MacroAPE 1083:6-AAAAACGCCC: Difference between revisions
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(Created page with "{{Macroape_1083
|PWM=PO;A;C;G;T!1;648.85;96.9;114.0;90.25!2;695.4;76.95;109.25;68.4!3;739.1;91.2;54.15;65.55!4;699.2;111.15;68.4;71.25!5;625.1;104.5;92.15;128.25!6;108.3;626....") |
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G3;0.357757!10493-107B7;0.104217!10494-107B8;0.996449!10850-111F4;0.642693!10851-111F5;0.572529!10852-111F6;0.847451!10853-111F7;0.546767!10854-111F8;0.32877!10855-111F9;0.74028!10856-111G1;0.480346!10847-111F1;0.345281!10846-111E9;0.721096!10848-111F2;0.907765!10845-111E8;0.822234!10857-111G2;0.300197!10858-111G3;0.815537!10156-103A3;0.482381!11901-125F2;0.389067!11902-125F3;0.570122!11903-125F4;0.774641!10689-109F5;0.994991!10648-109A9;0.428225!10784-110H1;0.622708!10744-110C6;0.378686!10772-110F7;0.564799!10474-106I6;0.0699798!10600-108E6;0.0792735!10684-109E9;0.363072!12226-129F3;0.646974!12227-129F4;0.0591613!10508-107D4;0.201034!10539-107G8;0.0748905!10607-108F4;0.53097!10555-107I6;0.212353!10774-110F9;0.181074!10637-108I7;0.331035!10663-109C6;0.98562!10728-110A8;0.928484!10729-110A9;0.562354!10430-106D7;0.0264795!10730-110B1;0.784906!10813-111B3;0.146618!10812-111B2;0.706271!10037-101F1;0.592822!10172-103C1;0.347687!10163-103B1;0.241765!10076-102A4;0.397057!10073-102A1;0.404456!10036-101E9;0.570713!10195-103E6;0.376945!10277-104E7;0.498814!10434-106E2;0.992889!10550-107I1;0.130909!10545-107H5;0.108117!10544-107H4;0.74836!10704-109H2;0.801799!10510-107D6;0.0945379!10558-107I9;0.205484!10020-101D2;0.912916!10732-110B3;0.140731!10049-101G4;0.2971!10698-109G5;0.683702!10437-106E5;0.447844!10417-106C3;0.97839!10035-101E8;0.374739!10171-103B9;0.373167!10157-103A4;0.359342!10034-101E7;0.342733!10072-101I9;0.383384!10199-103F1;0.525188!10200-103F2;0.719454!10697-109G4;0.15626!10723-110A3;0.450296!10179-103C8;0.901512!10160-103A7;0.376932!10180-103C9;0.337078!10162-103A9;0.353005!10021-101D3;0.499025!10840-111E3;0.447396!10706-109H4;0.085813!10033-101E6;0.228773!10032-101E5;0.412449!10490-107B4;0.339282!10439-106E7;0.614032!10022-101D4;0.474758!10176-103C5;0.878205!10469-106I1;0.398887!10067-101I4;0.474132!10411-106B6;0.0594332!10471-106I3;0.627272!10030-101E3;0.270479!10475-106I7;0.42062!10787-110H4;0.501055!10477-106I9;0.900074!10695-109G2;0.842077!11771-123I7;0.264024!11772-123I8;0.0620168!11773-123I9;0.416533!10093-102C3;0.705092!10442-106F1;0.353403!10442-106F1;0.110624!10201-103F3;0.036626!10639-108I9;0.431418!11843-124H7;0.188452!11841-124H5;0.321324!10693-109F9;0.375215!10436-106E4;0.21668!10483-107A6;0.425428!10282-104F3;0.752242!10023-101D5;0.366547!10066-101I3;0.1195!10065-101I2;0.0268103!10800-110I8;0.0774238!10610-108F7;0.866915!10841-111E4;0.351605!10541-107H1;0.128562!10842-111E5;0.109673!10562-108A4;0.55273!10024-101D6;0.646353!10064-101I1;0.771709!10609-108F6;0.247733!10048-101G3;0.0666965!10781-110G7;0.140593!10181-103D1;0.0643505!10159-103A6;0.855123!10056-101H2;0.436092!10737-110B8;0.25613!10025-101D7;0.0118732!10044-101F8;0.650231!10424-106D1;0.265368!10463-106H4;0.0883506!10616-108G4;0.155751!10486-107A9;0.582587!10062-101H8;0.28774!10202-103F4;0.0552022!10158-103A5;0.757104!10441-106E9;0.513616!10031-101E4;0.984789!10063-101H9;0.447598!10063-101H9;0.62857!11763-123H8;0.544227!11765-123I1;0.557299!11768-123I4;0.222133!10807-111A6;0.293189!10790-110H7;0.559517!10798-110I6;0.998474!10786-110H3;0.157996!10591-108D6;0.932275!10593-108D8;0.295584!10590-108D5;0.621627!10026-101D8;0.770577!10096-102C6;0.772908!10168-103B6;0.347367!10154-103A1;0.450254!10209-103G2;0.451881!10061-101H7;0.49222!10027-101D9;0.215297!10043-101F7;0.506872!10783-110G9;0.392099!10028-101E1;0.477649!10060-101H6;0.656175!10203-103F5;0.0610741!10059-101H5;0.63148!10047-101G2;0.102907!10029-101E2;0.963662!10058-101H4;0.52479!10418-106C4;0.142402!10492-107B6;0.636785!10694-109G1;0.589573!10797-110I5;0.212791!10057-101H3;0.363322!10100-102D1;0.000142545!10055-101H1;0.634227!10204-103F6;0.230172!10191-103E2;0.693345!10563-108A5;0.0781613 | ||
|name=6-AAAAACGCCC,CNhs11049,BestGuess:ZN384_f1_HM09(0.694433879596684),T:950.0(38.68%),B:12175.3(27.06%),P:1e-35 | |name=6-AAAAACGCCC,CNhs11049,BestGuess:ZN384_f1_HM09(0.694433879596684),T:950.0(38.68%),B:12175.3(27.06%),P:1e-35 | ||
|tomtom_result=NDT80#MA0343.1;11;0.00122566;0.583414;0.325641;10;AAAAACGCCC;TTTCCGGCCACAAAAACGCAA;+!dl_1#MA0022.1;3;0.00134077;0.638204;0.325641;9;AAAAACGCCC;CGGAAAAACCCC;-!TBP#MA0108.2;4;0.00136824;0.651282;0.325641;10;AAAAACGCCC;GTATAAAAGGCGGGG;+!TBP#MA0108.2;4;0.00136824;0.651282;0.325641;10;AAAAACGCCC;GTATAAAAGGCGGGG;+!Pax4#MA0068.1;2;0.0163902;7.80175;1;10;AAAAACGCCC;GAAAAATTTCCCATACTCCACTCCCCCCCC;+!dl_2#MA0023.1;1;0.0170816;8.13084;1;9;AAAAACGCCC;GGAAAACCCC;-!Gamyb#MA0034.1;1;0.0176375;8.39546;1;9;AAAAACGCCC;GACAACCGCC;+ | |||
}} | }} |
Latest revision as of 12:11, 7 September 2012
Full Name: 6-AAAAACGCCC,CNhs11049,BestGuess:ZN384_f1_HM09(0.694433879596684),T:950.0(38.68%),B:12175.3(27.06%),P:1e-35
Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
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|
Sample specificity
The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon
TomTom analysis
<br>Analyst: Michiel de Hoon and Hiroko Ohmiya
Target_ID | Optimal_offset | p-value | E-value | q-value | Overlap | Query consensus | Target consensus | Orientation |
---|---|---|---|---|---|---|---|---|
NDT80#MA0343.1 | 11 | 0.00122566 | 0.583414 | 0.325641 | 10 | AAAAACGCCC | TTTCCGGCCACAAAAACGCAA | + |
dl_1#MA0022.1 | 3 | 0.00134077 | 0.638204 | 0.325641 | 9 | AAAAACGCCC | CGGAAAAACCCC | - |
TBP#MA0108.2 | 4 | 0.00136824 | 0.651282 | 0.325641 | 10 | AAAAACGCCC | GTATAAAAGGCGGGG | + |
TBP#MA0108.2 | 4 | 0.00136824 | 0.651282 | 0.325641 | 10 | AAAAACGCCC | GTATAAAAGGCGGGG | + |
Pax4#MA0068.1 | 2 | 0.0163902 | 7.80175 | 1 | 10 | AAAAACGCCC | GAAAAATTTCCCATACTCCACTCCCCCCCC | + |
dl_2#MA0023.1 | 1 | 0.0170816 | 8.13084 | 1 | 9 | AAAAACGCCC | GGAAAACCCC | - |
Gamyb#MA0034.1 | 1 | 0.0176375 | 8.39546 | 1 | 9 | AAAAACGCCC | GACAACCGCC | + |