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MacroAPE 1083:10-TGTCACTGCG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;87.685;53.534;0.923;780.858!2;39.689;109.837;741.169;32.305!3;0.923;295.36;135.681;491.036!4;35.074;606.411;274.131;7.384!5;729.17;5.538;82....")
 
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7!12184-129A6;0.125062!10809-111A8;0.149079!10597-108E3;0.316701!10717-109I6;0.273678!10455-106G5;0.185167!10534-107G3;0.969188!10429-106D6;0.611363!10464-106H5;0.586138!10827-111C8;0.739199!10789-110H6;0.617209!10828-111C9;0.522926!10788-110H5;0.710893!10792-110H9;0.578312!10765-110E9;0.911441!10829-111D1;0.633988!10830-111D2;0.801687!10831-111D3;0.835665!10832-111D4;0.99585!10833-111D5;0.771426!10764-110E8;0.482369!10770-110F5;0.300128!10399-106A3;0.705437!10400-106A4;0.873448!10405-106A9;0.66582!10834-111D6;0.807416!10835-111D7;0.543818!10836-111D8;0.458257!10837-111D9;0.496579!10699-109G6;0.924073!10802-111A1;0.954141!10796-110I4;0.927343!10010-101C1;0.246075!10810-111A9;0.378241!10421-106C7;0.628378!10708-109H6;0.844468!12235-129G3;0.935107!12236-129G4;0.925955!12237-129G5;0.285692!10167-103B5;0.996894!10151-102I7;0.0758831!10428-106D5;0.095296!10795-110I3;0.8759!10805-111A4;0.890892!10052-101G7;0.455248!10189-103D9;0.458777!10589-108D4;0.345453!10425-106D2;0.683061!10427-106D4;0.784729!10702-109G9;0.88428!10432-106D9;0.329856!10496-107C1;0.0857518!10718-109I7;0.254127!10011-101C2;0.398815!10053-101G8;0.570332!10686-109F2;0.258238!10084-102B3;0.537333!10012-101C3;0.148768!10085-102B4;0.128533!10482-107A5;0.0347139!10419-106C5;0.262867!10080-102A8;0.55976!10760-110E4;0.878129!10709-109H7;0.0526857!10710-109H8;0.335799!10703-109H1;0.349286!10719-109I8;0.621026!10642-109A3;0.261623!10177-103C6;0.85344!10164-103B2;0.0984433!10173-103C2;0.122834!10166-103B4;0.0601846!10083-102B2;0.0750463!10188-103D8;0.122819!10552-107I3;0.155704!10553-107I4;0.180754!10013-101C4;0.206413!10536-107G5;0.762956!10618-108G6;0.858734!10423-106C9;0.287172!10785-110H2;0.205881!12238-129G6;0.0666132!12239-129G7;0.6764!12240-129G8;0.00972008!10416-106C2;0.869395!10801-110I9;0.388075!10766-110F1;0.540702!10824-111C5;0.705297!10825-111C6;0.859315!10826-111C7;0.873823!10454-106G4;0.767755!10409-106B4;0.917164!10638-108I8;0.964587!10636-108I6;0.188168!10513-107D9;0.572925!10420-106C6;0.214574!10082-102B1;0.959645!10014-101C5;0.33016!10070-101I7;0.776481!10452-106G2;0.85488!10453-106G3;0.184092!10449-106F8;0.776695!10042-101F6;0.790789!10069-101I6;0.253525!10193-103E4;0.597158!10631-108I1;0.208927!10438-106E6;0.992045!10488-107B2;0.27391!10196-103E7;0.853072!10071-101I8;0.863273!10071-101I8;0.729026!10041-101F5;0.0302103!10451-106G1;0.332598!10450-106F9;0.692125!10604-108F1;0.798908!10605-108F2;0.97228!10606-108F3;0.914511!10603-108E9;0.882294!10497-107C2;0.536451!10448-106F7;0.360831!10643-109A4;0.142826!10426-106D3;0.04179!10431-106D8;0.315146!10197-103E8;0.187951!10443-106F2;0.94752!10815-111B5;0.181192!10816-111B6;0.273072!10817-111B7;0.370299!10015-101C6;0.262884!10410-106B5;0.960861!10054-101G9;0.623978!10758-110E2;0.586692!10711-109H9;0.604727!10040-101F4;0.54951!10470-106I2;0.105089!10415-106C1;0.0477607!10198-103E9;0.322815!10614-108G2;0.769693!10612-108F9;0.183!10549-107H9;0.0612784!10615-108G3;0.570283!10487-107B1;0.164288!10433-106E1;0.555858!10688-109F4;0.599019!10444-106F3;0.189428!10444-106F3;0.734438!10485-107A8;0.744958!10413-106B8;0.919523!10175-103C4;0.739195!10161-103A8;0.131102!12131-128D7;0.155361!10624-108H3;0.21956!10712-109I1;0.576842!10205-103F7;0.934516!10206-103F8;0.331018!10207-103F9;0.496568!10050-101G5;0.266984!10051-101G6;0.262449!10016-101C7;0.583602!10046-101G1;0.538216!10778-110G4;0.35218!10633-108I3;0.863588!10818-111B8;0.860142!10819-111B9;0.343294!10820-111C1;0.336875!10484-107A7;0.374269!10808-111A7;0.881431!10169-103B7;0.638747!10153-102I9;0.0706416!13425-144D5;0.10631!13433-144E4;0.139953!13437-144E8;0.0964012!11904-125F5;0.0719267!11905-125F6;0.423981!10039-101F3;0.355411!10791-110H8;0.0881469!10017-101C8;0.135306!10045-101F9;0.765049!10509-107D5;0.709916!10839-111E2;0.587745!10692-109F8;0.117494!10079-102A7;0.0577263!10078-102A6;0.673899!10721-110A1;0.856659!10569-108B2;0.31557!10570-108B3;0.512543!10571-108B4;0.545034!10647-109A8;0.302881!10752-110D5;0.655267!10782-110G8;0.474541!10726-110A6;0.196857!10018-101C9;0.368293!10086-102B5;0.442875!10182-103D2;0.231761!10165-103B3;0.121569!10499-107C4;0.165881!10408-106B3;0.458537!10019-101D1;0.0380313!10068-101I5;0.743913!10075-102A3;0.301498!10077-102A5;0.742911!10727-110A7;0.618181!10775-110G1;0.87216!10412-106B7;0.510136!12231-129F8;0.503644!12232-129F9;0.04431!12233-129G1;0.0463838!12234-129G2;0.0609269!10414-106B9;0.034789!10170-103B8;0.159207!10183-103D3;0.0494283!10150-102I6;0.0734043!10174-103C3;0.0803253!10155-103A2;0.156868!10038-101F2;0.199714!10838-111E1;0.185415!10759-110E3;0.690313!10514-107E1;0.287339!10465-106H6;0.67815!10691-109F7;0.788113!10843-111E6;0.0536515!10844-111E7;0.159068!11747-123G1;0.349011!11748-123G2;0.05679!11749-123G3;0.0442449!11750-123G4;0.118347!11751-123G5;0.790074!11840-124H4;0.251413!11752-123G6;0.742144!11753-123G7;0.418723!11754-123G8;0.601816!11755-123G9;0.160125!11756-123H1;0.0990926!11833-124G6;0.220511!11760-123H5;0.702271!11836-124G9;0.0507987!11758-123H3;0.246318!11835-124G8;0.165085!11762-123H7;0.838767!11838-124H2;0.206054!11757-123H2;0.755873!11759-123H4;0.449961!11761-123H6;0.369486!11842-124H6;0.224779!11837-124H1;0.79033!10568-108B1;0.921968!13230-141I8;0.304904!13231-141I9;0.00845272!10696-109G3;0.012005!10493-107B7;0.0963202!10494-107B8;0.393915!10850-111F4;0.160128!10851-111F5;0.153343!10852-111F6;0.056346!10853-111F7;0.053831!10854-111F8;0.0616529!10855-111F9;0.784282!10856-111G1;0.00359941!10847-111F1;0.24334!10846-111E9;0.526076!10848-111F2;0.223499!10845-111E8;0.262468!10857-111G2;0.803707!10858-111G3;0.431185!10156-103A3;0.227731!11901-125F2;0.0760385!11902-125F3;0.225537!11903-125F4;0.322821!10689-109F5;0.433178!10648-109A9;0.294611!10784-110H1;0.390768!10744-110C6;0.0943898!10772-110F7;0.781688!10474-106I6;0.906829!10600-108E6;0.713384!10684-109E9;0.314235!12226-129F3;0.27074!12227-129F4;0.00140276!10508-107D4;0.856819!10539-107G8;0.0591616!10607-108F4;0.428058!10555-107I6;0.930098!10774-110F9;0.243145!10637-108I7;0.239881!10663-109C6;0.212539!10728-110A8;0.351251!10729-110A9;0.843928!10430-106D7;0.181805!10730-110B1;0.8317!10813-111B3;0.226989!10812-111B2;0.479682!10037-101F1;0.296592!10172-103C1;0.100486!10163-103B1;0.0595546!10076-102A4;0.0821799!10073-102A1;0.118467!10036-101E9;0.0189486!10195-103E6;0.10624!10277-104E7;0.124444!10434-106E2;0.45904!10550-107I1;0.287762!10545-107H5;0.51052!10544-107H4;0.00574311!10704-109H2;0.273497!10510-107D6;0.158432!10558-107I9;0.202259!10020-101D2;0.887914!10732-110B3;0.346479!10049-101G4;0.463945!10698-109G5;0.0853097!10437-106E5;0.313795!10417-106C3;0.32857!10035-101E8;0.404035!10171-103B9;0.108888!10157-103A4;0.060584!10034-101E7;0.0733179!10072-101I9;0.0980909!10199-103F1;0.0250515!10200-103F2;0.37498!10697-109G4;0.691884!10723-110A3;0.516722!10179-103C8;0.120538!10160-103A7;0.0910269!10180-103C9;0.121943!10162-103A9;0.212281!10021-101D3;0.118249!10840-111E3;0.277264!10706-109H4;0.390433!10033-101E6;0.742426!10032-101E5;0.160252!10490-107B4;0.100196!10439-106E7;0.348335!10022-101D4;0.458524!10176-103C5;0.677289!10469-106I1;0.0912316!10067-101I4;0.156797!10411-106B6;0.725721!10471-106I3;0.90533!10030-101E3;0.37605!10475-106I7;0.373419!10787-110H4;0.952064!10477-106I9;0.87627!10695-109G2;0.940751!11771-123I7;0.736121!11772-123I8;0.287088!11773-123I9;0.881002!10093-102C3;0.327793!10442-106F1;0.994478!10442-106F1;0.233466!10201-103F3;0.238043!10639-108I9;0.522008!11843-124H7;0.384696!11841-124H5;0.97124!10693-109F9;0.295333!10436-106E4;0.725944!10483-107A6;0.079708!10282-104F3;0.128757!10023-101D5;0.16743!10066-101I3;0.295822!10065-101I2;0.780286!10800-110I8;0.941757!10610-108F7;0.534576!10841-111E4;0.698633!10541-107H1;0.920637!10842-111E5;0.18539!10562-108A4;0.393477!10024-101D6;0.913977!10064-101I1;0.533867!10609-108F6;0.433032!10048-101G3;0.344888!10781-110G7;0.335937!10181-103D1;0.882782!10159-103A6;0.165754!10056-101H2;0.16264!10737-110B8;0.467114!10025-101D7;0.200541!10044-101F8;0.200036!10424-106D1;0.11112!10463-106H4;0.702572!10616-108G4;0.198739!10486-107A9;0.298723!10062-101H8;0.498315!10202-103F4;0.848521!10158-103A5;0.852365!10441-106E9;0.259419!10031-101E4;0.882901!10063-101H9;0.121816!10063-101H9;0.0228031!11763-123H8;0.822175!11765-123I1;0.0448914!11768-123I4;0.0634108!10807-111A6;0.00317553!10790-110H7;0.190495!10798-110I6;0.57892!10786-110H3;0.575344!10591-108D6;0.0678817!10593-108D8;0.530405!10590-108D5;0.888647!10026-101D8;0.100596!10096-102C6;0.714885!10168-103B6;0.838822!10154-103A1;0.175771!10209-103G2;0.166459!10061-101H7;0.980314!10027-101D9;0.987376!10043-101F7;0.6949!10783-110G9;0.275245!10028-101E1;0.0401647!10060-101H6;0.806384!10203-103F5;0.585129!10059-101H5;0.782963!10047-101G2;0.874023!10029-101E2;0.742006!10058-101H4;0.709705!10418-106C4;0.844283!10492-107B6;0.404877!10694-109G1;0.48503!10797-110I5;0.561613!10057-101H3;0.34394!10100-102D1;0.709854!10055-101H1;0.429878!10204-103F6;0.829932!10191-103E2;0.729903!10563-108A5;0.530288
|name=10-TGTCACTGCG,BestGuess:PB0091.1_Zbtb3_1(0.661422118679983),T:923.0(20.12%),B:6011.2(13.78%),P:1e-28
|name=10-TGTCACTGCG,BestGuess:PB0091.1_Zbtb3_1(0.661422118679983),T:923.0(20.12%),B:6011.2(13.78%),P:1e-28
|tomtom_result=Pax2#MA0067.1;0;0.00550871;2.62215;1;8;TGTCACTGCG;AGTCACGG;+!Nkx3-2#MA0122.1;-1;0.0118281;5.63019;1;9;TGTCACTGCG;TCCACTTAA;-!ABF1#MA0265.1;1;0.0152959;7.28083;1;10;TGTCACTGCG;ATATCACTTTATACGA;-!TLX1::NFIC#MA0119.1;0;0.0159458;7.59021;1;10;TGTCACTGCG;TGGCACCATGCCAA;+!achi#MA0207.1;1;0.0167911;7.99257;1;5;TGTCACTGCG;CTGTCA;-!vis#MA0252.1;1;0.0167911;7.99257;1;5;TGTCACTGCG;CTGTCA;-!hth#MA0227.1;1;0.0178075;8.47635;1;5;TGTCACTGCG;CTGTCA;-!STB3#MA0390.1;10;0.0194228;9.24523;1;10;TGTCACTGCG;GTCCAAAATTTTTCACTCTGG;+
}}
}}

Latest revision as of 12:00, 7 September 2012

Full Name: 10-TGTCACTGCG,BestGuess:PB0091.1_Zbtb3_1(0.661422118679983),T:923.0(20.12%),B:6011.2(13.78%),P:1e-28

Motif matrix
POACGT
187.68553.5340.923780.858
239.689109.837741.16932.305
30.923295.36135.681491.036
435.074606.411274.1317.384
5729.175.53882.147106.145
60.923591.643311.05119.383
710.15368.3020.923843.622
811.99939.689699.634171.678
9178.139671.02123.07550.765
10174.44763.687683.9430.923

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Pax2#MA0067.100.005508712.6221518TGTCACTGCGAGTCACGG+
Nkx3-2#MA0122.1-10.01182815.6301919TGTCACTGCGTCCACTTAA-
ABF1#MA0265.110.01529597.28083110TGTCACTGCGATATCACTTTATACGA-
TLX1::NFIC#MA0119.100.01594587.59021110TGTCACTGCGTGGCACCATGCCAA+
achi#MA0207.110.01679117.9925715TGTCACTGCGCTGTCA-
vis#MA0252.110.01679117.9925715TGTCACTGCGCTGTCA-
hth#MA0227.110.01780758.4763515TGTCACTGCGCTGTCA-
STB3#MA0390.1100.01942289.24523110TGTCACTGCGGTCCAAAATTTTTCACTCTGG+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:10-TGTCACTGCG&oldid=2133535"