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MacroAPE 1083:9-CTGTTGCGT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;0.452;450.644;0.452;0.452!2;4.972;2.712;111.192;333.124!3;0.452;75.484;362.956;13.108!4;0.452;129.724;0.452;321.372!5;20.792;0.452;28.928;40...")
 
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8;0.021215!12182-129A4;0.0627417!12183-129A5;0.0386923!12184-129A6;0.0498166!10809-111A8;0.00924637!10597-108E3;0.315362!10717-109I6;0.601801!10455-106G5;0.0356057!10534-107G3;0.484757!10429-106D6;0.894572!10464-106H5;0.407693!10827-111C8;0.784862!10789-110H6;0.678964!10828-111C9;0.138809!10788-110H5;0.416816!10792-110H9;0.0594962!10765-110E9;0.30615!10829-111D1;0.181245!10830-111D2;0.560318!10831-111D3;0.700661!10832-111D4;0.12311!10833-111D5;0.417009!10764-110E8;0.329136!10770-110F5;0.265961!10399-106A3;0.635856!10400-106A4;0.238328!10405-106A9;0.212177!10834-111D6;0.324746!10835-111D7;0.277226!10836-111D8;0.632512!10837-111D9;0.565353!10699-109G6;0.17768!10802-111A1;0.92925!10796-110I4;0.49655!10010-101C1;0.663504!10810-111A9;0.92601!10421-106C7;0.629943!10708-109H6;0.961804!12235-129G3;0.701139!12236-129G4;0.860018!12237-129G5;0.404466!10167-103B5;0.356709!10151-102I7;0.0296336!10428-106D5;0.0192168!10795-110I3;0.624399!10805-111A4;0.451473!10052-101G7;0.815513!10189-103D9;0.696639!10589-108D4;0.345137!10425-106D2;0.866865!10427-106D4;0.843836!10702-109G9;0.63423!10432-106D9;0.437141!10496-107C1;0.285582!10718-109I7;0.635569!10011-101C2;0.265639!10053-101G8;0.377901!10686-109F2;0.0489347!10084-102B3;0.606044!10012-101C3;0.102123!10085-102B4;0.058391!10482-107A5;0.0801385!10419-106C5;0.187386!10080-102A8;0.563616!10760-110E4;0.643219!10709-109H7;0.0179627!10710-109H8;0.348864!10703-109H1;0.319958!10719-109I8;0.784575!10642-109A3;0.88587!10177-103C6;0.726913!10164-103B2;0.100195!10173-103C2;0.0182045!10166-103B4;0.0559198!10083-102B2;0.0109625!10188-103D8;0.0535071!10552-107I3;0.0425169!10553-107I4;0.906673!10013-101C4;0.924247!10536-107G5;0.511331!10618-108G6;0.479195!10423-106C9;0.821148!10785-110H2;0.763472!12238-129G6;0.656021!12239-129G7;0.68965!12240-129G8;0.309305!10416-106C2;0.658545!10801-110I9;0.952473!10766-110F1;0.127846!10824-111C5;0.124458!10825-111C6;0.177621!10826-111C7;0.18138!10454-106G4;0.211681!10409-106B4;0.335153!10638-108I8;0.422169!10636-108I6;0.0974765!10513-107D9;0.214416!10420-106C6;0.649099!10082-102B1;0.557694!10014-101C5;0.687959!10070-101I7;0.596049!10452-106G2;0.778209!10453-106G3;0.864621!10449-106F8;0.586338!10042-101F6;0.449562!10069-101I6;0.0525864!10193-103E4;0.711834!10631-108I1;0.0447242!10438-106E6;0.804609!10488-107B2;0.864203!10196-103E7;0.336338!10071-101I8;0.259114!10071-101I8;0.731521!10041-101F5;0.0538444!10451-106G1;0.489619!10450-106F9;0.851983!10604-108F1;0.616919!10605-108F2;0.938678!10606-108F3;0.484099!10603-108E9;0.987243!10497-107C2;0.536308!10448-106F7;0.114863!10643-109A4;0.997504!10426-106D3;0.146637!10431-106D8;0.180719!10197-103E8;0.175541!10443-106F2;0.538151!10815-111B5;0.00771299!10816-111B6;0.867663!10817-111B7;0.683572!10015-101C6;0.856523!10410-106B5;0.927752!10054-101G9;0.295692!10758-110E2;0.647398!10711-109H9;0.326596!10040-101F4;0.401123!10470-106I2;0.0308363!10415-106C1;0.168744!10198-103E9;0.0211336!10614-108G2;0.386244!10612-108F9;0.00099765!10549-107H9;0.139832!10615-108G3;0.996185!10487-107B1;0.14386!10433-106E1;0.485896!10688-109F4;0.385393!10444-106F3;0.525064!10444-106F3;0.737172!10485-107A8;0.686127!10413-106B8;0.401521!10175-103C4;0.815845!10161-103A8;0.106613!12131-128D7;0.0354835!10624-108H3;0.0732423!10712-109I1;0.592197!10205-103F7;0.377315!10206-103F8;0.269525!10207-103F9;0.344848!10050-101G5;0.210325!10051-101G6;0.995782!10016-101C7;0.425628!10046-101G1;0.315808!10778-110G4;0.261191!10633-108I3;0.980599!10818-111B8;0.421202!10819-111B9;0.750778!10820-111C1;0.715817!10484-107A7;0.74145!10808-111A7;0.933764!10169-103B7;0.907694!10153-102I9;0.049794!13425-144D5;0.0261243!13433-144E4;0.519803!13437-144E8;0.629489!11904-125F5;0.503533!11905-125F6;0.415782!10039-101F3;0.620615!10791-110H8;0.0235265!10017-101C8;0.518254!10045-101F9;0.792815!10509-107D5;0.78718!10839-111E2;0.662329!10692-109F8;0.698644!10079-102A7;0.39811!10078-102A6;0.781854!10721-110A1;0.849636!10569-108B2;0.866161!10570-108B3;0.67161!10571-108B4;0.551803!10647-109A8;0.658904!10752-110D5;0.904266!10782-110G8;0.652636!10726-110A6;0.784261!10018-101C9;0.18979!10086-102B5;0.681403!10182-103D2;0.918665!10165-103B3;0.0462241!10499-107C4;0.0321791!10408-106B3;0.837138!10019-101D1;0.369999!10068-101I5;0.410059!10075-102A3;0.097539!10077-102A5;0.561004!10727-110A7;0.647274!10775-110G1;0.692895!10412-106B7;0.842607!12231-129F8;0.781659!12232-129F9;0.0631281!12233-129G1;0.172389!12234-129G2;0.0723666!10414-106B9;0.0275178!10170-103B8;0.358655!10183-103D3;0.0838879!10150-102I6;0.0451303!10174-103C3;0.0300421!10155-103A2;0.157524!10038-101F2;0.0538258!10838-111E1;0.0924181!10759-110E3;0.625723!10514-107E1;0.340385!10465-106H6;0.593549!10691-109F7;0.589796!10843-111E6;0.0590188!10844-111E7;0.80851!11747-123G1;0.822482!11748-123G2;0.09212!11749-123G3;0.203736!11750-123G4;0.317518!11751-123G5;0.292668!11840-124H4;0.295735!11752-123G6;0.585769!11753-123G7;0.527738!11754-123G8;0.503494!11755-123G9;0.0749937!11756-123H1;0.0673745!11833-124G6;0.0708216!11760-123H5;0.843288!11836-124G9;0.0944518!11758-123H3;0.566589!11835-124G8;0.127739!11762-123H7;0.952223!11838-124H2;0.0776111!11757-123H2;0.425225!11759-123H4;0.0238333!11761-123H6;0.386221!11842-124H6;0.124325!11837-124H1;0.96619!10568-108B1;0.533482!13230-141I8;0.132322!13231-141I9;0.219631!10696-109G3;0.298237!10493-107B7;0.799188!10494-107B8;0.100468!10850-111F4;0.194025!10851-111F5;0.170381!10852-111F6;0.370155!10853-111F7;0.0181637!10854-111F8;0.0441!10855-111F9;0.218306!10856-111G1;0.00237787!10847-111F1;0.250231!10846-111E9;0.034355!10848-111F2;0.192654!10845-111E8;0.0636195!10857-111G2;0.337672!10858-111G3;0.132128!10156-103A3;0.283946!11901-125F2;0.0342788!11902-125F3;0.395297!11903-125F4;0.964115!10689-109F5;0.377344!10648-109A9;0.0489893!10784-110H1;0.235099!10744-110C6;0.359965!10772-110F7;0.831479!10474-106I6;0.163034!10600-108E6;0.491342!10684-109E9;0.470174!12226-129F3;0.155005!12227-129F4;0.138576!10508-107D4;0.0643407!10539-107G8;0.287427!10607-108F4;0.863043!10555-107I6;0.93665!10774-110F9;0.502664!10637-108I7;0.313353!10663-109C6;0.189537!10728-110A8;0.203231!10729-110A9;0.446101!10430-106D7;0.811433!10730-110B1;0.51792!10813-111B3;0.567245!10812-111B2;0.771691!10037-101F1;0.79771!10172-103C1;0.0256159!10163-103B1;0.0616829!10076-102A4;0.0331761!10073-102A1;0.0398265!10036-101E9;0.0828653!10195-103E6;0.0316477!10277-104E7;0.0207391!10434-106E2;0.0225795!10550-107I1;0.598442!10545-107H5;0.205308!10544-107H4;0.416564!10704-109H2;0.238547!10510-107D6;0.889915!10558-107I9;0.880224!10020-101D2;0.713589!10732-110B3;0.207048!10049-101G4;0.0357042!10698-109G5;0.11547!10437-106E5;0.701725!10417-106C3;0.76837!10035-101E8;0.0875194!10171-103B9;0.0273225!10157-103A4;0.0605654!10034-101E7;0.0294265!10072-101I9;0.0323078!10199-103F1;0.0592662!10200-103F2;0.380369!10697-109G4;0.735909!10723-110A3;0.791361!10179-103C8;0.120529!10160-103A7;0.00388432!10180-103C9;0.00638892!10162-103A9;0.00114643!10021-101D3;0.00203778!10840-111E3;0.994697!10706-109H4;0.959442!10033-101E6;0.936434!10032-101E5;0.0288375!10490-107B4;0.0381094!10439-106E7;0.0994817!10022-101D4;0.0680898!10176-103C5;0.543858!10469-106I1;0.0166187!10067-101I4;0.912406!10411-106B6;0.723369!10471-106I3;0.0185144!10030-101E3;0.0327811!10475-106I7;0.227195!10787-110H4;0.958209!10477-106I9;0.778983!10695-109G2;0.562163!11771-123I7;0.155253!11772-123I8;0.205292!11773-123I9;0.754755!10093-102C3;0.110482!10442-106F1;0.302287!10442-106F1;0.10233!10201-103F3;0.194182!10639-108I9;0.260517!11843-124H7;0.791098!11841-124H5;0.240059!10693-109F9;0.082964!10436-106E4;0.947376!10483-107A6;0.331248!10282-104F3;0.168226!10023-101D5;0.587701!10066-101I3;0.449261!10065-101I2;0.857008!10800-110I8;0.844082!10610-108F7;0.833051!10841-111E4;0.345938!10541-107H1;0.670763!10842-111E5;0.519609!10562-108A4;0.439388!10024-101D6;0.267711!10064-101I1;0.5151!10609-108F6;0.996595!10048-101G3;0.440934!10781-110G7;0.0983945!10181-103D1;0.202992!10159-103A6;0.112482!10056-101H2;0.0940895!10737-110B8;0.501194!10025-101D7;0.939604!10044-101F8;0.765429!10424-106D1;0.611799!10463-106H4;0.80341!10616-108G4;0.238227!10486-107A9;0.280886!10062-101H8;0.727029!10202-103F4;0.410634!10158-103A5;0.644265!10441-106E9;0.0467409!10031-101E4;0.979547!10063-101H9;0.0331517!10063-101H9;0.0523074!11763-123H8;0.294342!11765-123I1;0.673905!11768-123I4;0.338542!10807-111A6;0.467715!10790-110H7;0.545223!10798-110I6;0.865006!10786-110H3;0.397956!10591-108D6;0.500743!10593-108D8;0.42548!10590-108D5;0.776462!10026-101D8;0.615814!10096-102C6;0.448355!10168-103B6;0.0370162!10154-103A1;0.0460415!10209-103G2;0.0290683!10061-101H7;0.974407!10027-101D9;0.77144!10043-101F7;0.0850108!10783-110G9;0.0559385!10028-101E1;0.106905!10060-101H6;0.595741!10203-103F5;0.103435!10059-101H5;0.994336!10047-101G2;0.705714!10029-101E2;0.940409!10058-101H4;0.94186!10418-106C4;0.906076!10492-107B6;0.0520296!10694-109G1;0.55355!10797-110I5;0.525506!10057-101H3;0.41763!10100-102D1;0.817569!10055-101H1;0.256508!10204-103F6;0.832015!10191-103E2;0.205827!10563-108A5;0.649149
|name=9-CTGTTGCGT,CNhs13539,BestGuess:MYB.p2.SwissRegulon.nucfreq(0.68195734924287),T:452.0(17.24%),B:4321.7(9.78%),P:1e-31
|name=9-CTGTTGCGT,CNhs13539,BestGuess:MYB.p2.SwissRegulon.nucfreq(0.68195734924287),T:452.0(17.24%),B:4321.7(9.78%),P:1e-31
|tomtom_result=BRCA1#MA0133.1;0;0.000804339;0.382865;0.511565;7;CTGTTGCGT;GTGTTGT;-!Myf#MA0055.1;3;0.00155919;0.742177;0.511565;9;CTGTTGCGT;CAGCAGCTGCTG;-!mab-3#MA0262.1;1;0.00223507;1.06389;0.511565;9;CTGTTGCGT;AATGTTGCGAATT;+!Pax5#MA0014.1;6;0.00411571;1.95908;0.511565;9;CTGTTGCGT;GGAGCACTGAAGCGTAACCG;+!NHLH1#MA0048.1;3;0.00456083;2.17095;0.511565;9;CTGTTGCGT;GCGCAGCTGCGT;+!MET31#MA0333.1;1;0.00487766;2.32177;0.511565;8;CTGTTGCGT;GGTGTGGCG;+!MET32#MA0334.1;-1;0.0051704;2.46111;0.511565;7;CTGTTGCGT;TGTGGCG;-!ovo#MA0126.1;1;0.00536714;2.55476;0.511565;8;CTGTTGCGT;ACTGTTACT;-!prd#MA0239.1;1;0.00536714;2.55476;0.511565;8;CTGTTGCGT;ACTGTTACT;-!Gamyb#MA0034.1;2;0.0053935;2.56731;0.511565;8;CTGTTGCGT;GGCGGTTGTC;-!MET28#MA0332.1;0;0.00946681;4.5062;0.685031;6;CTGTTGCGT;CTGTGG;+!FHL1#MA0295.1;-2;0.00975661;4.64414;0.685031;7;CTGTTGCGT;TTTGCGTC;-!Cebpa#MA0102.1;1;0.0101113;4.81299;0.685031;9;CTGTTGCGT;GAGATTGCGAAA;-!Pax6#MA0069.1;2;0.0156068;7.42881;0.986851;9;CTGTTGCGT;AACTCATGCGTGAA;-!RUNX1#MA0002.2;2;0.0177186;8.43405;0.996308;9;CTGTTGCGT;GTCTGTGGTTT;+
}}
}}

Latest revision as of 13:38, 7 September 2012

Full Name: 9-CTGTTGCGT,CNhs13539,BestGuess:MYB.p2.SwissRegulon.nucfreq(0.68195734924287),T:452.0(17.24%),B:4321.7(9.78%),P:1e-31

Motif matrix
POACGT
10.452450.6440.4520.452
24.9722.712111.192333.124
30.45275.484362.95613.108
40.452129.7240.452321.372
520.7920.45228.928401.828
639.3240.452408.1564.068
70.452320.46833.997.18
810.39624.86324.53692.208
983.620.45288.592279.336

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
BRCA1#MA0133.100.0008043390.3828650.5115657CTGTTGCGTGTGTTGT-
Myf#MA0055.130.001559190.7421770.5115659CTGTTGCGTCAGCAGCTGCTG-
mab-3#MA0262.110.002235071.063890.5115659CTGTTGCGTAATGTTGCGAATT+
Pax5#MA0014.160.004115711.959080.5115659CTGTTGCGTGGAGCACTGAAGCGTAACCG+
NHLH1#MA0048.130.004560832.170950.5115659CTGTTGCGTGCGCAGCTGCGT+
MET31#MA0333.110.004877662.321770.5115658CTGTTGCGTGGTGTGGCG+
MET32#MA0334.1-10.00517042.461110.5115657CTGTTGCGTTGTGGCG-
ovo#MA0126.110.005367142.554760.5115658CTGTTGCGTACTGTTACT-
prd#MA0239.110.005367142.554760.5115658CTGTTGCGTACTGTTACT-
Gamyb#MA0034.120.00539352.567310.5115658CTGTTGCGTGGCGGTTGTC-
MET28#MA0332.100.009466814.50620.6850316CTGTTGCGTCTGTGG+
FHL1#MA0295.1-20.009756614.644140.6850317CTGTTGCGTTTTGCGTC-
Cebpa#MA0102.110.01011134.812990.6850319CTGTTGCGTGAGATTGCGAAA-
Pax6#MA0069.120.01560687.428810.9868519CTGTTGCGTAACTCATGCGTGAA-
RUNX1#MA0002.220.01771868.434050.9963089CTGTTGCGTGTCTGTGGTTT+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:9-CTGTTGCGT&oldid=2134073"