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MacroAPE 1083:Motif GANTTC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;15408;0!02;15408;0;0;0!03;3852;3852;3852;3852!04;0;0;0;15408!05;0;0;0;15408!06;0;15408;0;0 |macroape_1083_sample_pvalues=11376-118A8;0...")
 
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895!10809-111A8;0.00257454!10597-108E3;0.146031!10717-109I6;0.00599861!10455-106G5;0.313889!10534-107G3;0.290135!10429-106D6;0.942218!10464-106H5;0.425743!10827-111C8;0.933627!10789-110H6;0.0365305!10828-111C9;0.151475!10788-110H5;0.177193!10792-110H9;0.995256!10765-110E9;0.0996595!10829-111D1;0.258504!10830-111D2;0.542418!10831-111D3;0.308827!10832-111D4;0.295484!10833-111D5;0.252435!10764-110E8;0.52227!10770-110F5;0.722045!10399-106A3;0.66353!10400-106A4;0.588153!10405-106A9;0.503198!10834-111D6;0.51078!10835-111D7;0.440956!10836-111D8;0.808408!10837-111D9;0.874507!10699-109G6;0.819966!10802-111A1;0.167065!10796-110I4;0.513386!10010-101C1;0.866579!10810-111A9;0.40214!10421-106C7;0.455364!10708-109H6;0.160516!12235-129G3;0.385261!12236-129G4;0.284932!12237-129G5;0.10226!10167-103B5;0.134681!10151-102I7;0.199833!10428-106D5;0.225539!10795-110I3;0.72933!10805-111A4;0.971837!10052-101G7;0.0575969!10189-103D9;0.59117!10589-108D4;0.045295!10425-106D2;0.176425!10427-106D4;0.0761229!10702-109G9;0.0453623!10432-106D9;0.552945!10496-107C1;0.492764!10718-109I7;0.86333!10011-101C2;0.520083!10053-101G8;0.500758!10686-109F2;0.012876!10084-102B3;0.0889915!10012-101C3;0.147115!10085-102B4;0.167862!10482-107A5;0.0452669!10419-106C5;0.0686964!10080-102A8;0.440135!10760-110E4;0.582313!10709-109H7;0.279825!10710-109H8;0.373252!10703-109H1;0.288156!10719-109I8;0.0223316!10642-109A3;0.0749789!10177-103C6;0.0863806!10164-103B2;0.307285!10173-103C2;0.218507!10166-103B4;0.123451!10083-102B2;0.183265!10188-103D8;0.0556636!10552-107I3;0.175285!10553-107I4;0.303219!10013-101C4;0.259689!10536-107G5;0.462834!10618-108G6;0.7503!10423-106C9;0.519892!10785-110H2;0.36377!12238-129G6;0.52841!12239-129G7;0.397109!12240-129G8;0.288698!10416-106C2;0.0551916!10801-110I9;0.717513!10766-110F1;0.27653!10824-111C5;0.551999!10825-111C6;0.579451!10826-111C7;0.667575!10454-106G4;0.678484!10409-106B4;0.56714!10638-108I8;0.395596!10636-108I6;0.669606!10513-107D9;0.459228!10420-106C6;0.425268!10082-102B1;0.14403!10014-101C5;0.928236!10070-101I7;0.432206!10452-106G2;0.504045!10453-106G3;0.525097!10449-106F8;0.809843!10042-101F6;0.726595!10069-101I6;0.291289!10193-103E4;0.873194!10631-108I1;0.146039!10438-106E6;0.537113!10488-107B2;0.185556!10196-103E7;0.0638667!10071-101I8;0.661025!10071-101I8;0.777439!10041-101F5;0.163771!10451-106G1;0.340819!10450-106F9;0.628203!10604-108F1;0.290086!10605-108F2;0.687164!10606-108F3;0.585372!10603-108E9;0.576823!10497-107C2;0.571759!10448-106F7;0.882749!10643-109A4;0.860945!10426-106D3;0.200441!10431-106D8;0.483919!10197-103E8;0.883288!10443-106F2;0.868866!10815-111B5;0.403917!10816-111B6;0.462784!10817-111B7;0.663725!10015-101C6;0.424324!10410-106B5;0.748425!10054-101G9;0.149216!10758-110E2;0.476854!10711-109H9;0.403543!10040-101F4;0.538464!10470-106I2;0.207755!10415-106C1;0.42418!10198-103E9;0.471735!10614-108G2;0.572734!10612-108F9;0.122131!10549-107H9;0.533016!10615-108G3;0.446167!10487-107B1;0.121659!10433-106E1;0.977019!10688-109F4;0.405132!10444-106F3;0.326475!10444-106F3;0.315081!10485-107A8;0.296173!10413-106B8;0.433883!10175-103C4;0.785769!10161-103A8;0.313025!12131-128D7;0.38577!10624-108H3;0.043516!10712-109I1;0.592453!10205-103F7;0.0961152!10206-103F8;0.903215!10207-103F9;0.752655!10050-101G5;0.35103!10051-101G6;0.0842621!10016-101C7;0.250656!10046-101G1;0.430127!10778-110G4;0.69665!10633-108I3;0.104865!10818-111B8;0.264261!10819-111B9;0.442213!10820-111C1;0.476665!10484-107A7;0.471448!10808-111A7;0.342917!10169-103B7;0.469058!10153-102I9;0.227024!13425-144D5;0.325962!13433-144E4;0.0595883!13437-144E8;0.0249121!11904-125F5;0.0431148!11905-125F6;0.188606!10039-101F3;0.649092!10791-110H8;0.183821!10017-101C8;0.0664772!10045-101F9;0.47545!10509-107D5;0.657638!10839-111E2;0.909125!10692-109F8;0.00274917!10079-102A7;0.270732!10078-102A6;0.591217!10721-110A1;0.288006!10569-108B2;0.126619!10570-108B3;0.65226!10571-108B4;0.283042!10647-109A8;0.587188!10752-110D5;0.439399!10782-110G8;0.795496!10726-110A6;0.640254!10018-101C9;0.420295!10086-102B5;0.26155!10182-103D2;0.990264!10165-103B3;0.265789!10499-107C4;0.261886!10408-106B3;0.358403!10019-101D1;0.820238!10068-101I5;0.183609!10075-102A3;0.202014!10077-102A5;0.216065!10727-110A7;0.0878031!10775-110G1;0.162587!10412-106B7;0.142596!12231-129F8;0.812202!12232-129F9;0.537525!12233-129G1;0.990374!12234-129G2;0.769484!10414-106B9;0.784789!10170-103B8;0.126816!10183-103D3;0.147325!10150-102I6;0.181989!10174-103C3;0.277374!10155-103A2;0.246887!10038-101F2;0.396766!10838-111E1;0.414038!10759-110E3;0.0254159!10514-107E1;0.548555!10465-106H6;0.247537!10691-109F7;0.311985!10843-111E6;0.962697!10844-111E7;0.042035!11747-123G1;0.0649669!11748-123G2;0.0348743!11749-123G3;0.196999!11750-123G4;0.0309569!11751-123G5;0.193027!11840-124H4;0.420956!11752-123G6;0.281535!11753-123G7;0.447318!11754-123G8;0.281988!11755-123G9;0.0239391!11756-123H1;0.000968585!11833-124G6;0.041309!11760-123H5;0.529504!11836-124G9;0.0696327!11758-123H3;0.0703716!11835-124G8;0.572287!11762-123H7;0.340481!11838-124H2;0.384258!11757-123H2;0.451728!11759-123H4;0.0698396!11761-123H6;0.142449!11842-124H6;0.408337!11837-124H1;0.67023!10568-108B1;0.120674!13230-141I8;0.220038!13231-141I9;0.128173!10696-109G3;0.162034!10493-107B7;0.418683!10494-107B8;0.538271!10850-111F4;0.802543!10851-111F5;0.137629!10852-111F6;0.991424!10853-111F7;0.945373!10854-111F8;0.502429!10855-111F9;0.491492!10856-111G1;0.23671!10847-111F1;0.287417!10846-111E9;0.651058!10848-111F2;0.379974!10845-111E8;0.374982!10857-111G2;0.793192!10858-111G3;0.0720637!10156-103A3;0.255881!11901-125F2;0.276633!11902-125F3;0.131825!11903-125F4;0.261849!10689-109F5;0.170164!10648-109A9;0.295216!10784-110H1;0.0628097!10744-110C6;0.655351!10772-110F7;0.296365!10474-106I6;0.71422!10600-108E6;0.0465036!10684-109E9;0.394052!12226-129F3;0.246219!12227-129F4;0.0730877!10508-107D4;0.848938!10539-107G8;0.118709!10607-108F4;0.0120801!10555-107I6;0.0144266!10774-110F9;0.168202!10637-108I7;0.103824!10663-109C6;0.204698!10728-110A8;0.00505695!10729-110A9;0.0781746!10430-106D7;0.784404!10730-110B1;0.864294!10813-111B3;0.087489!10812-111B2;0.645582!10037-101F1;0.841194!10172-103C1;0.212775!10163-103B1;0.243899!10076-102A4;0.349615!10073-102A1;0.125877!10036-101E9;0.131949!10195-103E6;0.109327!10277-104E7;0.191853!10434-106E2;0.104475!10550-107I1;0.208577!10545-107H5;0.211014!10544-107H4;0.515496!10704-109H2;0.416332!10510-107D6;0.317927!10558-107I9;0.852452!10020-101D2;0.745474!10732-110B3;0.643246!10049-101G4;0.901424!10698-109G5;0.0375305!10437-106E5;0.652589!10417-106C3;0.693195!10035-101E8;0.579925!10171-103B9;0.169766!10157-103A4;0.15489!10034-101E7;0.286833!10072-101I9;0.158197!10199-103F1;0.147188!10200-103F2;0.821666!10697-109G4;0.964066!10723-110A3;0.19758!10179-103C8;0.608568!10160-103A7;0.235813!10180-103C9;0.376689!10162-103A9;0.213394!10021-101D3;0.408253!10840-111E3;0.145489!10706-109H4;0.23338!10033-101E6;0.904175!10032-101E5;0.17003!10490-107B4;0.125087!10439-106E7;0.193008!10022-101D4;0.997183!10176-103C5;0.729889!10469-106I1;0.184356!10067-101I4;0.253377!10411-106B6;0.922907!10471-106I3;0.818508!10030-101E3;0.64537!10475-106I7;0.364237!10787-110H4;0.123895!10477-106I9;0.292351!10695-109G2;0.809202!11771-123I7;0.559257!11772-123I8;0.0258205!11773-123I9;0.0235853!10093-102C3;0.0964435!10442-106F1;0.859292!10442-106F1;0.260546!10201-103F3;0.198099!10639-108I9;0.71514!11843-124H7;0.817458!11841-124H5;0.313391!10693-109F9;0.985895!10436-106E4;0.258879!10483-107A6;0.755722!10282-104F3;0.587985!10023-101D5;0.444389!10066-101I3;0.469332!10065-101I2;0.954217!10800-110I8;0.789428!10610-108F7;0.134685!10841-111E4;0.0270023!10541-107H1;0.19512!10842-111E5;0.560248!10562-108A4;0.0433628!10024-101D6;0.314276!10064-101I1;0.260067!10609-108F6;0.650347!10048-101G3;0.253718!10781-110G7;0.808291!10181-103D1;0.255653!10159-103A6;0.493375!10056-101H2;0.614931!10737-110B8;0.385017!10025-101D7;0.161756!10044-101F8;0.0163438!10424-106D1;0.0611592!10463-106H4;0.055629!10616-108G4;0.408061!10486-107A9;0.780869!10062-101H8;0.652259!10202-103F4;0.615401!10158-103A5;0.490345!10441-106E9;0.34784!10031-101E4;0.412934!10063-101H9;0.102852!10063-101H9;0.152107!11763-123H8;0.729368!11765-123I1;0.324443!11768-123I4;0.588216!10807-111A6;0.634288!10790-110H7;0.0885609!10798-110I6;0.16802!10786-110H3;0.288341!10591-108D6;0.0505341!10593-108D8;0.419142!10590-108D5;0.537377!10026-101D8;0.745705!10096-102C6;0.236313!10168-103B6;0.0239347!10154-103A1;0.191896!10209-103G2;0.324823!10061-101H7;0.808078!10027-101D9;0.847361!10043-101F7;0.11812!10783-110G9;0.156759!10028-101E1;0.993665!10060-101H6;0.961702!10203-103F5;0.583902!10059-101H5;0.836034!10047-101G2;0.591668!10029-101E2;0.151596!10058-101H4;0.400255!10418-106C4;0.660991!10492-107B6;0.766736!10694-109G1;0.579004!10797-110I5;0.707246!10057-101H3;0.13495!10100-102D1;0.798724!10055-101H1;0.420866!10204-103F6;0.734804!10191-103E2;0.617528!10563-108A5;0.400884
|name=motif_GANTTC
|name=motif_GANTTC
|tomtom_result=dl_2#MA0023.1;3;0.00398356;1.89618;1;6;GAATTC;GGGGATTTCC;+!SPT23#MA0388.1;2;0.00521066;2.48028;1;6;GAATTC;TTGATTTC;-!NF-kappaB#MA0061.1;2;0.00549046;2.61346;1;6;GAATTC;GGGAATTTCC;+!REL#MA0101.1;3;0.0065181;3.10262;1;6;GAATTC;GGGGATTTCC;+!STAT1#MA0137.2;0;0.0135464;6.4481;1;6;GAATTC;GGTTTCCGGGAAATG;-!che-1#MA0260.1;0;0.0160826;7.65531;1;6;GAATTC;GGTTTC;-!RELA#MA0107.1;3;0.0180633;8.59812;1;6;GAATTC;GGGAATTTCC;+!RXRA::VDR#MA0074.1;8;0.0194081;9.23824;1;6;GAATTC;GGGTCAACGAGTTCA;+
}}
}}

Latest revision as of 13:09, 7 September 2012

Full Name: motif_GANTTC

Motif matrix
POACGT
0100154080
0215408000
033852385238523852
0400015408
0500015408
0601540800

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
dl_2#MA0023.130.003983561.8961816GAATTCGGGGATTTCC+
SPT23#MA0388.120.005210662.4802816GAATTCTTGATTTC-
NF-kappaB#MA0061.120.005490462.6134616GAATTCGGGAATTTCC+
REL#MA0101.130.00651813.1026216GAATTCGGGGATTTCC+
STAT1#MA0137.200.01354646.448116GAATTCGGTTTCCGGGAAATG-
che-1#MA0260.100.01608267.6553116GAATTCGGTTTC-
RELA#MA0107.130.01806338.5981216GAATTCGGGAATTTCC+
RXRA::VDR#MA0074.180.01940819.2382416GAATTCGGGTCAACGAGTTCA+
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