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MacroAPE 1083:TTAAGCGGC,motif366: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;80.982;79.346;53.988;603.684!2;39.264;42.536;91.616;644.584!3;584.052;53.17;72.802;107.976!4;674.85;41.718;58.078;43.354!5;38.446;23.722;694...")
 
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828-111C9;0.315875!10788-110H5;0.255604!10792-110H9;0.83014!10765-110E9;0.224559!10829-111D1;0.90259!10830-111D2;0.595141!10831-111D3;0.823226!10832-111D4;0.767319!10833-111D5;0.790737!10764-110E8;0.936124!10770-110F5;0.544578!10399-106A3;0.473279!10400-106A4;0.98935!10405-106A9;0.888794!10834-111D6;0.88616!10835-111D7;0.643723!10836-111D8;0.661372!10837-111D9;0.455398!10699-109G6;0.471472!10802-111A1;0.84065!10796-110I4;0.893503!10010-101C1;0.829285!10810-111A9;0.32775!10421-106C7;0.562069!10708-109H6;0.756261!12235-129G3;0.66509!12236-129G4;0.152472!12237-129G5;0.751506!10167-103B5;0.107739!10151-102I7;0.671639!10428-106D5;0.62916!10795-110I3;0.203812!10805-111A4;0.851504!10052-101G7;0.827735!10189-103D9;0.671624!10589-108D4;0.539028!10425-106D2;0.562342!10427-106D4;0.421498!10702-109G9;0.543585!10432-106D9;0.842075!10496-107C1;0.821205!10718-109I7;0.294942!10011-101C2;0.662266!10053-101G8;0.839588!10686-109F2;0.848794!10084-102B3;0.133322!10012-101C3;0.847271!10085-102B4;0.900645!10482-107A5;0.996356!10419-106C5;0.937203!10080-102A8;0.953836!10760-110E4;0.404933!10709-109H7;0.8088!10710-109H8;0.463646!10703-109H1;0.627157!10719-109I8;0.816914!10642-109A3;0.555849!10177-103C6;0.139247!10164-103B2;0.851595!10173-103C2;0.700418!10166-103B4;0.863563!10083-102B2;0.53765!10188-103D8;0.85583!10552-107I3;0.946344!10553-107I4;0.758081!10013-101C4;0.957664!10536-107G5;0.678566!10618-108G6;0.939998!10423-106C9;0.492632!10785-110H2;0.822664!12238-129G6;0.693727!12239-129G7;0.149744!12240-129G8;0.609243!10416-106C2;0.207145!10801-110I9;0.56579!10766-110F1;0.504062!10824-111C5;0.51278!10825-111C6;0.788781!10826-111C7;0.986254!10454-106G4;0.78838!10409-106B4;0.990257!10638-108I8;0.977564!10636-108I6;0.617856!10513-107D9;0.918623!10420-106C6;0.973054!10082-102B1;0.214077!10014-101C5;0.69378!10070-101I7;0.355109!10452-106G2;0.349941!10453-106G3;0.546896!10449-106F8;0.96049!10042-101F6;0.800667!10069-101I6;0.9!10193-103E4;0.181336!10631-108I1;0.969356!10438-106E6;0.853972!10488-107B2;0.884298!10196-103E7;0.778883!10071-101I8;0.803553!10071-101I8;0.223268!10041-101F5;0.501495!10451-106G1;0.992569!10450-106F9;0.455677!10604-108F1;0.436947!10605-108F2;0.817551!10606-108F3;0.806208!10603-108E9;0.686271!10497-107C2;0.551288!10448-106F7;0.533448!10643-109A4;0.427231!10426-106D3;0.471987!10431-106D8;0.685388!10197-103E8;0.279387!10443-106F2;0.617987!10815-111B5;0.395162!10816-111B6;0.714972!10817-111B7;0.614595!10015-101C6;0.749206!10410-106B5;0.277516!10054-101G9;0.739448!10758-110E2;0.600193!10711-109H9;0.549798!10040-101F4;0.363757!10470-106I2;0.842239!10415-106C1;0.926265!10198-103E9;0.578906!10614-108G2;0.35522!10612-108F9;0.637503!10549-107H9;0.818793!10615-108G3;0.240391!10487-107B1;0.682173!10433-106E1;0.845943!10688-109F4;0.310528!10444-106F3;0.908999!10444-106F3;0.466521!10485-107A8;0.538931!10413-106B8;0.912148!10175-103C4;0.573428!10161-103A8;0.924386!12131-128D7;0.498702!10624-108H3;0.0662995!10712-109I1;0.415799!10205-103F7;0.471865!10206-103F8;0.91363!10207-103F9;0.756262!10050-101G5;0.360156!10051-101G6;0.290473!10016-101C7;0.315355!10046-101G1;0.857321!10778-110G4;0.796462!10633-108I3;0.840353!10818-111B8;0.132518!10819-111B9;0.329582!10820-111C1;0.362909!10484-107A7;0.302416!10808-111A7;0.441517!10169-103B7;0.623377!10153-102I9;0.706334!13425-144D5;0.616218!13433-144E4;0.761758!13437-144E8;0.481006!11904-125F5;0.573341!11905-125F6;0.927553!10039-101F3;0.858072!10791-110H8;0.846324!10017-101C8;0.2089!10045-101F9;0.452503!10509-107D5;0.824399!10839-111E2;0.298829!10692-109F8;0.321905!10079-102A7;0.399848!10078-102A6;0.296356!10721-110A1;0.272049!10569-108B2;0.883492!10570-108B3;0.68979!10571-108B4;0.400522!10647-109A8;0.76359!10752-110D5;0.0687539!10782-110G8;0.620911!10726-110A6;0.758015!10018-101C9;0.358084!10086-102B5;0.0879654!10182-103D2;0.043484!10165-103B3;0.663787!10499-107C4;0.695393!10408-106B3;0.880543!10019-101D1;0.456656!10068-101I5;0.607139!10075-102A3;0.849536!10077-102A5;0.373465!10727-110A7;0.48112!10775-110G1;0.506704!10412-106B7;0.906562!12231-129F8;0.427308!12232-129F9;0.721499!12233-129G1;0.803665!12234-129G2;0.782289!10414-106B9;0.812505!10170-103B8;0.36804!10183-103D3;0.866551!10150-102I6;0.881009!10174-103C3;0.659443!10155-103A2;0.883218!10038-101F2;0.648569!10838-111E1;0.865923!10759-110E3;0.055997!10514-107E1;0.453491!10465-106H6;0.55333!10691-109F7;0.94257!10843-111E6;0.742932!10844-111E7;0.371115!11747-123G1;0.194477!11748-123G2;0.110208!11749-123G3;0.437425!11750-123G4;0.126498!11751-123G5;0.358618!11840-124H4;0.287023!11752-123G6;0.435192!11753-123G7;0.697348!11754-123G8;0.47303!11755-123G9;0.452333!11756-123H1;0.793107!11833-124G6;0.651896!11760-123H5;0.615821!11836-124G9;0.346736!11758-123H3;0.762521!11835-124G8;0.86878!11762-123H7;0.934221!11838-124H2;0.822106!11757-123H2;0.968459!11759-123H4;0.544253!11761-123H6;0.713026!11842-124H6;0.62458!11837-124H1;0.601028!10568-108B1;0.571902!13230-141I8;0.951999!13231-141I9;0.348847!10696-109G3;0.364367!10493-107B7;0.0154541!10494-107B8;0.909482!10850-111F4;0.645058!10851-111F5;0.160652!10852-111F6;0.695515!10853-111F7;0.673664!10854-111F8;0.231986!10855-111F9;0.0435567!10856-111G1;0.918667!10847-111F1;0.110095!10846-111E9;0.174966!10848-111F2;0.448196!10845-111E8;0.950034!10857-111G2;0.956417!10858-111G3;0.860056!10156-103A3;0.955117!11901-125F2;0.650351!11902-125F3;0.820984!11903-125F4;0.7964!10689-109F5;0.665917!10648-109A9;0.368557!10784-110H1;0.417017!10744-110C6;0.5709!10772-110F7;0.386702!10474-106I6;0.823539!10600-108E6;0.128111!10684-109E9;0.357894!12226-129F3;0.212945!12227-129F4;0.574427!10508-107D4;0.0715207!10539-107G8;0.274672!10607-108F4;0.715215!10555-107I6;0.318253!10774-110F9;0.760209!10637-108I7;0.841065!10663-109C6;0.682686!10728-110A8;0.221946!10729-110A9;0.198129!10430-106D7;0.97199!10730-110B1;0.527662!10813-111B3;0.46402!10812-111B2;0.5617!10037-101F1;0.380584!10172-103C1;0.844302!10163-103B1;0.770238!10076-102A4;0.529339!10073-102A1;0.883713!10036-101E9;0.536943!10195-103E6;0.868729!10277-104E7;0.823848!10434-106E2;0.665352!10550-107I1;0.202891!10545-107H5;0.771901!10544-107H4;0.886252!10704-109H2;0.722043!10510-107D6;0.621894!10558-107I9;0.00653874!10020-101D2;0.454983!10732-110B3;0.990441!10049-101G4;0.161058!10698-109G5;0.10249!10437-106E5;0.566386!10417-106C3;0.799566!10035-101E8;0.462761!10171-103B9;0.799225!10157-103A4;0.79267!10034-101E7;0.662777!10072-101I9;0.815465!10199-103F1;0.441474!10200-103F2;0.126942!10697-109G4;0.468911!10723-110A3;0.714683!10179-103C8;0.441153!10160-103A7;0.480474!10180-103C9;0.364419!10162-103A9;0.887632!10021-101D3;0.775557!10840-111E3;0.409175!10706-109H4;0.526094!10033-101E6;0.149166!10032-101E5;0.82919!10490-107B4;0.892791!10439-106E7;0.850722!10022-101D4;0.721135!10176-103C5;0.819669!10469-106I1;0.582604!10067-101I4;0.655532!10411-106B6;0.947232!10471-106I3;0.584484!10030-101E3;0.523634!10475-106I7;0.964194!10787-110H4;0.540119!10477-106I9;0.559333!10695-109G2;0.027756!11771-123I7;0.166318!11772-123I8;0.71485!11773-123I9;0.676745!10093-102C3;0.630399!10442-106F1;0.0494222!10442-106F1;0.236338!10201-103F3;0.15122!10639-108I9;0.631366!11843-124H7;0.685477!11841-124H5;0.68471!10693-109F9;0.900288!10436-106E4;0.405303!10483-107A6;0.845034!10282-104F3;0.414056!10023-101D5;0.24464!10066-101I3;0.271249!10065-101I2;0.217385!10800-110I8;0.314002!10610-108F7;0.502776!10841-111E4;0.340155!10541-107H1;0.540171!10842-111E5;0.166939!10562-108A4;0.452198!10024-101D6;0.303911!10064-101I1;0.160793!10609-108F6;0.0797845!10048-101G3;0.543407!10781-110G7;0.667858!10181-103D1;0.708024!10159-103A6;0.790355!10056-101H2;0.482082!10737-110B8;0.934597!10025-101D7;0.621907!10044-101F8;0.434753!10424-106D1;0.85941!10463-106H4;0.376534!10616-108G4;0.91505!10486-107A9;0.909306!10062-101H8;0.701053!10202-103F4;0.95238!10158-103A5;0.219592!10441-106E9;0.546675!10031-101E4;0.176702!10063-101H9;0.955017!10063-101H9;0.393122!11763-123H8;0.408253!11765-123I1;0.285693!11768-123I4;0.287379!10807-111A6;0.150299!10790-110H7;0.577192!10798-110I6;0.6696!10786-110H3;0.901907!10591-108D6;0.222563!10593-108D8;0.313843!10590-108D5;0.213976!10026-101D8;0.193277!10096-102C6;0.768538!10168-103B6;0.195092!10154-103A1;0.892023!10209-103G2;0.572424!10061-101H7;0.136901!10027-101D9;0.552815!10043-101F7;0.327731!10783-110G9;0.139361!10028-101E1;0.347576!10060-101H6;0.389606!10203-103F5;0.603127!10059-101H5;0.0906039!10047-101G2;0.077492!10029-101E2;0.186949!10058-101H4;0.451034!10418-106C4;0.456193!10492-107B6;0.129635!10694-109G1;0.145672!10797-110I5;0.0892541!10057-101H3;0.879763!10100-102D1;0.360104!10055-101H1;0.806875!10204-103F6;0.868489!10191-103E2;0.508198!10563-108A5;0.515416
|name=TTAAGCGGC,motif366,CNhs13804,T:818.0(28.28%),B:12857.9(18.77%),P:1e-34
|name=TTAAGCGGC,motif366,CNhs13804,T:818.0(28.28%),B:12857.9(18.77%),P:1e-34
|tomtom_result=Nkx3-2#MA0122.1;0;0.00165673;0.788602;1;9;TTAAGCGGC;TTAAGTGGA;+!bap#MA0211.1;0;0.00829692;3.94934;1;7;TTAAGCGGC;TTAAGTG;+!YAP6#MA0418.1;11;0.00896543;4.26755;1;9;TTAAGCGGC;GGTCTGATTACGTAAGCGAC;+!GIS1#MA0306.1;0;0.0129487;6.16359;1;9;TTAAGCGGC;TTTAGGGGT;-!YDR026C#MA0421.1;1;0.0146201;6.95915;1;9;TTAAGCGGC;TTTACCCGGC;+!ceh-22#MA0264.1;2;0.0156361;7.44279;1;9;TTAAGCGGC;TTTCAAGTGGT;-!Nkx2-5#MA0063.1;0;0.019013;9.05021;1;7;TTAAGCGGC;TTAATTG;+!UME6#MA0412.1;1;0.0194841;9.27441;1;9;TTAAGCGGC;AATTAGCCGCCGA;-
}}
}}

Latest revision as of 13:31, 7 September 2012

Full Name: TTAAGCGGC,motif366,CNhs13804,T:818.0(28.28%),B:12857.9(18.77%),P:1e-34

Motif matrix
POACGT
180.98279.34653.988603.684
239.26442.53691.616644.584
3584.05253.1772.802107.976
4674.8541.71858.07843.354
538.44623.722694.48261.35
698.16664.21640.914.724
770.34867.894547.242132.516
877.7153.17624.13462.986
930.266694.48253.98839.264

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Nkx3-2#MA0122.100.001656730.78860219TTAAGCGGCTTAAGTGGA+
bap#MA0211.100.008296923.9493417TTAAGCGGCTTAAGTG+
YAP6#MA0418.1110.008965434.2675519TTAAGCGGCGGTCTGATTACGTAAGCGAC+
GIS1#MA0306.100.01294876.1635919TTAAGCGGCTTTAGGGGT-
YDR026C#MA0421.110.01462016.9591519TTAAGCGGCTTTACCCGGC+
ceh-22#MA0264.120.01563617.4427919TTAAGCGGCTTTCAAGTGGT-
Nkx2-5#MA0063.100.0190139.0502117TTAAGCGGCTTAATTG+
UME6#MA0412.110.01948419.2744119TTAAGCGGCAATTAGCCGCCGA-
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