637-108I7;0.947015!10663-109C6;0.119107!10728-110A8;0.155126!10729-110A9;0.119438!10430-106D7;0.368353!10730-110B1;0.766913!10813-111B3;0.142065!10812-111B2;0.949349!10037-101F1;0.611322!10172-103C1;0.0940944!10163-103B1;0.0771764!10076-102A4;0.0616315!10073-102A1;0.084338!10036-101E9;0.0525748!10195-103E6;0.114611!10277-104E7;0.093893!10434-106E2;0.618401!10550-107I1;0.743693!10545-107H5;0.841894!10544-107H4;0.776262!10704-109H2;0.313272!10510-107D6;0.235875!10558-107I9;0.0703887!10020-101D2;0.0915418!10732-110B3;0.0461078!10049-101G4;0.395843!10698-109G5;0.600841!10437-106E5;0.406406!10417-106C3;0.820874!10035-101E8;0.49559!10171-103B9;0.106471!10157-103A4;0.142644!10034-101E7;0.0667468!10072-101I9;0.112665!10199-103F1;0.0361195!10200-103F2;0.905657!10697-109G4;0.432888!10723-110A3;0.178314!10179-103C8;0.773375!10160-103A7;0.106014!10180-103C9;0.0499443!10162-103A9;0.051811!10021-101D3;0.0206384!10840-111E3;0.734696!10706-109H4;0.673873!10033-101E6;0.647934!10032-101E5;0.193365!10490-107B4;0.112631!10439-106E7;0.976942!10022-101D4;0.908975!10176-103C5;0.13464!10469-106I1;0.0935438!10067-101I4;0.140803!10411-106B6;0.0280509!10471-106I3;0.429754!10030-101E3;0.682241!10475-106I7;0.0767651!10787-110H4;0.3078!10477-106I9;0.817678!10695-109G2;0.0978457!11771-123I7;0.385614!11772-123I8;0.942221!11773-123I9;0.971284!10093-102C3;0.843053!10442-106F1;0.450292!10442-106F1;0.486037!10201-103F3;0.555039!10639-108I9;0.0850379!11843-124H7;0.63737!11841-124H5;0.467058!10693-109F9;0.743832!10436-106E4;0.0532908!10483-107A6;0.898429!10282-104F3;0.589804!10023-101D5;0.989861!10066-101I3;0.9255!10065-101I2;0.720904!10800-110I8;0.234935!10610-108F7;0.340563!10841-111E4;0.517194!10541-107H1;0.663125!10842-111E5;0.255549!10562-108A4;0.194575!10024-101D6;0.268235!10064-101I1;0.474573!10609-108F6;0.200606!10048-101G3;0.744638!10781-110G7;0.0893281!10181-103D1;0.345283!10159-103A6;0.113712!10056-101H2;0.0269069!10737-110B8;0.2171!10025-101D7;0.761!10044-101F8;0.513339!10424-106D1;0.44003!10463-106H4;0.739226!10616-108G4;0.631557!10486-107A9;0.934661!10062-101H8;0.987987!10202-103F4;0.219952!10158-103A5;0.369879!10441-106E9;0.193067!10031-101E4;0.570839!10063-101H9;0.13113!10063-101H9;0.0495453!11763-123H8;0.183736!11765-123I1;0.701016!11768-123I4;0.763983!10807-111A6;0.455039!10790-110H7;0.742203!10798-110I6;0.971305!10786-110H3;0.878791!10591-108D6;0.41227!10593-108D8;0.952347!10590-108D5;0.593557!10026-101D8;0.724333!10096-102C6;0.267901!10168-103B6;0.697587!10154-103A1;0.159113!10209-103G2;0.0770822!10061-101H7;0.710476!10027-101D9;0.176766!10043-101F7;0.280995!10783-110G9;0.201583!10028-101E1;0.478846!10060-101H6;0.719646!10203-103F5;0.165688!10059-101H5;0.687725!10047-101G2;0.600496!10029-101E2;0.393019!10058-101H4;0.451686!10418-106C4;0.384333!10492-107B6;0.0679887!10694-109G1;0.531682!10797-110I5;0.730664!10057-101H3;0.411336!10100-102D1;0.583896!10055-101H1;0.0283986!10204-103F6;0.0390742!10191-103E2;0.265229!10563-108A5;0.395955
|name=3-GCGGGAGGGAGT,BestGuess:E2F6_f1_HMv8(0.743777576082714),T:1210.0(22.36%),B:6124.1(14.24%),P:1e-50
|name=3-GCGGGAGGGAGT,BestGuess:E2F6_f1_HMv8(0.743777576082714),T:1210.0(22.36%),B:6124.1(14.24%),P:1e-50
|tomtom_result=DAL81#MA0290.1;7;0.000214599;0.102149;0.204299;12;GCGGGAGGGAGT;AAAAGCCGCGGGCGGGATT;+!SP1#MA0079.2;0;0.000923553;0.439611;0.439611;10;GCGGGAGGGAGT;GGGGGCGGGG;-!UGA3#MA0410.1;-2;0.00371654;1.76907;1;8;GCGGGAGGGAGT;CGGCGGGA;+!SP1#MA0079.2;0;0.00430597;2.04964;1;10;GCGGGAGGGAGT;GGGGCGGGGT;+!opa#MA0456.1;2;0.00570948;2.71771;1;10;GCGGGAGGGAGT;CAGCGGGGGGTC;-!GAL4#MA0299.1;-1;0.00855266;4.07106;1;11;GCGGGAGGGAGT;CGGGGAACAGTACTC;+!SPI1#MA0080.2;-5;0.00894831;4.25939;1;7;GCGGGAGGGAGT;AGGAAGT;+!Pax4#MA0068.1;1;0.0102423;4.87535;1;12;GCGGGAGGGAGT;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!TFAP2A#MA0003.1;0;0.0103813;4.94149;1;9;GCGGGAGGGAGT;GCCCGGGGG;+!GABPA#MA0062.2;0;0.0132928;6.32739;1;11;GCGGGAGGGAGT;CCGGAAGTGGC;+!Egr1#MA0162.1;-1;0.0136985;6.5205;1;11;GCGGGAGGGAGT;TGCGTGGGCGT;+!Macho-1#MA0118.1;-1;0.0145387;6.92044;1;9;GCGGGAGGGAGT;TGGGGGGTC;+!Trl#MA0205.1;0;0.0146324;6.965;1;10;GCGGGAGGGAGT;GAGAGAGCAA;-!MIG1#MA0337.1;0;0.0156997;7.47307;1;7;GCGGGAGGGAGT;GCGGGGG;-!btd#MA0443.1;1;0.0193658;9.21813;1;9;GCGGGAGGGAGT;AGGGGGCGGA;+
}}
}}

Latest revision as of 12:11, 7 September 2012

Full Name: 3-GCGGGAGGGAGT,BestGuess:E2F6_f1_HMv8(0.743777576082714),T:1210.0(22.36%),B:6124.1(14.24%),P:1e-50

Motif matrix
POACGT
179.86104.06959.5366.55
2108.9839.74141.57119.79
399.22116.16891.77102.85
476.23100.43963.1670.18
581.07108.9969.2150.82
6865.15116.16129.4799.22
791.9676.23958.3283.49
893.1795.59925.6595.59
978.65129.47937.7564.13
10869.99100.43134.31105.27
1194.38116.16909.9289.54
12119.79148.83143.99797.39

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
DAL81#MA0290.170.0002145990.1021490.20429912GCGGGAGGGAGTAAAAGCCGCGGGCGGGATT+
SP1#MA0079.200.0009235530.4396110.43961110GCGGGAGGGAGTGGGGGCGGGG-
UGA3#MA0410.1-20.003716541.7690718GCGGGAGGGAGTCGGCGGGA+
SP1#MA0079.200.004305972.04964110GCGGGAGGGAGTGGGGCGGGGT+
opa#MA0456.120.005709482.71771110GCGGGAGGGAGTCAGCGGGGGGTC-
GAL4#MA0299.1-10.008552664.07106111GCGGGAGGGAGTCGGGGAACAGTACTC+
SPI1#MA0080.2-50.008948314.2593917GCGGGAGGGAGTAGGAAGT+
Pax4#MA0068.110.01024234.87535112GCGGGAGGGAGTGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
TFAP2A#MA0003.100.01038134.9414919GCGGGAGGGAGTGCCCGGGGG+
GABPA#MA0062.200.01329286.32739111GCGGGAGGGAGTCCGGAAGTGGC+
Egr1#MA0162.1-10.01369856.5205111GCGGGAGGGAGTTGCGTGGGCGT+
Macho-1#MA0118.1-10.01453876.9204419GCGGGAGGGAGTTGGGGGGTC+
Trl#MA0205.100.01463246.965110GCGGGAGGGAGTGAGAGAGCAA-
MIG1#MA0337.100.01569977.4730717GCGGGAGGGAGTGCGGGGG-
btd#MA0443.110.01936589.2181319GCGGGAGGGAGTAGGGGGCGGA+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:3-GCGGGAGGGAGT&oldid=2133566"