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MacroAPE 1083:11-GCTGTGACGA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;185.094;112.887;604.098;114.921!2;109.836;754.614;37.629;114.921!3;48.816;235.944;95.598;636.642!4;222.723;149.499;550.197;94.581!5;175.941;...")
 
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15!12176-128I7;0.829935!12177-128I8;0.821092!12182-129A4;0.793629!12183-129A5;0.343637!12184-129A6;0.479104!10809-111A8;0.971108!10597-108E3;0.613681!10717-109I6;0.478886!10455-106G5;0.210665!10534-107G3;0.355092!10429-106D6;0.688374!10464-106H5;0.838855!10827-111C8;0.722295!10789-110H6;0.0652386!10828-111C9;0.294936!10788-110H5;0.00215229!10792-110H9;0.0125178!10765-110E9;0.0120024!10829-111D1;0.0510342!10830-111D2;0.227637!10831-111D3;0.270308!10832-111D4;0.0399943!10833-111D5;0.137449!10764-110E8;0.0420808!10770-110F5;0.375928!10399-106A3;0.228306!10400-106A4;0.181864!10405-106A9;0.164229!10834-111D6;0.370585!10835-111D7;0.023387!10836-111D8;0.953431!10837-111D9;0.16087!10699-109G6;0.0851056!10802-111A1;0.077147!10796-110I4;0.0804648!10010-101C1;0.587844!10810-111A9;0.350392!10421-106C7;0.792315!10708-109H6;0.875951!12235-129G3;0.878067!12236-129G4;0.413014!12237-129G5;0.00254408!10167-103B5;0.196399!10151-102I7;0.168781!10428-106D5;0.382224!10795-110I3;0.163867!10805-111A4;0.524742!10052-101G7;0.791912!10189-103D9;0.958006!10589-108D4;0.537716!10425-106D2;0.439734!10427-106D4;0.348688!10702-109G9;0.820821!10432-106D9;0.523449!10496-107C1;0.931982!10718-109I7;0.712462!10011-101C2;0.270912!10053-101G8;0.988849!10686-109F2;0.039244!10084-102B3;0.36445!10012-101C3;0.421757!10085-102B4;0.395349!10482-107A5;0.60468!10419-106C5;0.509574!10080-102A8;0.518294!10760-110E4;0.324725!10709-109H7;0.24395!10710-109H8;0.32017!10703-109H1;0.620827!10719-109I8;0.569194!10642-109A3;0.905187!10177-103C6;0.641721!10164-103B2;0.243188!10173-103C2;0.475975!10166-103B4;0.171943!10083-102B2;0.379154!10188-103D8;0.209347!10552-107I3;0.0869184!10553-107I4;0.925407!10013-101C4;0.692675!10536-107G5;0.129615!10618-108G6;0.363683!10423-106C9;0.449238!10785-110H2;0.363545!12238-129G6;0.798687!12239-129G7;0.388977!12240-129G8;0.178502!10416-106C2;0.0783229!10801-110I9;0.683785!10766-110F1;0.0806727!10824-111C5;0.201078!10825-111C6;0.827741!10826-111C7;0.774382!10454-106G4;0.838227!10409-106B4;0.525128!10638-108I8;0.111165!10636-108I6;0.876819!10513-107D9;0.859031!10420-106C6;0.86098!10082-102B1;0.980315!10014-101C5;0.210331!10070-101I7;0.395185!10452-106G2;0.591919!10453-106G3;0.00211564!10449-106F8;0.0420924!10042-101F6;0.0801985!10069-101I6;0.234152!10193-103E4;0.687521!10631-108I1;0.354594!10438-106E6;0.755168!10488-107B2;0.118654!10196-103E7;0.121072!10071-101I8;0.660909!10071-101I8;0.698552!10041-101F5;0.889656!10451-106G1;0.401617!10450-106F9;0.0163061!10604-108F1;0.560355!10605-108F2;0.208102!10606-108F3;0.539441!10603-108E9;0.274644!10497-107C2;0.659157!10448-106F7;0.575545!10643-109A4;0.473343!10426-106D3;0.886143!10431-106D8;0.579146!10197-103E8;0.363773!10443-106F2;0.480593!10815-111B5;0.00340399!10816-111B6;0.193599!10817-111B7;0.426904!10015-101C6;0.252159!10410-106B5;0.187118!10054-101G9;0.418151!10758-110E2;0.717096!10711-109H9;0.43841!10040-101F4;0.236324!10470-106I2;0.327504!10415-106C1;0.750129!10198-103E9;0.112075!10614-108G2;0.97053!10612-108F9;0.0325099!10549-107H9;0.220462!10615-108G3;0.941564!10487-107B1;0.256286!10433-106E1;0.0773177!10688-109F4;0.633159!10444-106F3;0.685193!10444-106F3;0.116958!10485-107A8;0.104306!10413-106B8;0.64013!10175-103C4;0.982897!10161-103A8;0.0907312!12131-128D7;0.217383!10624-108H3;0.185924!10712-109I1;0.709385!10205-103F7;0.00411948!10206-103F8;0.569221!10207-103F9;0.974885!10050-101G5;0.592731!10051-101G6;0.864167!10016-101C7;0.560175!10046-101G1;0.274557!10778-110G4;0.325612!10633-108I3;0.637569!10818-111B8;0.529554!10819-111B9;0.147839!10820-111C1;0.096839!10484-107A7;0.153595!10808-111A7;0.532138!10169-103B7;0.625103!10153-102I9;0.221546!13425-144D5;0.430597!13433-144E4;0.844362!13437-144E8;0.909468!11904-125F5;0.921521!11905-125F6;1.68974e-07!10039-101F3;6.86383e-10!10791-110H8;0.31033!10017-101C8;0.431409!10045-101F9;0.393808!10509-107D5;0.792582!10839-111E2;0.293164!10692-109F8;0.80997!10079-102A7;0.912493!10078-102A6;0.530818!10721-110A1;0.673886!10569-108B2;0.610144!10570-108B3;0.384353!10571-108B4;0.0892854!10647-109A8;0.024058!10752-110D5;0.202497!10782-110G8;0.803633!10726-110A6;0.201923!10018-101C9;0.587396!10086-102B5;0.741583!10182-103D2;0.633001!10165-103B3;0.0840778!10499-107C4;0.166532!10408-106B3;0.910351!10019-101D1;0.0151373!10068-101I5;0.910061!10075-102A3;0.900709!10077-102A5;0.635897!10727-110A7;0.122169!10775-110G1;0.458469!10412-106B7;0.653106!12231-129F8;0.40999!12232-129F9;0.136673!12233-129G1;0.756411!12234-129G2;0.669759!10414-106B9;0.241803!10170-103B8;0.435687!10183-103D3;0.231262!10150-102I6;0.310063!10174-103C3;0.365922!10155-103A2;0.327858!10038-101F2;0.3816!10838-111E1;0.361795!10759-110E3;0.698957!10514-107E1;0.86276!10465-106H6;0.093377!10691-109F7;0.238235!10843-111E6;0.268469!10844-111E7;0.99798!11747-123G1;0.735801!11748-123G2;0.344648!11749-123G3;0.235408!11750-123G4;0.0574993!11751-123G5;0.913873!11840-124H4;0.183744!11752-123G6;0.554058!11753-123G7;0.310624!11754-123G8;0.10611!11755-123G9;0.469605!11756-123H1;0.665139!11833-124G6;0.174527!11760-123H5;0.300749!11836-124G9;0.742343!11758-123H3;0.0385099!11835-124G8;0.121236!11762-123H7;0.294125!11838-124H2;0.598502!11757-123H2;0.0403767!11759-123H4;0.0147639!11761-123H6;0.787421!11842-124H6;0.385337!11837-124H1;0.163757!10568-108B1;0.154066!13230-141I8;0.756897!13231-141I9;0.0421298!10696-109G3;0.129039!10493-107B7;0.922785!10494-107B8;0.532561!10850-111F4;0.670806!10851-111F5;0.997823!10852-111F6;4.79066e-05!10853-111F7;0.0208668!10854-111F8;0.0225621!10855-111F9;0.0162321!10856-111G1;0.00895546!10847-111F1;0.000182235!10846-111E9;0.00127903!10848-111F2;0.00802124!10845-111E8;0.000285369!10857-111G2;0.145326!10858-111G3;0.392039!10156-103A3;0.0397882!11901-125F2;0.39986!11902-125F3;0.485254!11903-125F4;0.237687!10689-109F5;0.287086!10648-109A9;0.952097!10784-110H1;0.715424!10744-110C6;0.607039!10772-110F7;0.108512!10474-106I6;0.039254!10600-108E6;0.0978567!10684-109E9;0.135715!12226-129F3;0.778415!12227-129F4;0.907635!10508-107D4;0.442479!10539-107G8;0.310656!10607-108F4;0.237991!10555-107I6;0.793448!10774-110F9;0.0388681!10637-108I7;0.589103!10663-109C6;0.287774!10728-110A8;0.773146!10729-110A9;0.775214!10430-106D7;0.0964598!10730-110B1;0.622335!10813-111B3;0.171119!10812-111B2;0.780705!10037-101F1;0.106563!10172-103C1;0.381981!10163-103B1;0.247557!10076-102A4;0.379334!10073-102A1;0.222468!10036-101E9;0.914479!10195-103E6;0.238385!10277-104E7;0.390878!10434-106E2;0.00338643!10550-107I1;0.263421!10545-107H5;0.831991!10544-107H4;0.158556!10704-109H2;0.849558!10510-107D6;0.185259!10558-107I9;0.395998!10020-101D2;0.982852!10732-110B3;0.926507!10049-101G4;0.0257979!10698-109G5;0.983068!10437-106E5;0.432712!10417-106C3;0.355917!10035-101E8;0.851241!10171-103B9;0.249854!10157-103A4;0.15794!10034-101E7;0.347282!10072-101I9;0.233051!10199-103F1;0.78655!10200-103F2;0.0449281!10697-109G4;0.345371!10723-110A3;0.18186!10179-103C8;0.149653!10160-103A7;0.000104788!10180-103C9;0.0329885!10162-103A9;0.0359095!10021-101D3;0.154394!10840-111E3;0.181878!10706-109H4;0.523375!10033-101E6;0.88692!10032-101E5;0.335562!10490-107B4;0.245837!10439-106E7;0.768293!10022-101D4;0.0387095!10176-103C5;0.725246!10469-106I1;0.331733!10067-101I4;0.0729801!10411-106B6;0.432209!10471-106I3;0.0495562!10030-101E3;0.467616!10475-106I7;0.602548!10787-110H4;0.713361!10477-106I9;0.880481!10695-109G2;0.822223!11771-123I7;0.984796!11772-123I8;0.437696!11773-123I9;0.60485!10093-102C3;0.707784!10442-106F1;0.210227!10442-106F1;0.685755!10201-103F3;0.540984!10639-108I9;0.622979!11843-124H7;0.777663!11841-124H5;0.93939!10693-109F9;0.66415!10436-106E4;0.0443609!10483-107A6;0.560322!10282-104F3;0.758386!10023-101D5;0.921808!10066-101I3;0.772071!10065-101I2;0.358407!10800-110I8;0.119822!10610-108F7;0.0199055!10841-111E4;0.150328!10541-107H1;0.35097!10842-111E5;0.302197!10562-108A4;0.407798!10024-101D6;0.085982!10064-101I1;0.52732!10609-108F6;0.162133!10048-101G3;0.167801!10781-110G7;0.779983!10181-103D1;0.169266!10159-103A6;0.243703!10056-101H2;0.260381!10737-110B8;0.789403!10025-101D7;0.277995!10044-101F8;0.205846!10424-106D1;0.606568!10463-106H4;0.881848!10616-108G4;0.708581!10486-107A9;0.645629!10062-101H8;0.917289!10202-103F4;0.71265!10158-103A5;0.0735742!10441-106E9;0.0626655!10031-101E4;0.601887!10063-101H9;0.25726!10063-101H9;0.892758!11763-123H8;0.383474!11765-123I1;0.00969299!11768-123I4;0.275008!10807-111A6;0.0218967!10790-110H7;0.266736!10798-110I6;0.524669!10786-110H3;0.48015!10591-108D6;0.987688!10593-108D8;0.828994!10590-108D5;0.477189!10026-101D8;0.72129!10096-102C6;0.44975!10168-103B6;0.0739289!10154-103A1;0.183425!10209-103G2;0.292595!10061-101H7;0.243829!10027-101D9;0.18114!10043-101F7;0.35138!10783-110G9;0.878589!10028-101E1;0.118929!10060-101H6;0.50204!10203-103F5;0.762699!10059-101H5;0.315784!10047-101G2;0.400189!10029-101E2;0.14185!10058-101H4;0.2231!10418-106C4;0.289266!10492-107B6;0.939119!10694-109G1;0.261734!10797-110I5;0.187794!10057-101H3;0.859555!10100-102D1;0.481859!10055-101H1;0.435443!10204-103F6;0.164065!10191-103E2;0.816621!10563-108A5;0.42566
|name=11-GCTGTGACGA,CNhs12546,BestGuess:E4F1_f1_HM09(0.73045265958925),T:1017.0(18.90%),B:4818.1(11.21%),P:1e-60
|name=11-GCTGTGACGA,CNhs12546,BestGuess:E4F1_f1_HM09(0.73045265958925),T:1017.0(18.90%),B:4818.1(11.21%),P:1e-60
|tomtom_result=MET31#MA0333.1;0;0.00185544;0.883187;1;9;GCTGTGACGA;GGTGTGGCG;+!Pax2#MA0067.1;-1;0.00279226;1.32911;1;8;GCTGTGACGA;GCGTGACT;-!ovo#MA0126.1;0;0.00803718;3.8257;1;9;GCTGTGACGA;ACTGTTACT;-!prd#MA0239.1;0;0.00803718;3.8257;1;9;GCTGTGACGA;ACTGTTACT;-!bZIP910#MA0096.1;-3;0.00981661;4.6727;1;7;GCTGTGACGA;CTGACGT;+!CREB1#MA0018.1;1;0.0124888;5.94468;1;10;GCTGTGACGA;CCTGGTGACGTC;+!TGA1A#MA0129.1;-4;0.0139719;6.65064;1;6;GCTGTGACGA;TGACGTA;-!ABF1#MA0265.1;6;0.0152577;7.26264;1;10;GCTGTGACGA;TCGTATAAAGTGATAA;+!exd#MA0222.1;-1;0.0152826;7.27451;1;8;GCTGTGACGA;TTTTGACA;+!MET32#MA0334.1;-2;0.0169443;8.06546;1;7;GCTGTGACGA;TGTGGCG;-
}}
}}

Latest revision as of 14:46, 7 September 2012

Full Name: 11-GCTGTGACGA,CNhs12546,BestGuess:E4F1_f1_HM09(0.73045265958925),T:1017.0(18.90%),B:4818.1(11.21%),P:1e-60

Motif matrix
POACGT
1185.094112.887604.098114.921
2109.836754.61437.629114.921
348.816235.94495.598636.642
4222.723149.499550.19794.581
5175.94134.5786.102800.379
6109.83682.377648.846175.941
7823.771.0171.017191.196
81.017955.981.01758.986
9137.29541.697739.35998.649
10694.61123.39197.632201.366

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
MET31#MA0333.100.001855440.88318719GCTGTGACGAGGTGTGGCG+
Pax2#MA0067.1-10.002792261.3291118GCTGTGACGAGCGTGACT-
ovo#MA0126.100.008037183.825719GCTGTGACGAACTGTTACT-
prd#MA0239.100.008037183.825719GCTGTGACGAACTGTTACT-
bZIP910#MA0096.1-30.009816614.672717GCTGTGACGACTGACGT+
CREB1#MA0018.110.01248885.94468110GCTGTGACGACCTGGTGACGTC+
TGA1A#MA0129.1-40.01397196.6506416GCTGTGACGATGACGTA-
ABF1#MA0265.160.01525777.26264110GCTGTGACGATCGTATAAAGTGATAA+
exd#MA0222.1-10.01528267.2745118GCTGTGACGATTTTGACA+
MET32#MA0334.1-20.01694438.0654617GCTGTGACGATGTGGCG-
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