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MacroAPE 1083:NR1I3 f2: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;9.04942965779468;0.0;13.840304182509504;5.110266159695816!2;12.77566539923954;2.1292775665399253;13.095057034220533;0.0!3;5.003802281368828;...")
 
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79!10464-106H5;0.590653!10827-111C8;0.0776256!10789-110H6;0.259581!10828-111C9;0.382316!10788-110H5;0.875742!10792-110H9;0.146942!10765-110E9;0.556313!10829-111D1;0.370369!10830-111D2;0.306092!10831-111D3;0.557645!10832-111D4;0.169879!10833-111D5;0.674623!10764-110E8;0.531603!10770-110F5;0.782552!10399-106A3;0.286075!10400-106A4;0.393428!10405-106A9;0.321223!10834-111D6;0.333879!10835-111D7;0.11688!10836-111D8;0.121318!10837-111D9;0.0753539!10699-109G6;0.062457!10802-111A1;0.865608!10796-110I4;0.525559!10010-101C1;0.372097!10810-111A9;0.0160777!10421-106C7;0.00306021!10708-109H6;0.762912!12235-129G3;0.00473852!12236-129G4;0.0781502!12237-129G5;0.00780185!10167-103B5;0.0128876!10151-102I7;0.0710424!10428-106D5;0.15823!10795-110I3;0.428855!10805-111A4;0.541891!10052-101G7;0.0660916!10189-103D9;0.0912876!10589-108D4;0.183261!10425-106D2;0.0197865!10427-106D4;0.187098!10702-109G9;0.266746!10432-106D9;0.501847!10496-107C1;0.569411!10718-109I7;0.777504!10011-101C2;0.991469!10053-101G8;0.293498!10686-109F2;0.576125!10084-102B3;0.239815!10012-101C3;0.299746!10085-102B4;0.321437!10482-107A5;0.127718!10419-106C5;0.0461652!10080-102A8;0.0566389!10760-110E4;0.0341148!10709-109H7;0.928826!10710-109H8;0.187337!10703-109H1;0.00978518!10719-109I8;0.163089!10642-109A3;0.0269856!10177-103C6;0.0431322!10164-103B2;0.206355!10173-103C2;0.080292!10166-103B4;0.0813078!10083-102B2;0.123895!10188-103D8;0.0632941!10552-107I3;0.179439!10553-107I4;0.022825!10013-101C4;0.18486!10536-107G5;0.039126!10618-108G6;0.656277!10423-106C9;0.46087!10785-110H2;0.294056!12238-129G6;0.498218!12239-129G7;0.676613!12240-129G8;0.400407!10416-106C2;0.963867!10801-110I9;0.585771!10766-110F1;0.795021!10824-111C5;0.461776!10825-111C6;0.224664!10826-111C7;0.168102!10454-106G4;0.16716!10409-106B4;0.145877!10638-108I8;0.498376!10636-108I6;0.624913!10513-107D9;0.620396!10420-106C6;0.795049!10082-102B1;0.0578602!10014-101C5;0.312789!10070-101I7;0.0402105!10452-106G2;0.166849!10453-106G3;0.37199!10449-106F8;0.0887647!10042-101F6;0.0977036!10069-101I6;0.669144!10193-103E4;0.121952!10631-108I1;0.267815!10438-106E6;0.164345!10488-107B2;0.156936!10196-103E7;0.12217!10071-101I8;0.639441!10071-101I8;0.146909!10041-101F5;0.122901!10451-106G1;0.492619!10450-106F9;0.229667!10604-108F1;0.0146975!10605-108F2;0.203932!10606-108F3;0.0286655!10603-108E9;0.0756675!10497-107C2;0.721714!10448-106F7;0.866031!10643-109A4;0.501178!10426-106D3;0.425969!10431-106D8;0.58802!10197-103E8;0.469563!10443-106F2;0.0658658!10815-111B5;0.00123749!10816-111B6;0.0409545!10817-111B7;0.0696259!10015-101C6;0.0572551!10410-106B5;0.143392!10054-101G9;0.0749113!10758-110E2;0.582706!10711-109H9;0.00217183!10040-101F4;0.0388337!10470-106I2;0.155369!10415-106C1;0.218993!10198-103E9;0.809519!10614-108G2;0.00389936!10612-108F9;0.722579!10549-107H9;0.105184!10615-108G3;0.0176873!10487-107B1;0.145221!10433-106E1;0.118513!10688-109F4;0.397207!10444-106F3;0.0467535!10444-106F3;0.00240714!10485-107A8;0.00119102!10413-106B8;0.00243406!10175-103C4;0.0417039!10161-103A8;0.471533!12131-128D7;0.600281!10624-108H3;0.367472!10712-109I1;0.663514!10205-103F7;0.165208!10206-103F8;0.0235586!10207-103F9;0.0576037!10050-101G5;0.496052!10051-101G6;0.63718!10016-101C7;0.1804!10046-101G1;0.30893!10778-110G4;0.301769!10633-108I3;0.585968!10818-111B8;0.98162!10819-111B9;0.704813!10820-111C1;0.621427!10484-107A7;0.470039!10808-111A7;0.690136!10169-103B7;0.0681754!10153-102I9;0.191693!13425-144D5;0.276022!13433-144E4;0.711003!13437-144E8;0.962052!11904-125F5;0.663104!11905-125F6;0.746775!10039-101F3;0.92826!10791-110H8;0.153816!10017-101C8;0.970344!10045-101F9;0.00127204!10509-107D5;0.103936!10839-111E2;0.0511958!10692-109F8;0.00795739!10079-102A7;0.12706!10078-102A6;0.183069!10721-110A1;0.405508!10569-108B2;0.576387!10570-108B3;0.438187!10571-108B4;0.49283!10647-109A8;0.1792!10752-110D5;0.804748!10782-110G8;0.161863!10726-110A6;0.338391!10018-101C9;0.00752897!10086-102B5;0.0538245!10182-103D2;0.25678!10165-103B3;0.787626!10499-107C4;0.535575!10408-106B3;0.0725323!10019-101D1;0.389766!10068-101I5;0.0458532!10075-102A3;0.374252!10077-102A5;0.0187622!10727-110A7;0.0572463!10775-110G1;0.25946!10412-106B7;0.125143!12231-129F8;0.310308!12232-129F9;0.000168937!12233-129G1;0.000438001!12234-129G2;0.00572552!10414-106B9;0.000742606!10170-103B8;0.0176793!10183-103D3;0.167416!10150-102I6;0.160799!10174-103C3;0.280543!10155-103A2;0.728827!10038-101F2;0.664939!10838-111E1;0.78261!10759-110E3;0.0233319!10514-107E1;0.212037!10465-106H6;0.00295933!10691-109F7;0.0958364!10843-111E6;0.0279476!10844-111E7;0.0132069!11747-123G1;0.031853!11748-123G2;0.15733!11749-123G3;0.0822558!11750-123G4;0.0176451!11751-123G5;0.557692!11840-124H4;0.340702!11752-123G6;0.00482355!11753-123G7;0.191243!11754-123G8;0.0639821!11755-123G9;0.0791922!11756-123H1;0.430963!11833-124G6;0.951427!11760-123H5;0.234653!11836-124G9;0.72726!11758-123H3;0.317351!11835-124G8;0.481694!11762-123H7;0.125025!11838-124H2;0.881573!11757-123H2;0.840704!11759-123H4;0.919086!11761-123H6;0.982592!11842-124H6;0.964046!11837-124H1;0.573005!10568-108B1;0.45116!13230-141I8;0.444515!13231-141I9;0.0486784!10696-109G3;0.0764806!10493-107B7;0.0646326!10494-107B8;0.000433382!10850-111F4;0.404912!10851-111F5;0.214724!10852-111F6;0.7555!10853-111F7;0.00744111!10854-111F8;0.00419887!10855-111F9;0.00605366!10856-111G1;0.559364!10847-111F1;0.716706!10846-111E9;0.0304495!10848-111F2;0.0823401!10845-111E8;0.00414049!10857-111G2;0.572727!10858-111G3;0.179164!10156-103A3;0.214914!11901-125F2;0.24849!11902-125F3;0.137377!11903-125F4;0.135525!10689-109F5;0.265492!10648-109A9;0.956789!10784-110H1;0.830534!10744-110C6;0.739681!10772-110F7;0.996151!10474-106I6;0.0733329!10600-108E6;0.861523!10684-109E9;0.224172!12226-129F3;0.0339292!12227-129F4;0.999435!10508-107D4;0.505425!10539-107G8;0.00455745!10607-108F4;0.0360163!10555-107I6;0.0130638!10774-110F9;0.000299991!10637-108I7;0.0242831!10663-109C6;0.00627601!10728-110A8;0.00419354!10729-110A9;0.0272182!10430-106D7;0.372531!10730-110B1;0.0311666!10813-111B3;0.331973!10812-111B2;0.175073!10037-101F1;0.0568912!10172-103C1;0.163039!10163-103B1;0.0932351!10076-102A4;0.290648!10073-102A1;0.150927!10036-101E9;0.10171!10195-103E6;0.264423!10277-104E7;0.167025!10434-106E2;0.736837!10550-107I1;0.559463!10545-107H5;0.120373!10544-107H4;0.924919!10704-109H2;0.158773!10510-107D6;0.790146!10558-107I9;0.0631991!10020-101D2;0.21073!10732-110B3;0.168883!10049-101G4;0.375582!10698-109G5;0.736663!10437-106E5;0.440045!10417-106C3;0.00757827!10035-101E8;0.548987!10171-103B9;0.194217!10157-103A4;0.263484!10034-101E7;0.223627!10072-101I9;0.226938!10199-103F1;0.0310864!10200-103F2;0.45885!10697-109G4;0.0366576!10723-110A3;0.0444241!10179-103C8;0.320935!10160-103A7;0.309366!10180-103C9;0.09132!10162-103A9;0.0626426!10021-101D3;0.131206!10840-111E3;0.757585!10706-109H4;0.275785!10033-101E6;0.494544!10032-101E5;0.264634!10490-107B4;0.222497!10439-106E7;0.108028!10022-101D4;0.765333!10176-103C5;0.356255!10469-106I1;0.0876151!10067-101I4;0.0536294!10411-106B6;0.284472!10471-106I3;0.556206!10030-101E3;0.695106!10475-106I7;0.911723!10787-110H4;0.00734482!10477-106I9;0.0368483!10695-109G2;0.126998!11771-123I7;0.0143624!11772-123I8;0.141839!11773-123I9;0.991822!10093-102C3;0.502805!10442-106F1;0.919829!10442-106F1;0.0991877!10201-103F3;0.116962!10639-108I9;0.418798!11843-124H7;0.890969!11841-124H5;0.393302!10693-109F9;0.485856!10436-106E4;0.672957!10483-107A6;0.403327!10282-104F3;0.613785!10023-101D5;0.281846!10066-101I3;0.16434!10065-101I2;0.294586!10800-110I8;0.0367637!10610-108F7;0.245537!10841-111E4;0.00045813!10541-107H1;8.13619e-06!10842-111E5;0.0450522!10562-108A4;0.00520096!10024-101D6;0.630922!10064-101I1;0.000642335!10609-108F6;0.0435375!10048-101G3;0.260023!10781-110G7;0.431697!10181-103D1;0.346385!10159-103A6;0.991642!10056-101H2;0.790977!10737-110B8;0.881495!10025-101D7;0.571446!10044-101F8;0.137398!10424-106D1;0.304263!10463-106H4;0.134873!10616-108G4;0.814708!10486-107A9;0.63369!10062-101H8;0.128347!10202-103F4;0.103954!10158-103A5;0.955824!10441-106E9;0.97292!10031-101E4;0.00559613!10063-101H9;0.224789!10063-101H9;0.0592172!11763-123H8;0.012296!11765-123I1;0.024429!11768-123I4;0.0245277!10807-111A6;0.0271958!10790-110H7;0.292841!10798-110I6;0.145008!10786-110H3;0.478432!10591-108D6;0.818035!10593-108D8;0.537376!10590-108D5;0.916133!10026-101D8;0.289289!10096-102C6;0.00101273!10168-103B6;0.965626!10154-103A1;0.523295!10209-103G2;0.458974!10061-101H7;0.0992764!10027-101D9;0.418176!10043-101F7;0.435552!10783-110G9;0.75299!10028-101E1;0.441378!10060-101H6;0.3131!10203-103F5;0.303399!10059-101H5;0.0874709!10047-101G2;0.240335!10029-101E2;0.369631!10058-101H4;0.208265!10418-106C4;0.304785!10492-107B6;0.615353!10694-109G1;0.000500048!10797-110I5;0.193566!10057-101H3;0.048544!10100-102D1;0.271848!10055-101H1;0.230082!10204-103F6;0.711178!10191-103E2;0.0372043!10563-108A5;0.0257898
|name=NR1I3_f2
|name=NR1I3_f2
|tomtom_result=NR4A2#MA0160.1;0;0.00222448;1.05885;1;8;GGGGTCAGGAAAGTTCAG;AAGGTCAC;+!usp#MA0016.1;0;0.00242833;1.15589;1;10;GGGGTCAGGAAAGTTCAG;GGGGTCACGG;+!RXR::RAR_DR5#MA0159.1;0;0.0034738;1.65353;1;17;GGGGTCAGGAAAGTTCAG;AGGTCATGGAGAGGTCA;+!RXRA::VDR#MA0074.1;-2;0.00428899;2.04156;1;15;GGGGTCAGGAAAGTTCAG;GGGTCAACGAGTTCA;+!Pax4#MA0068.1;2;0.00935643;4.45366;1;18;GGGGTCAGGAAAGTTCAG;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!RORA_1#MA0071.1;3;0.00959283;4.56619;1;7;GGGGTCAGGAAAGTTCAG;ATCAAGGTCA;+!Tal1::Gata1#MA0140.1;0;0.00984433;4.6859;1;18;GGGGTCAGGAAAGTTCAG;CTGGTGGGGACAGATAAG;+!Pax5#MA0014.1;-1;0.0110946;5.28105;1;17;GGGGTCAGGAAAGTTCAG;GGAGCACTGAAGCGTAACCG;+!Esrrb#MA0141.1;-5;0.0131534;6.26103;1;12;GGGGTCAGGAAAGTTCAG;AGCTCAAGGTCA;+!ct#MA0218.1;-12;0.0151412;7.20723;1;6;GGGGTCAGGAAAGTTCAG;GTTCAA;-!Ar#MA0007.1;2;0.0166774;7.93845;1;18;GGGGTCAGGAAAGTTCAG;GGCGGGTACACGATGTTCTTAT;-!PPARG::RXRA#MA0065.2;-2;0.018877;8.98543;1;15;GGGGTCAGGAAAGTTCAG;GTAGGGCAAAGGTCA;+!YAP1#MA0415.1;2;0.0202454;9.63681;1;18;GGGGTCAGGAAAGTTCAG;ACGAGCTTACGTAAGCAAAT;-
}}
}}

Latest revision as of 13:40, 7 September 2012

Full Name: NR1I3_f2

Motif matrix
POACGT
19.049429657794680.013.8403041825095045.110266159695816
212.775665399239542.129277566539925313.0950570342205330.0
35.0038022813688280.020.973384030418262.0228136882129286
40.03.93916349809886420.3346007604562763.72623574144486
50.00.00.958174904942964927.04182509505702
60.022.9961977186311731.91634980988593243.087452471482876
725.977186311787062.02281368821292860.00.0
88.9429657794676634.57794676806084810.0076045627376564.4714828897338315
97.1330798479087575.429657794676808510.8593155893536174.577946768060848
1011.1787072243346075.5361216730037967.452471482889723.8326996197718755
1116.2889733840304242.02281368821292868.7300380228136870.9581749049429649
1225.3384030418251030.02.6615969581749040.0
131.0646387832699610.026.9353612167300370.0
140.01.80988593155893625.96197718631177620.228136882129288
154.8973384030418392.9809885931558880.020.12167300380227
160.019.8022813688213052.02281368821292866.17490494296578
1719.9087452471482962.02281368821292863.9391634980988642.1292775665399253
185.1368821292775563.96577946768060410.0342205323193958.863117870722444

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
NR4A2#MA0160.100.002224481.0588518GGGGTCAGGAAAGTTCAGAAGGTCAC+
usp#MA0016.100.002428331.15589110GGGGTCAGGAAAGTTCAGGGGGTCACGG+
RXR::RAR_DR5#MA0159.100.00347381.65353117GGGGTCAGGAAAGTTCAGAGGTCATGGAGAGGTCA+
RXRA::VDR#MA0074.1-20.004288992.04156115GGGGTCAGGAAAGTTCAGGGGTCAACGAGTTCA+
Pax4#MA0068.120.009356434.45366118GGGGTCAGGAAAGTTCAGGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
RORA_1#MA0071.130.009592834.5661917GGGGTCAGGAAAGTTCAGATCAAGGTCA+
Tal1::Gata1#MA0140.100.009844334.6859118GGGGTCAGGAAAGTTCAGCTGGTGGGGACAGATAAG+
Pax5#MA0014.1-10.01109465.28105117GGGGTCAGGAAAGTTCAGGGAGCACTGAAGCGTAACCG+
Esrrb#MA0141.1-50.01315346.26103112GGGGTCAGGAAAGTTCAGAGCTCAAGGTCA+
ct#MA0218.1-120.01514127.2072316GGGGTCAGGAAAGTTCAGGTTCAA-
Ar#MA0007.120.01667747.93845118GGGGTCAGGAAAGTTCAGGGCGGGTACACGATGTTCTTAT-
PPARG::RXRA#MA0065.2-20.0188778.98543115GGGGTCAGGAAAGTTCAGGTAGGGCAAAGGTCA+
YAP1#MA0415.120.02024549.63681118GGGGTCAGGAAAGTTCAGACGAGCTTACGTAAGCAAAT-
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