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MacroAPE 1083:PRGR f1: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;25.565217391304365;0.0;7.478260869565222;4.956521739130448!2;0.0;0.8695652173913041;34.69565217391306;2.434782608695651!3;27.130434782608702...")
 
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4-106H5;0.230176!10827-111C8;0.225263!10789-110H6;0.166346!10828-111C9;0.211846!10788-110H5;0.490404!10792-110H9;0.0563003!10765-110E9;0.0903849!10829-111D1;0.00921313!10830-111D2;0.365857!10831-111D3;0.0147543!10832-111D4;0.16787!10833-111D5;0.0664916!10764-110E8;0.0988548!10770-110F5;0.0330099!10399-106A3;0.172105!10400-106A4;0.0509144!10405-106A9;0.0432205!10834-111D6;0.04344!10835-111D7;0.248779!10836-111D8;0.121112!10837-111D9;0.0614928!10699-109G6;0.19761!10802-111A1;0.0349259!10796-110I4;0.0148308!10010-101C1;0.969584!10810-111A9;0.397091!10421-106C7;0.94011!10708-109H6;0.130466!12235-129G3;0.848498!12236-129G4;0.228745!12237-129G5;0.408125!10167-103B5;0.244374!10151-102I7;0.797099!10428-106D5;0.94123!10795-110I3;0.229361!10805-111A4;0.375072!10052-101G7;0.827409!10189-103D9;0.895161!10589-108D4;0.522942!10425-106D2;0.991962!10427-106D4;0.894999!10702-109G9;0.199487!10432-106D9;0.255483!10496-107C1;0.994264!10718-109I7;0.390838!10011-101C2;0.0909336!10053-101G8;0.664527!10686-109F2;0.183177!10084-102B3;0.0687019!10012-101C3;0.960578!10085-102B4;0.853553!10482-107A5;0.611438!10419-106C5;0.807358!10080-102A8;0.873208!10760-110E4;0.481124!10709-109H7;0.65179!10710-109H8;0.719105!10703-109H1;0.959421!10719-109I8;0.773872!10642-109A3;0.995257!10177-103C6;0.538693!10164-103B2;0.604547!10173-103C2;0.762027!10166-103B4;0.514268!10083-102B2;0.760425!10188-103D8;0.997404!10552-107I3;0.95972!10553-107I4;0.526018!10013-101C4;0.319706!10536-107G5;0.612695!10618-108G6;0.208478!10423-106C9;0.873907!10785-110H2;0.881326!12238-129G6;0.735809!12239-129G7;0.344802!12240-129G8;0.0650015!10416-106C2;0.230629!10801-110I9;0.187381!10766-110F1;0.0686406!10824-111C5;0.0607768!10825-111C6;0.756666!10826-111C7;0.804401!10454-106G4;0.743715!10409-106B4;0.991041!10638-108I8;0.0672917!10636-108I6;0.499475!10513-107D9;0.680723!10420-106C6;0.921763!10082-102B1;0.680292!10014-101C5;0.904803!10070-101I7;0.992914!10452-106G2;0.751554!10453-106G3;0.15487!10449-106F8;0.292607!10042-101F6;0.190198!10069-101I6;0.983682!10193-103E4;0.217336!10631-108I1;0.900587!10438-106E6;0.113068!10488-107B2;0.848116!10196-103E7;0.519219!10071-101I8;0.274217!10071-101I8;0.82827!10041-101F5;0.626327!10451-106G1;0.748959!10450-106F9;0.623656!10604-108F1;0.563322!10605-108F2;0.760411!10606-108F3;0.345143!10603-108E9;0.547115!10497-107C2;0.913835!10448-106F7;0.928675!10643-109A4;0.70253!10426-106D3;0.664207!10431-106D8;0.431808!10197-103E8;0.474075!10443-106F2;0.227287!10815-111B5;0.0815484!10816-111B6;0.7886!10817-111B7;0.76939!10015-101C6;0.736268!10410-106B5;0.339754!10054-101G9;0.841348!10758-110E2;0.276176!10711-109H9;0.186162!10040-101F4;0.945313!10470-106I2;0.7104!10415-106C1;0.773697!10198-103E9;0.353536!10614-108G2;0.988361!10612-108F9;0.712407!10549-107H9;0.903791!10615-108G3;0.885391!10487-107B1;0.962911!10433-106E1;0.938809!10688-109F4;0.604219!10444-106F3;0.586072!10444-106F3;0.762342!10485-107A8;0.978818!10413-106B8;0.589234!10175-103C4;0.486253!10161-103A8;0.864298!12131-128D7;0.969991!10624-108H3;0.10454!10712-109I1;0.41123!10205-103F7;0.0261474!10206-103F8;0.315215!10207-103F9;0.220722!10050-101G5;0.401461!10051-101G6;7.37974e-06!10016-101C7;0.0351013!10046-101G1;0.0792281!10778-110G4;0.291885!10633-108I3;0.135833!10818-111B8;0.682228!10819-111B9;0.860025!10820-111C1;0.86244!10484-107A7;0.897896!10808-111A7;0.448274!10169-103B7;0.0993726!10153-102I9;0.784892!13425-144D5;0.921229!13433-144E4;0.668197!13437-144E8;0.813511!11904-125F5;0.836992!11905-125F6;0.0633841!10039-101F3;0.135534!10791-110H8;0.764822!10017-101C8;0.481645!10045-101F9;0.902548!10509-107D5;0.530816!10839-111E2;0.797515!10692-109F8;0.169606!10079-102A7;0.34373!10078-102A6;0.226461!10721-110A1;0.0251445!10569-108B2;0.434343!10570-108B3;0.000295342!10571-108B4;0.0126405!10647-109A8;0.0288607!10752-110D5;0.971236!10782-110G8;0.622352!10726-110A6;0.531935!10018-101C9;0.958073!10086-102B5;0.383232!10182-103D2;0.207341!10165-103B3;0.707616!10499-107C4;0.901378!10408-106B3;0.444458!10019-101D1;0.210384!10068-101I5;0.779686!10075-102A3;0.849891!10077-102A5;0.829886!10727-110A7;0.584535!10775-110G1;0.191183!10412-106B7;0.093126!12231-129F8;0.665073!12232-129F9;0.646246!12233-129G1;0.446861!12234-129G2;0.282269!10414-106B9;0.409104!10170-103B8;0.93188!10183-103D3;0.494862!10150-102I6;0.701932!10174-103C3;0.72727!10155-103A2;0.948657!10038-101F2;0.900447!10838-111E1;0.96613!10759-110E3;0.957415!10514-107E1;0.814317!10465-106H6;0.60502!10691-109F7;0.886714!10843-111E6;0.434704!10844-111E7;0.916932!11747-123G1;0.994511!11748-123G2;0.51406!11749-123G3;0.344855!11750-123G4;0.268147!11751-123G5;0.141053!11840-124H4;0.185198!11752-123G6;0.136266!11753-123G7;0.0089615!11754-123G8;0.0831799!11755-123G9;0.347815!11756-123H1;0.678671!11833-124G6;0.395951!11760-123H5;0.303156!11836-124G9;0.633393!11758-123H3;0.696607!11835-124G8;0.0722025!11762-123H7;0.26169!11838-124H2;0.0960149!11757-123H2;0.0701892!11759-123H4;0.359063!11761-123H6;0.315649!11842-124H6;0.0937647!11837-124H1;0.113574!10568-108B1;0.250616!13230-141I8;0.140027!13231-141I9;0.225472!10696-109G3;0.198753!10493-107B7;0.691811!10494-107B8;0.466222!10850-111F4;0.26326!10851-111F5;0.416933!10852-111F6;0.347419!10853-111F7;0.781336!10854-111F8;0.299998!10855-111F9;0.434965!10856-111G1;0.918438!10847-111F1;0.307903!10846-111E9;0.750009!10848-111F2;0.502518!10845-111E8;0.367643!10857-111G2;0.986256!10858-111G3;0.773189!10156-103A3;0.269964!11901-125F2;0.743239!11902-125F3;0.0550383!11903-125F4;0.152304!10689-109F5;0.166012!10648-109A9;0.380776!10784-110H1;0.17269!10744-110C6;0.570689!10772-110F7;0.247497!10474-106I6;0.0613088!10600-108E6;0.176719!10684-109E9;0.986894!12226-129F3;0.629756!12227-129F4;0.247155!10508-107D4;0.790768!10539-107G8;0.663973!10607-108F4;0.576125!10555-107I6;0.766485!10774-110F9;0.694412!10637-108I7;0.656298!10663-109C6;0.485403!10728-110A8;0.956468!10729-110A9;0.537972!10430-106D7;0.403097!10730-110B1;0.162046!10813-111B3;0.506689!10812-111B2;0.909559!10037-101F1;0.0393687!10172-103C1;0.751821!10163-103B1;0.759253!10076-102A4;0.869286!10073-102A1;0.720643!10036-101E9;0.538031!10195-103E6;0.738775!10277-104E7;0.759357!10434-106E2;0.43641!10550-107I1;0.426012!10545-107H5;0.401331!10544-107H4;0.51943!10704-109H2;0.517609!10510-107D6;0.546741!10558-107I9;0.40875!10020-101D2;0.964642!10732-110B3;0.90301!10049-101G4;0.432106!10698-109G5;0.224818!10437-106E5;0.960311!10417-106C3;0.484336!10035-101E8;0.731454!10171-103B9;0.811328!10157-103A4;0.691016!10034-101E7;0.712312!10072-101I9;0.831723!10199-103F1;0.558184!10200-103F2;0.331419!10697-109G4;0.104473!10723-110A3;0.742371!10179-103C8;0.52148!10160-103A7;0.951152!10180-103C9;0.831985!10162-103A9;0.542242!10021-101D3;0.855514!10840-111E3;0.908831!10706-109H4;0.214209!10033-101E6;0.11696!10032-101E5;0.908941!10490-107B4;0.831144!10439-106E7;0.729685!10022-101D4;0.711971!10176-103C5;0.739!10469-106I1;0.611686!10067-101I4;0.694812!10411-106B6;0.898303!10471-106I3;0.174978!10030-101E3;0.262797!10475-106I7;0.714963!10787-110H4;0.922291!10477-106I9;0.859085!10695-109G2;0.698633!11771-123I7;0.652395!11772-123I8;0.318215!11773-123I9;0.375103!10093-102C3;0.541856!10442-106F1;0.680183!10442-106F1;0.519791!10201-103F3;0.191319!10639-108I9;0.550423!11843-124H7;0.713388!11841-124H5;0.1927!10693-109F9;0.624916!10436-106E4;0.827135!10483-107A6;0.808478!10282-104F3;0.84614!10023-101D5;0.015916!10066-101I3;0.0299801!10065-101I2;0.0839512!10800-110I8;0.243435!10610-108F7;0.886779!10841-111E4;0.99197!10541-107H1;0.874495!10842-111E5;0.581516!10562-108A4;0.682901!10024-101D6;0.648008!10064-101I1;0.851358!10609-108F6;0.654333!10048-101G3;0.793889!10781-110G7;0.482561!10181-103D1;0.63691!10159-103A6;0.85334!10056-101H2;0.836611!10737-110B8;0.72167!10025-101D7;0.261526!10044-101F8;0.357258!10424-106D1;0.427789!10463-106H4;0.0693931!10616-108G4;0.642874!10486-107A9;0.623192!10062-101H8;0.753738!10202-103F4;0.915724!10158-103A5;0.623289!10441-106E9;0.887533!10031-101E4;0.54487!10063-101H9;0.810782!10063-101H9;0.585019!11763-123H8;0.789363!11765-123I1;0.379003!11768-123I4;0.55604!10807-111A6;0.178699!10790-110H7;0.556878!10798-110I6;0.546154!10786-110H3;0.396251!10591-108D6;0.463584!10593-108D8;0.314518!10590-108D5;0.72877!10026-101D8;0.670989!10096-102C6;0.936324!10168-103B6;0.569036!10154-103A1;0.982969!10209-103G2;0.903727!10061-101H7;0.272506!10027-101D9;0.49338!10043-101F7;0.185818!10783-110G9;0.462963!10028-101E1;0.848546!10060-101H6;0.865373!10203-103F5;0.831237!10059-101H5;0.102619!10047-101G2;0.112092!10029-101E2;0.8674!10058-101H4;0.704714!10418-106C4;0.283831!10492-107B6;0.71281!10694-109G1;0.568139!10797-110I5;0.991061!10057-101H3;0.729852!10100-102D1;0.0697168!10055-101H1;0.786468!10204-103F6;0.805108!10191-103E2;0.499257!10563-108A5;0.968306
|name=PRGR_f1
|name=PRGR_f1
|tomtom_result=MGA1#MA0336.1;8;0.000846082;0.402735;0.424521;7;AGAACAG;AGGACTATAGAACACTCTAAA;+!NR3C1#MA0113.1;2;0.00128431;0.611334;0.424521;7;AGAACAG;TCAGGACATAATGTTCCC;-!lin-14#MA0261.1;-1;0.00150654;0.717111;0.424521;6;AGAACAG;GAACAC;+!Ar#MA0007.1;3;0.00184597;0.878681;0.424521;7;AGAACAG;ATAAGAACACCCTGTACCCGCC;+!ROX1#MA0371.1;1;0.00527006;2.50855;0.835971;7;AGAACAG;GAGAACAATGGA;-!HSF1#MA0319.1;2;0.00689214;3.28066;0.937094;6;AGAACAG;ATGGAACA;+!D#MA00445.1;0;0.00999229;4.75633;0.999747;7;AGAACAG;AGAACAATGGA;-!caup#MA0217.1;-1;0.0121627;5.78944;0.999747;5;AGAACAG;TAACA;+!TAL1::TCF3#MA0091.1;0;0.0122597;5.8356;0.999747;7;AGAACAG;CGACCATCTGTT;+!ara#MA0210.1;-1;0.0134158;6.38593;0.999747;5;AGAACAG;TAACA;+!kni#MA0451.1;5;0.0166636;7.93185;0.999747;7;AGAACAG;AAACTAGAGCAC;+!GAL4#MA0299.1;3;0.0203271;9.67572;0.999747;7;AGAACAG;CGGGGAACAGTACTC;+
}}
}}

Latest revision as of 13:27, 7 September 2012

Full Name: PRGR_f1

Motif matrix
POACGT
125.5652173913043650.07.4782608695652224.956521739130448
20.00.869565217391304134.695652173913062.434782608695651
327.1304347826087020.09.3043478260869681.5652173913043472
438.00.00.00.0
50.782608695652173637.2173913043478350.00.0
633.391304347826110.00.04.608695652173896
75.8695652173913027.17391304347825814.30434782608696610.652173913043473

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
MGA1#MA0336.180.0008460820.4027350.4245217AGAACAGAGGACTATAGAACACTCTAAA+
NR3C1#MA0113.120.001284310.6113340.4245217AGAACAGTCAGGACATAATGTTCCC-
lin-14#MA0261.1-10.001506540.7171110.4245216AGAACAGGAACAC+
Ar#MA0007.130.001845970.8786810.4245217AGAACAGATAAGAACACCCTGTACCCGCC+
ROX1#MA0371.110.005270062.508550.8359717AGAACAGGAGAACAATGGA-
HSF1#MA0319.120.006892143.280660.9370946AGAACAGATGGAACA+
D#MA00445.100.009992294.756330.9997477AGAACAGAGAACAATGGA-
caup#MA0217.1-10.01216275.789440.9997475AGAACAGTAACA+
TAL1::TCF3#MA0091.100.01225975.83560.9997477AGAACAGCGACCATCTGTT+
ara#MA0210.1-10.01341586.385930.9997475AGAACAGTAACA+
kni#MA0451.150.01666367.931850.9997477AGAACAGAAACTAGAGCAC+
GAL4#MA0299.130.02032719.675720.9997477AGAACAGCGGGGAACAGTACTC+
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