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MacroAPE 1083:CTCTTCCAGTTC,motif857: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;54.586;902.34;57.928;99.146!2;60.156;25.622;10.026;1018.196!3;52.358;953.584;46.788;61.27!4;28.964;99.146;59.042;926.848!5;53.472;84.664;47....")
 
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8;0.598033!10789-110H6;0.51265!10828-111C9;0.621805!10788-110H5;0.193968!10792-110H9;0.582706!10765-110E9;0.610345!10829-111D1;0.302315!10830-111D2;0.303597!10831-111D3;0.809962!10832-111D4;0.408969!10833-111D5;0.28065!10764-110E8;0.429987!10770-110F5;0.670171!10399-106A3;0.610909!10400-106A4;0.641458!10405-106A9;0.602845!10834-111D6;0.576477!10835-111D7;0.328618!10836-111D8;0.795525!10837-111D9;0.816255!10699-109G6;0.799175!10802-111A1;0.240976!10796-110I4;0.136527!10010-101C1;0.719893!10810-111A9;0.556141!10421-106C7;0.722533!10708-109H6;0.394981!12235-129G3;0.560298!12236-129G4;0.627449!12237-129G5;0.845083!10167-103B5;0.232216!10151-102I7;0.486223!10428-106D5;0.439665!10795-110I3;0.244045!10805-111A4;0.17792!10052-101G7;0.860755!10189-103D9;0.24213!10589-108D4;0.749224!10425-106D2;0.65004!10427-106D4;0.884407!10702-109G9;0.21222!10432-106D9;0.884407!10496-107C1;0.707913!10718-109I7;0.612428!10011-101C2;0.200316!10053-101G8;0.738348!10686-109F2;0.426868!10084-102B3;0.973994!10012-101C3;0.371324!10085-102B4;0.311743!10482-107A5;0.36483!10419-106C5;0.159848!10080-102A8;0.643871!10760-110E4;0.186609!10709-109H7;0.551271!10710-109H8;0.719697!10703-109H1;0.676669!10719-109I8;0.556385!10642-109A3;0.934953!10177-103C6;0.809772!10164-103B2;0.540951!10173-103C2;0.584305!10166-103B4;0.576388!10083-102B2;0.545986!10188-103D8;0.331362!10552-107I3;0.367019!10553-107I4;0.535943!10013-101C4;0.67554!10536-107G5;0.255476!10618-108G6;0.664873!10423-106C9;0.740416!10785-110H2;0.397411!12238-129G6;0.174519!12239-129G7;0.97231!12240-129G8;0.565506!10416-106C2;0.290376!10801-110I9;0.550123!10766-110F1;0.298694!10824-111C5;0.654461!10825-111C6;0.617648!10826-111C7;0.708085!10454-106G4;0.654506!10409-106B4;0.832997!10638-108I8;0.758579!10636-108I6;0.910628!10513-107D9;0.616714!10420-106C6;0.411548!10082-102B1;0.770895!10014-101C5;0.105844!10070-101I7;0.41967!10452-106G2;0.167931!10453-106G3;0.239267!10449-106F8;0.598657!10042-101F6;0.721794!10069-101I6;0.0890723!10193-103E4;0.069467!10631-108I1;0.364121!10438-106E6;0.657557!10488-107B2;0.749017!10196-103E7;0.9148!10071-101I8;0.835366!10071-101I8;0.0811281!10041-101F5;0.57963!10451-106G1;0.362626!10450-106F9;0.86136!10604-108F1;0.681141!10605-108F2;0.946149!10606-108F3;0.844338!10603-108E9;0.643874!10497-107C2;0.99898!10448-106F7;0.66846!10643-109A4;0.48285!10426-106D3;0.576295!10431-106D8;0.523216!10197-103E8;0.757703!10443-106F2;0.284632!10815-111B5;0.320997!10816-111B6;0.926866!10817-111B7;0.93174!10015-101C6;0.881312!10410-106B5;0.531562!10054-101G9;0.771096!10758-110E2;0.0717084!10711-109H9;0.34597!10040-101F4;0.391789!10470-106I2;0.38846!10415-106C1;0.241863!10198-103E9;0.936679!10614-108G2;0.531728!10612-108F9;0.701987!10549-107H9;0.949651!10615-108G3;0.94265!10487-107B1;0.590687!10433-106E1;0.943777!10688-109F4;0.774355!10444-106F3;0.645244!10444-106F3;0.859144!10485-107A8;0.929265!10413-106B8;0.293675!10175-103C4;0.56946!10161-103A8;0.240854!12131-128D7;0.194491!10624-108H3;0.34451!10712-109I1;0.489684!10205-103F7;0.109759!10206-103F8;0.0625956!10207-103F9;0.411343!10050-101G5;0.249968!10051-101G6;0.0297339!10016-101C7;0.148036!10046-101G1;0.0453374!10778-110G4;0.0362151!10633-108I3;0.652948!10818-111B8;0.392988!10819-111B9;0.748797!10820-111C1;0.810104!10484-107A7;0.803407!10808-111A7;0.695936!10169-103B7;0.255164!10153-102I9;0.553809!13425-144D5;0.364267!13433-144E4;0.208423!13437-144E8;0.232542!11904-125F5;0.252144!11905-125F6;0.168911!10039-101F3;0.0949121!10791-110H8;0.403327!10017-101C8;0.0968451!10045-101F9;0.630326!10509-107D5;0.203752!10839-111E2;0.764088!10692-109F8;0.694302!10079-102A7;0.879358!10078-102A6;0.0521956!10721-110A1;0.0775167!10569-108B2;0.65982!10570-108B3;0.892148!10571-108B4;0.740419!10647-109A8;0.492729!10752-110D5;0.365022!10782-110G8;0.506858!10726-110A6;0.102674!10018-101C9;0.524566!10086-102B5;0.543864!10182-103D2;0.115855!10165-103B3;0.196894!10499-107C4;0.151982!10408-106B3;0.401116!10019-101D1;0.737313!10068-101I5;0.173649!10075-102A3;0.194334!10077-102A5;0.420175!10727-110A7;0.594893!10775-110G1;0.377181!10412-106B7;0.37688!12231-129F8;0.201605!12232-129F9;0.931852!12233-129G1;0.929873!12234-129G2;0.86211!10414-106B9;0.963297!10170-103B8;0.952973!10183-103D3;0.574559!10150-102I6;0.525383!10174-103C3;0.500835!10155-103A2;0.11131!10038-101F2;0.107078!10838-111E1;0.109477!10759-110E3;0.479301!10514-107E1;0.53448!10465-106H6;0.347389!10691-109F7;0.806512!10843-111E6;0.348071!10844-111E7;0.508482!11747-123G1;0.881583!11748-123G2;0.694272!11749-123G3;0.696105!11750-123G4;0.631823!11751-123G5;0.709547!11840-124H4;0.928637!11752-123G6;0.996413!11753-123G7;0.866907!11754-123G8;0.634423!11755-123G9;0.936157!11756-123H1;0.990765!11833-124G6;0.931563!11760-123H5;0.519091!11836-124G9;0.798042!11758-123H3;0.77481!11835-124G8;0.786035!11762-123H7;0.961437!11838-124H2;0.763311!11757-123H2;0.74169!11759-123H4;0.997757!11761-123H6;0.259127!11842-124H6;0.752044!11837-124H1;0.560714!10568-108B1;0.95418!13230-141I8;0.0665947!13231-141I9;0.947013!10696-109G3;0.756351!10493-107B7;0.440028!10494-107B8;0.914913!10850-111F4;0.423593!10851-111F5;0.207109!10852-111F6;0.977051!10853-111F7;0.748283!10854-111F8;0.377593!10855-111F9;0.2033!10856-111G1;0.0417491!10847-111F1;0.427862!10846-111E9;0.278518!10848-111F2;0.584304!10845-111E8;0.185021!10857-111G2;0.546062!10858-111G3;0.333722!10156-103A3;0.527989!11901-125F2;0.478867!11902-125F3;0.197282!11903-125F4;0.138842!10689-109F5;0.28526!10648-109A9;0.124221!10784-110H1;0.922064!10744-110C6;0.704407!10772-110F7;0.0485909!10474-106I6;0.82601!10600-108E6;0.248108!10684-109E9;0.455393!12226-129F3;0.422999!12227-129F4;0.645665!10508-107D4;0.54869!10539-107G8;0.830674!10607-108F4;0.450761!10555-107I6;0.692473!10774-110F9;0.866806!10637-108I7;0.412078!10663-109C6;0.826984!10728-110A8;0.639681!10729-110A9;0.636043!10430-106D7;0.640507!10730-110B1;0.525599!10813-111B3;0.644194!10812-111B2;0.88613!10037-101F1;0.400045!10172-103C1;0.468334!10163-103B1;0.56074!10076-102A4;0.413598!10073-102A1;0.425907!10036-101E9;0.539296!10195-103E6;0.323416!10277-104E7;0.478989!10434-106E2;0.0201028!10550-107I1;0.321117!10545-107H5;0.787524!10544-107H4;0.0667165!10704-109H2;0.171446!10510-107D6;0.809298!10558-107I9;0.938317!10020-101D2;0.416469!10732-110B3;0.250309!10049-101G4;0.869604!10698-109G5;0.476493!10437-106E5;0.696528!10417-106C3;0.465183!10035-101E8;0.911318!10171-103B9;0.392356!10157-103A4;0.51499!10034-101E7;0.510935!10072-101I9;0.388997!10199-103F1;0.609469!10200-103F2;0.110018!10697-109G4;0.527373!10723-110A3;0.278974!10179-103C8;0.798419!10160-103A7;0.600415!10180-103C9;0.500395!10162-103A9;0.987925!10021-101D3;0.929312!10840-111E3;0.917157!10706-109H4;0.293287!10033-101E6;0.441278!10032-101E5;0.254036!10490-107B4;0.329228!10439-106E7;0.44781!10022-101D4;0.813841!10176-103C5;0.248374!10469-106I1;0.69916!10067-101I4;0.319416!10411-106B6;0.116!10471-106I3;0.448251!10030-101E3;0.802398!10475-106I7;0.0483853!10787-110H4;0.794648!10477-106I9;0.556268!10695-109G2;0.729207!11771-123I7;0.467408!11772-123I8;0.493806!11773-123I9;0.487981!10093-102C3;0.590702!10442-106F1;0.361124!10442-106F1;0.97794!10201-103F3;0.911703!10639-108I9;0.947542!11843-124H7;0.787692!11841-124H5;0.967801!10693-109F9;0.888157!10436-106E4;0.721854!10483-107A6;0.319553!10282-104F3;0.368021!10023-101D5;0.858923!10066-101I3;0.31275!10065-101I2;0.0520365!10800-110I8;0.304495!10610-108F7;0.663673!10841-111E4;0.929804!10541-107H1;0.834563!10842-111E5;0.881041!10562-108A4;0.722829!10024-101D6;0.248358!10064-101I1;0.626668!10609-108F6;0.154401!10048-101G3;0.687515!10781-110G7;0.822037!10181-103D1;0.836252!10159-103A6;0.0812961!10056-101H2;0.0872454!10737-110B8;0.101283!10025-101D7;0.827726!10044-101F8;0.83213!10424-106D1;0.603194!10463-106H4;0.315113!10616-108G4;0.337694!10486-107A9;0.0772115!10062-101H8;0.769822!10202-103F4;0.143468!10158-103A5;0.162571!10441-106E9;0.0478176!10031-101E4;0.880706!10063-101H9;0.295974!10063-101H9;0.6301!11763-123H8;0.121927!11765-123I1;0.615954!11768-123I4;0.136442!10807-111A6;0.820693!10790-110H7;0.743774!10798-110I6;0.605122!10786-110H3;0.479523!10591-108D6;0.0506911!10593-108D8;0.216576!10590-108D5;0.328194!10026-101D8;0.243967!10096-102C6;0.110406!10168-103B6;0.44977!10154-103A1;0.31111!10209-103G2;0.276389!10061-101H7;0.197183!10027-101D9;0.0298789!10043-101F7;0.362102!10783-110G9;0.806868!10028-101E1;0.655588!10060-101H6;0.0856547!10203-103F5;0.115683!10059-101H5;0.472606!10047-101G2;0.0948446!10029-101E2;0.786029!10058-101H4;0.201227!10418-106C4;0.0434563!10492-107B6;0.451769!10694-109G1;0.793558!10797-110I5;0.0444838!10057-101H3;0.314761!10100-102D1;0.237224!10055-101H1;0.723026!10204-103F6;0.185194!10191-103E2;0.59652!10563-108A5;0.599219
|name=CTCTTCCAGTTC,motif857,CNhs13817,T:1114.0(28.64%),B:16177.9(21.15%),P:1e-27
|name=CTCTTCCAGTTC,motif857,CNhs13817,T:1114.0(28.64%),B:16177.9(21.15%),P:1e-27
|tomtom_result=GABPA#MA0062.1;0;0.000113023;0.053799;0.107598;10;CTCTTCCAGTTC;CTCTTCCGGT;-!ELK1#MA0028.1;-2;0.00145173;0.691025;0.543458;10;CTCTTCCAGTTC;CTTCCGGCTC;-!THI2#MA0407.1;1;0.00171258;0.815186;0.543458;12;CTCTTCCAGTTC;GTTCTTAGAGTTTCC;-!NFATC2#MA0152.1;-1;0.00288689;1.37416;0.68708;7;CTCTTCCAGTTC;TTTTCCA;+!Eip74EF#MA0026.1;-2;0.00565966;2.694;0.974131;7;CTCTTCCAGTTC;CTTCCGG;-!HSF1#MA0319.1;-1;0.0069773;3.3212;0.974131;8;CTCTTCCAGTTC;TGTTCCAT;-!ELK4#MA0076.1;-1;0.00716273;3.40946;0.974131;9;CTCTTCCAGTTC;ACTTCCGGT;-!GCR1#MA0304.1;0;0.011161;5.31265;1;8;CTCTTCCAGTTC;GGCTTCCA;-!GCR2#MA0305.1;-1;0.0122175;5.81552;1;7;CTCTTCCAGTTC;GCTTCCT;+!IXR1#MA0323.1;3;0.0144688;6.88715;1;12;CTCTTCCAGTTC;CCCCGCTTCCGGCTT;-!HMG-I/Y#MA0045.1;1;0.0154691;7.36331;1;12;CTCTTCCAGTTC;GTTTTTCCATTTGTTG;-!SPI1#MA0080.1;-2;0.0168346;8.01329;1;6;CTCTTCCAGTTC;CTTCCG;-!RXRA::VDR#MA0074.1;2;0.0185316;8.82104;1;12;CTCTTCCAGTTC;GGGTCAACGAGTTCA;+
}}
}}

Latest revision as of 14:24, 7 September 2012

Full Name: CTCTTCCAGTTC,motif857,CNhs13817,T:1114.0(28.64%),B:16177.9(21.15%),P:1e-27

Motif matrix
POACGT
154.586902.3457.92899.146
260.15625.62210.0261018.196
352.358953.58446.78861.27
428.96499.14659.042926.848
553.47284.66447.902927.962
686.892907.9161.2757.928
789.12914.59444.5665.726
8941.3365.72640.10466.84
977.9891.348883.40261.27
1077.98104.71673.524857.78
1125.62214.482102.488971.408
1237.876945.78663.49866.84

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
GABPA#MA0062.100.0001130230.0537990.10759810CTCTTCCAGTTCCTCTTCCGGT-
ELK1#MA0028.1-20.001451730.6910250.54345810CTCTTCCAGTTCCTTCCGGCTC-
THI2#MA0407.110.001712580.8151860.54345812CTCTTCCAGTTCGTTCTTAGAGTTTCC-
NFATC2#MA0152.1-10.002886891.374160.687087CTCTTCCAGTTCTTTTCCA+
Eip74EF#MA0026.1-20.005659662.6940.9741317CTCTTCCAGTTCCTTCCGG-
HSF1#MA0319.1-10.00697733.32120.9741318CTCTTCCAGTTCTGTTCCAT-
ELK4#MA0076.1-10.007162733.409460.9741319CTCTTCCAGTTCACTTCCGGT-
GCR1#MA0304.100.0111615.3126518CTCTTCCAGTTCGGCTTCCA-
GCR2#MA0305.1-10.01221755.8155217CTCTTCCAGTTCGCTTCCT+
IXR1#MA0323.130.01446886.88715112CTCTTCCAGTTCCCCCGCTTCCGGCTT-
HMG-I/Y#MA0045.110.01546917.36331112CTCTTCCAGTTCGTTTTTCCATTTGTTG-
SPI1#MA0080.1-20.01683468.0132916CTCTTCCAGTTCCTTCCG-
RXRA::VDR#MA0074.120.01853168.82104112CTCTTCCAGTTCGGGTCAACGAGTTCA+
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