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MacroAPE 1083:11-WGTGKKTTTT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;266.418;117.342;36.162;318.816!2;28.044;249.444;408.852;51.66!3;55.35;85.608;65.682;531.36!4;65.682;37.638;565.308;69.372!5;6.642;19.188;393...")
 
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10827-111C8;0.109929!10789-110H6;0.802318!10828-111C9;0.89905!10788-110H5;0.259087!10792-110H9;0.0765133!10765-110E9;0.636331!10829-111D1;0.315076!10830-111D2;0.336771!10831-111D3;0.365094!10832-111D4;0.409961!10833-111D5;0.227446!10764-110E8;0.0975551!10770-110F5;0.0788144!10399-106A3;0.5706!10400-106A4;0.0848474!10405-106A9;0.0411723!10834-111D6;0.073974!10835-111D7;0.417028!10836-111D8;0.397582!10837-111D9;0.584335!10699-109G6;0.614439!10802-111A1;0.836552!10796-110I4;0.461505!10010-101C1;0.0478063!10810-111A9;0.000724799!10421-106C7;0.0140079!10708-109H6;0.213035!12235-129G3;0.0880362!12236-129G4;0.17483!12237-129G5;0.192825!10167-103B5;0.140353!10151-102I7;0.22595!10428-106D5;0.187035!10795-110I3;0.500995!10805-111A4;0.731578!10052-101G7;0.0153935!10189-103D9;0.000392352!10589-108D4;0.000240998!10425-106D2;0.0104427!10427-106D4;0.0330783!10702-109G9;0.19676!10432-106D9;0.471311!10496-107C1;0.16585!10718-109I7;0.128318!10011-101C2;0.456123!10053-101G8;0.015492!10686-109F2;0.236722!10084-102B3;0.531279!10012-101C3;0.252866!10085-102B4;0.209772!10482-107A5;0.597641!10419-106C5;0.183021!10080-102A8;0.140085!10760-110E4;9.72939e-05!10709-109H7;0.0127732!10710-109H8;0.356103!10703-109H1;0.0965477!10719-109I8;0.0590489!10642-109A3;0.511746!10177-103C6;0.0283092!10164-103B2;0.0671168!10173-103C2;0.35344!10166-103B4;0.314183!10083-102B2;0.324096!10188-103D8;0.266621!10552-107I3;0.20286!10553-107I4;0.0696988!10013-101C4;0.141811!10536-107G5;0.0158343!10618-108G6;0.437102!10423-106C9;0.0880341!10785-110H2;0.201216!12238-129G6;0.0797781!12239-129G7;0.691173!12240-129G8;0.945058!10416-106C2;0.769887!10801-110I9;0.633575!10766-110F1;0.774419!10824-111C5;0.881862!10825-111C6;0.780849!10826-111C7;0.955243!10454-106G4;0.947353!10409-106B4;0.701829!10638-108I8;0.902602!10636-108I6;0.0742797!10513-107D9;0.233899!10420-106C6;0.0605343!10082-102B1;0.0254605!10014-101C5;0.0992405!10070-101I7;0.123587!10452-106G2;0.144915!10453-106G3;0.940135!10449-106F8;0.32422!10042-101F6;0.428551!10069-101I6;0.0584192!10193-103E4;0.270629!10631-108I1;0.291751!10438-106E6;0.0244002!10488-107B2;0.160502!10196-103E7;0.226129!10071-101I8;0.139593!10071-101I8;0.0158135!10041-101F5;0.952418!10451-106G1;0.000889298!10450-106F9;0.0202536!10604-108F1;0.0218712!10605-108F2;0.880899!10606-108F3;0.519524!10603-108E9;0.522966!10497-107C2;0.0838685!10448-106F7;0.00319642!10643-109A4;0.291875!10426-106D3;0.0085605!10431-106D8;0.186041!10197-103E8;0.0104063!10443-106F2;0.0359475!10815-111B5;0.495179!10816-111B6;0.0766483!10817-111B7;0.120848!10015-101C6;0.060573!10410-106B5;0.0363552!10054-101G9;0.42367!10758-110E2;0.244265!10711-109H9;0.37044!10040-101F4;0.0861521!10470-106I2;0.390349!10415-106C1;0.0971765!10198-103E9;0.978886!10614-108G2;0.00254218!10612-108F9;0.00315919!10549-107H9;0.308189!10615-108G3;0.000194015!10487-107B1;0.00253506!10433-106E1;0.284148!10688-109F4;0.575314!10444-106F3;0.0405227!10444-106F3;0.0109222!10485-107A8;0.0174248!10413-106B8;0.0475127!10175-103C4;0.188847!10161-103A8;0.0548123!12131-128D7;0.064726!10624-108H3;0.165417!10712-109I1;0.982158!10205-103F7;0.981127!10206-103F8;0.0215611!10207-103F9;0.200866!10050-101G5;0.00591558!10051-101G6;0.705017!10016-101C7;0.42!10046-101G1;0.198275!10778-110G4;0.295699!10633-108I3;0.737773!10818-111B8;0.463088!10819-111B9;0.00311576!10820-111C1;0.00313845!10484-107A7;0.0050414!10808-111A7;0.157207!10169-103B7;0.839804!10153-102I9;0.170646!13425-144D5;0.134196!13433-144E4;0.00654213!13437-144E8;0.0020926!11904-125F5;0.00231569!11905-125F6;0.638471!10039-101F3;0.788784!10791-110H8;0.308934!10017-101C8;0.0184226!10045-101F9;0.298907!10509-107D5;0.0193508!10839-111E2;0.419621!10692-109F8;0.00888896!10079-102A7;0.147273!10078-102A6;0.0242133!10721-110A1;0.265766!10569-108B2;0.672155!10570-108B3;0.702315!10571-108B4;0.699891!10647-109A8;0.911275!10752-110D5;0.927909!10782-110G8;0.872063!10726-110A6;0.789423!10018-101C9;0.996587!10086-102B5;0.770896!10182-103D2;0.323137!10165-103B3;0.0938949!10499-107C4;0.0874746!10408-106B3;0.138564!10019-101D1;0.959112!10068-101I5;0.000180907!10075-102A3;0.00915446!10077-102A5;0.00436058!10727-110A7;3.806e-05!10775-110G1;0.319171!10412-106B7;0.929922!12231-129F8;0.155607!12232-129F9;0.00338551!12233-129G1;0.00317449!12234-129G2;0.00364066!10414-106B9;0.0132748!10170-103B8;0.0945493!10183-103D3;0.434584!10150-102I6;0.248993!10174-103C3;0.177621!10155-103A2;0.0245615!10038-101F2;0.0364494!10838-111E1;0.0364633!10759-110E3;0.37688!10514-107E1;0.00757752!10465-106H6;0.55635!10691-109F7;0.256906!10843-111E6;0.225879!10844-111E7;0.00197059!11747-123G1;0.00593478!11748-123G2;0.724847!11749-123G3;0.775252!11750-123G4;0.805349!11751-123G5;0.702971!11840-124H4;0.676252!11752-123G6;0.712222!11753-123G7;0.570642!11754-123G8;0.449875!11755-123G9;0.915299!11756-123H1;0.446491!11833-124G6;0.921252!11760-123H5;0.201308!11836-124G9;0.846812!11758-123H3;0.703835!11835-124G8;0.961572!11762-123H7;0.891507!11838-124H2;0.765145!11757-123H2;0.488743!11759-123H4;0.510251!11761-123H6;0.437049!11842-124H6;0.892495!11837-124H1;0.15887!10568-108B1;0.993796!13230-141I8;0.0273386!13231-141I9;0.795456!10696-109G3;0.510953!10493-107B7;0.0583541!10494-107B8;0.668749!10850-111F4;0.0158358!10851-111F5;0.0308512!10852-111F6;0.0331514!10853-111F7;0.00120965!10854-111F8;0.00550773!10855-111F9;0.00519593!10856-111G1;0.0124111!10847-111F1;0.0198943!10846-111E9;0.0176402!10848-111F2;0.00247631!10845-111E8;0.00604009!10857-111G2;0.0227254!10858-111G3;0.000116152!10156-103A3;0.11407!11901-125F2;0.218145!11902-125F3;0.615319!11903-125F4;0.814446!10689-109F5;0.817318!10648-109A9;0.143617!10784-110H1;0.422292!10744-110C6;0.0926656!10772-110F7;0.999219!10474-106I6;0.417863!10600-108E6;0.624922!10684-109E9;0.97591!12226-129F3;0.0662882!12227-129F4;0.0277815!10508-107D4;0.202086!10539-107G8;0.33785!10607-108F4;0.16066!10555-107I6;0.269163!10774-110F9;0.103955!10637-108I7;0.448121!10663-109C6;0.227269!10728-110A8;0.281519!10729-110A9;0.489205!10430-106D7;0.960642!10730-110B1;0.134179!10813-111B3;0.0701439!10812-111B2;0.564027!10037-101F1;0.588289!10172-103C1;0.296728!10163-103B1;0.374723!10076-102A4;0.146658!10073-102A1;0.344921!10036-101E9;0.814731!10195-103E6;0.334504!10277-104E7;0.405991!10434-106E2;0.0079511!10550-107I1;0.647553!10545-107H5;0.272246!10544-107H4;0.185949!10704-109H2;0.0661709!10510-107D6;0.410147!10558-107I9;0.453934!10020-101D2;0.826951!10732-110B3;6.71464e-05!10049-101G4;0.765967!10698-109G5;0.176496!10437-106E5;0.242194!10417-106C3;0.00979252!10035-101E8;0.268817!10171-103B9;0.391592!10157-103A4;0.24276!10034-101E7;0.210639!10072-101I9;0.299353!10199-103F1;0.839829!10200-103F2;0.428047!10697-109G4;0.124145!10723-110A3;0.428108!10179-103C8;0.64261!10160-103A7;0.282542!10180-103C9;0.3794!10162-103A9;0.293258!10021-101D3;0.301281!10840-111E3;0.979998!10706-109H4;0.186253!10033-101E6;0.523174!10032-101E5;0.314385!10490-107B4;0.370118!10439-106E7;0.171879!10022-101D4;0.107622!10176-103C5;0.0261648!10469-106I1;0.485787!10067-101I4;0.254572!10411-106B6;0.370817!10471-106I3;0.171881!10030-101E3;0.0394243!10475-106I7;0.0103448!10787-110H4;0.458025!10477-106I9;0.0238119!10695-109G2;0.497695!11771-123I7;0.16815!11772-123I8;0.23902!11773-123I9;0.243183!10093-102C3;0.806008!10442-106F1;0.0442703!10442-106F1;0.180318!10201-103F3;0.267213!10639-108I9;0.0532581!11843-124H7;0.209088!11841-124H5;0.151408!10693-109F9;0.00476681!10436-106E4;0.000528799!10483-107A6;0.0252259!10282-104F3;0.0285035!10023-101D5;0.928127!10066-101I3;0.50424!10065-101I2;0.603797!10800-110I8;0.584677!10610-108F7;4.21192e-05!10841-111E4;0.074443!10541-107H1;0.115827!10842-111E5;0.0036674!10562-108A4;0.0319663!10024-101D6;0.0111096!10064-101I1;0.191303!10609-108F6;0.921535!10048-101G3;0.0318944!10781-110G7;0.0773608!10181-103D1;0.15864!10159-103A6;0.00731626!10056-101H2;0.0064381!10737-110B8;0.19392!10025-101D7;0.432598!10044-101F8;1.21952e-05!10424-106D1;6.86164e-06!10463-106H4;0.120507!10616-108G4;0.0127392!10486-107A9;0.0432815!10062-101H8;0.0507313!10202-103F4;0.0180246!10158-103A5;0.0214167!10441-106E9;0.00902472!10031-101E4;0.357069!10063-101H9;0.242688!10063-101H9;0.815579!11763-123H8;0.0923288!11765-123I1;0.298925!11768-123I4;0.681246!10807-111A6;0.260776!10790-110H7;0.00394458!10798-110I6;0.0021623!10786-110H3;0.0352624!10591-108D6;0.00508154!10593-108D8;0.00107236!10590-108D5;0.022497!10026-101D8;0.0113027!10096-102C6;0.0262047!10168-103B6;0.959123!10154-103A1;0.0384653!10209-103G2;0.0517668!10061-101H7;0.0636987!10027-101D9;0.136424!10043-101F7;0.461432!10783-110G9;0.000351363!10028-101E1;0.0430717!10060-101H6;0.0179828!10203-103F5;0.237457!10059-101H5;0.479299!10047-101G2;0.838371!10029-101E2;0.00235151!10058-101H4;0.00220159!10418-106C4;0.149343!10492-107B6;0.222068!10694-109G1;0.110007!10797-110I5;0.180983!10057-101H3;0.489637!10100-102D1;0.79998!10055-101H1;0.0147016!10204-103F6;0.550391!10191-103E2;0.000460343!10563-108A5;4.51962e-05
|name=11-WGTGKKTTTT,CNhs13239,BestGuess:RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq/Homer(0.737747370786036),T:738.0(24.32%),B:6663.9(15.23%),P:1e-38
|name=11-WGTGKKTTTT,CNhs13239,BestGuess:RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq/Homer(0.737747370786036),T:738.0(24.32%),B:6663.9(15.23%),P:1e-38
|tomtom_result=dl_1#MA0022.1;-1;0.00100259;0.477232;0.74374;9;TGTGGTTTTT;GGGGTTTTTCCC;+!RUNX1#MA0002.2;3;0.00156248;0.74374;0.74374;8;TGTGGTTTTT;GTCTGTGGTTT;+!NDT80#MA0343.1;0;0.00584958;2.7844;1;10;TGTGGTTTTT;TTGCGTTTTTGTGGCCGGAAA;-!CRZ1#MA0285.1;-1;0.00883921;4.20746;1;9;TGTGGTTTTT;GTGGCTTAG;-!BRCA1#MA0133.1;-1;0.0095366;4.53942;1;7;TGTGGTTTTT;GTGTTGT;-!Tal1::Gata1#MA0140.1;-1;0.0114275;5.4395;1;9;TGTGGTTTTT;CTGGTGGGGACAGATAAG;+!Pax4#MA0068.1;8;0.0118499;5.64056;1;10;TGTGGTTTTT;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!Foxd3#MA0041.1;1;0.0122887;5.84941;1;10;TGTGGTTTTT;GAATGTTTGTTT;+!En1#MA0027.1;1;0.0141452;6.73309;1;10;TGTGGTTTTT;AAGTAGTGCCC;+!HCM1#MA0317.1;-1;0.0147932;7.04158;1;8;TGTGGTTTTT;TTGTTTAT;-!ADR1#MA0268.1;-1;0.0187795;8.93906;1;7;TGTGGTTTTT;GTGGGGT;-!TBP#MA0108.2;0;0.0202509;9.63943;1;10;TGTGGTTTTT;CCCCGCCTTTTATAC;-
}}
}}

Latest revision as of 14:53, 7 September 2012

Full Name: 11-WGTGKKTTTT,CNhs13239,BestGuess:RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq/Homer(0.737747370786036),T:738.0(24.32%),B:6663.9(15.23%),P:1e-38

Motif matrix
POACGT
1266.418117.34236.162318.816
228.044249.444408.85251.66
355.3585.60865.682531.36
465.68237.638565.30869.372
56.64219.188393.354318.816
635.42476.014288.558338.742
70.73825.092230.994481.176
837.63836.9152.028511.434
96.642273.7980.738456.822
10101.84490.774209.592335.79

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

dl_1#MA0022.1-10.001002590.4772320.743749TGTGGTTTTTGGGGTTTTTCCC+
RUNX1#MA0002.230.001562480.743740.743748TGTGGTTTTTGTCTGTGGTTT+
NDT80#MA0343.100.005849582.7844110TGTGGTTTTTTTGCGTTTTTGTGGCCGGAAA-
CRZ1#MA0285.1-10.008839214.2074619TGTGGTTTTTGTGGCTTAG-
BRCA1#MA0133.1-10.00953664.5394217TGTGGTTTTTGTGTTGT-
Tal1::Gata1#MA0140.1-10.01142755.439519TGTGGTTTTTCTGGTGGGGACAGATAAG+
Pax4#MA0068.180.01184995.64056110TGTGGTTTTTGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
Foxd3#MA0041.110.01228875.84941110TGTGGTTTTTGAATGTTTGTTT+
En1#MA0027.110.01414526.73309110TGTGGTTTTTAAGTAGTGCCC+
HCM1#MA0317.1-10.01479327.0415818TGTGGTTTTTTTGTTTAT-
ADR1#MA0268.1-10.01877958.9390617TGTGGTTTTTGTGGGGT-
TBP#MA0108.200.02025099.63943110TGTGGTTTTTCCCCGCCTTTTATAC-