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MacroAPE 1083:8-TTTGCGGAAGC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;58.528;24.552;7.192;157.728!2;0.248;31.0;18.104;198.648!3;25.048;51.832;3.472;167.648!4;4.464;44.144;194.432;4.96!5;17.112;158.968;41.664;30...")
 
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;0.00279325!10414-106B9;0.01539!10170-103B8;0.510729!10183-103D3;0.182765!10150-102I6;0.0981362!10174-103C3;0.105582!10155-103A2;0.00431226!10038-101F2;0.0357275!10838-111E1;0.0221522!10759-110E3;0.433597!10514-107E1;0.055008!10465-106H6;0.137259!10691-109F7;0.051406!10843-111E6;0.519857!10844-111E7;0.93288!11747-123G1;0.663701!11748-123G2;0.931583!11749-123G3;0.221297!11750-123G4;0.602815!11751-123G5;0.913542!11840-124H4;0.405196!11752-123G6;0.032545!11753-123G7;0.146458!11754-123G8;0.280074!11755-123G9;0.787034!11756-123H1;0.0922966!11833-124G6;0.217258!11760-123H5;0.30661!11836-124G9;0.625589!11758-123H3;0.175994!11835-124G8;0.494003!11762-123H7;0.0140717!11838-124H2;0.390336!11757-123H2;0.119148!11759-123H4;0.533289!11761-123H6;0.932125!11842-124H6;0.713196!11837-124H1;0.420766!10568-108B1;0.0687248!13230-141I8;0.554407!13231-141I9;0.0019145!10696-109G3;0.00180495!10493-107B7;0.496071!10494-107B8;0.0336265!10850-111F4;0.961442!10851-111F5;0.0117298!10852-111F6;0.868913!10853-111F7;0.575573!10854-111F8;0.161846!10855-111F9;0.866354!10856-111G1;0.395937!10847-111F1;0.905591!10846-111E9;0.743754!10848-111F2;0.509307!10845-111E8;0.0913731!10857-111G2;0.0481296!10858-111G3;0.459163!10156-103A3;0.661994!11901-125F2;0.111555!11902-125F3;3.09604e-05!11903-125F4;1.4027e-05!10689-109F5;6.8638e-06!10648-109A9;0.967907!10784-110H1;0.492873!10744-110C6;0.838959!10772-110F7;2.70427e-11!10474-106I6;1.56184e-08!10600-108E6;2.64988e-12!10684-109E9;0.375057!12226-129F3;0.245774!12227-129F4;0.686467!10508-107D4;0.104098!10539-107G8;0.872527!10607-108F4;0.847062!10555-107I6;0.593076!10774-110F9;0.608322!10637-108I7;0.0167244!10663-109C6;0.630912!10728-110A8;0.323175!10729-110A9;0.473456!10430-106D7;0.00110761!10730-110B1;5.14916e-05!10813-111B3;0.841706!10812-111B2;0.000172908!10037-101F1;0.001416!10172-103C1;0.0518053!10163-103B1;0.157723!10076-102A4;0.0937136!10073-102A1;0.074275!10036-101E9;0.132755!10195-103E6;0.0424824!10277-104E7;0.0510772!10434-106E2;0.00858967!10550-107I1;0.0349233!10545-107H5;0.499916!10544-107H4;0.134802!10704-109H2;0.0980573!10510-107D6;0.428975!10558-107I9;0.868454!10020-101D2;0.906641!10732-110B3;0.0036278!10049-101G4;0.228917!10698-109G5;0.00235892!10437-106E5;0.409846!10417-106C3;0.333797!10035-101E8;0.251379!10171-103B9;0.0807422!10157-103A4;0.0689614!10034-101E7;0.111295!10072-101I9;0.0747983!10199-103F1;0.0622165!10200-103F2;0.00428457!10697-109G4;6.05491e-06!10723-110A3;0.589435!10179-103C8;0.262836!10160-103A7;0.0213017!10180-103C9;0.21262!10162-103A9;0.134261!10021-101D3;0.290909!10840-111E3;6.38562e-05!10706-109H4;2.6401e-08!10033-101E6;0.258062!10032-101E5;0.101072!10490-107B4;0.0510062!10439-106E7;0.84541!10022-101D4;0.678901!10176-103C5;4.36382e-05!10469-106I1;0.0564611!10067-101I4;0.504238!10411-106B6;1.29364e-06!10471-106I3;0.673983!10030-101E3;0.278734!10475-106I7;0.000146542!10787-110H4;0.907529!10477-106I9;0.223101!10695-109G2;0.934617!11771-123I7;7.93069e-05!11772-123I8;0.868366!11773-123I9;0.647264!10093-102C3;0.0667949!10442-106F1;0.0270926!10442-106F1;0.00550582!10201-103F3;0.00386425!10639-108I9;0.000613975!11843-124H7;0.00232867!11841-124H5;0.174806!10693-109F9;0.628767!10436-106E4;0.421059!10483-107A6;0.099156!10282-104F3;0.824282!10023-101D5;0.00580004!10066-101I3;0.000416825!10065-101I2;9.56379e-05!10800-110I8;8.09314e-08!10610-108F7;0.866361!10841-111E4;0.0115988!10541-107H1;0.704165!10842-111E5;0.746169!10562-108A4;0.595896!10024-101D6;0.189627!10064-101I1;1.58164e-05!10609-108F6;6.90347e-13!10048-101G3;0.267138!10781-110G7;0.000195292!10181-103D1;0.86092!10159-103A6;0.0148894!10056-101H2;0.14328!10737-110B8;0.000228492!10025-101D7;0.0482508!10044-101F8;0.0614918!10424-106D1;0.550029!10463-106H4;1.54598e-10!10616-108G4;0.166095!10486-107A9;0.0653141!10062-101H8;0.0112626!10202-103F4;4.04963e-06!10158-103A5;0.0254787!10441-106E9;0.0487988!10031-101E4;0.70086!10063-101H9;0.0297682!10063-101H9;0.0740804!11763-123H8;3.24446e-07!11765-123I1;0.00179873!11768-123I4;0.00651912!10807-111A6;0.0271063!10790-110H7;0.581707!10798-110I6;0.654!10786-110H3;0.691396!10591-108D6;0.368017!10593-108D8;0.342826!10590-108D5;0.965748!10026-101D8;0.434248!10096-102C6;0.000114766!10168-103B6;0.00189114!10154-103A1;0.0109126!10209-103G2;0.0543239!10061-101H7;9.56924e-07!10027-101D9;7.24484e-06!10043-101F7;2.3971e-07!10783-110G9;0.160922!10028-101E1;0.953543!10060-101H6;0.0240278!10203-103F5;4.53408e-06!10059-101H5;6.16435e-07!10047-101G2;2.9942e-06!10029-101E2;0.25377!10058-101H4;0.00360599!10418-106C4;6.31014e-06!10492-107B6;0.122128!10694-109G1;0.155385!10797-110I5;0.0155779!10057-101H3;0.384424!10100-102D1;1.29487e-06!10055-101H1;0.00344206!10204-103F6;1.42877e-06!10191-103E2;0.00230251!10563-108A5;0.0362007
|name=8-TTTGCGGAAGC,CNhs13468,BestGuess:GABP1+GABP2_f1_HM09(0.736574014983996),T:248.0(8.58%),B:1820.8(3.91%),P:1e-28
|name=8-TTTGCGGAAGC,CNhs13468,BestGuess:GABP1+GABP2_f1_HM09(0.736574014983996),T:248.0(8.58%),B:1820.8(3.91%),P:1e-28
|tomtom_result=RDR1#MA0360.1;-2;8.68132e-05;0.0413231;0.0805805;8;TTTGCGGAAGC;TGCGGAAC;+!SPI1#MA0080.2;-4;0.000205655;0.0978917;0.095445;6;TTTGCGGAAGC;CGGAAG;+!Eip74EF#MA0026.1;-3;0.000695946;0.33127;0.185981;7;TTTGCGGAAGC;CCGGAAG;+!SPIB#MA0081.1;-2;0.00105101;0.500278;0.185981;7;TTTGCGGAAGC;AGAGGAA;+!GCR2#MA0305.1;-4;0.00118047;0.561905;0.185981;7;TTTGCGGAAGC;AGGAAGC;-!HAL9#MA0311.1;-4;0.0012022;0.572245;0.185981;5;TTTGCGGAAGC;CGGAA;+!YER184C#MA0424.1;-1;0.00172405;0.820649;0.213861;8;TTTGCGGAAGC;CTCCGGAA;+!ETS1#MA0098.1;-4;0.00184322;0.877372;0.213861;6;TTTGCGGAAGC;CGGAAA;-!STAT1#MA0137.2;3;0.00249712;1.18863;0.257537;11;TTTGCGGAAGC;CATTTCCCGGAAACC;+!CEBPA#MA0102.2;0;0.003407;1.62173;0.31543;9;TTTGCGGAAGC;ATTGCGAAA;-!YJL103C#MA0427.1;0;0.0037381;1.77934;0.31543;11;TTTGCGGAAGC;TCTCCGGAGCT;-!Stat3#MA0144.1;0;0.0044392;2.11306;0.343374;10;TTTGCGGAAGC;TTCCAGGAAG;+!GABPA#MA0062.2;-3;0.00632411;3.01028;0.377622;8;TTTGCGGAAGC;CCGGAAGTGGC;+!HLF#MA0043.1;1;0.00651562;3.10143;0.377622;11;TTTGCGGAAGC;TATTACGTAACC;-!ELK4#MA0076.1;-2;0.00658922;3.13647;0.377622;9;TTTGCGGAAGC;ACCGGAAGT;+!ELK1#MA0028.1;0;0.00724288;3.44761;0.377622;10;TTTGCGGAAGC;GAGCCGGAAG;+!STB4#MA0391.1;-2;0.00732294;3.48572;0.377622;7;TTTGCGGAAGC;CTCGGAA;+!CEP3#MA0282.1;-2;0.00867724;4.13037;0.383536;8;TTTGCGGAAGC;CTCGGAAA;+!GCR1#MA0304.1;-4;0.00867724;4.13037;0.383536;7;TTTGCGGAAGC;TGGAAGCC;+!CIN5#MA0284.1;-1;0.00955533;4.54834;0.40315;10;TTTGCGGAAGC;TTACGTAATC;+!STP3#MA0396.1;-2;0.0099987;4.75938;0.403515;9;TTTGCGGAAGC;TGCGCTAGC;-!Cebpa#MA0102.1;-1;0.0107477;5.11589;0.406757;10;TTTGCGGAAGC;TTTCGCAATCTT;+!ECM22#MA0292.1;-2;0.0113295;5.39283;0.406757;7;TTTGCGGAAGC;TCCGGAG;-!MZF1_1-4#MA0056.1;-2;0.0120849;5.75243;0.406757;6;TTTGCGGAAGC;TGGGGA;+!SPI1#MA0080.2;-4;0.0130053;6.19051;0.406757;7;TTTGCGGAAGC;AGGAAGT;+!SIP4#MA0380.1;-2;0.0136083;6.47756;0.406757;7;TTTGCGGAAGC;TCCGGAG;-!PDR1#MA0352.1;0;0.0138748;6.60441;0.406757;8;TTTGCGGAAGC;TCCGCGGA;-!GABPA#MA0062.2;-2;0.014023;6.67495;0.406757;9;TTTGCGGAAGC;ACCGGAAGAG;+!ASG1#MA0275.1;-3;0.0149127;7.09845;0.412781;6;TTTGCGGAAGC;CCGGAA;+!STP4#MA0397.1;-2;0.0180531;8.59326;0.439761;9;TTTGCGGAAGC;TGCGCTATC;-!LYS14#MA0325.1;-3;0.0200985;9.56687;0.439761;8;TTTGCGGAAGC;CCGGAATT;+!PDR3#MA0353.1;0;0.0209298;9.96257;0.439761;8;TTTGCGGAAGC;TCCGCGGA;+
}}
}}

Latest revision as of 13:04, 7 September 2012

Full Name: 8-TTTGCGGAAGC,CNhs13468,BestGuess:GABP1+GABP2_f1_HM09(0.736574014983996),T:248.0(8.58%),B:1820.8(3.91%),P:1e-28

Motif matrix
POACGT
158.52824.5527.192157.728
20.24831.018.104198.648
325.04851.8323.472167.648
44.46444.144194.4324.96
517.112158.96841.66430.256
621.3280.248226.1760.248
70.24836.952210.5520.248
8221.46413.3926.6966.448
9235.1049.4240.2483.224
1032.2448.112167.40.248
1114.136155.99215.62462.248

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

RDR1#MA0360.1-28.68132e-050.04132310.08058058TTTGCGGAAGCTGCGGAAC+
SPI1#MA0080.2-40.0002056550.09789170.0954456TTTGCGGAAGCCGGAAG+
Eip74EF#MA0026.1-30.0006959460.331270.1859817TTTGCGGAAGCCCGGAAG+
SPIB#MA0081.1-20.001051010.5002780.1859817TTTGCGGAAGCAGAGGAA+
GCR2#MA0305.1-40.001180470.5619050.1859817TTTGCGGAAGCAGGAAGC-
HAL9#MA0311.1-40.00120220.5722450.1859815TTTGCGGAAGCCGGAA+
YER184C#MA0424.1-10.001724050.8206490.2138618TTTGCGGAAGCCTCCGGAA+
ETS1#MA0098.1-40.001843220.8773720.2138616TTTGCGGAAGCCGGAAA-
STAT1#MA0137.230.002497121.188630.25753711TTTGCGGAAGCCATTTCCCGGAAACC+
CEBPA#MA0102.200.0034071.621730.315439TTTGCGGAAGCATTGCGAAA-
YJL103C#MA0427.100.00373811.779340.3154311TTTGCGGAAGCTCTCCGGAGCT-
Stat3#MA0144.100.00443922.113060.34337410TTTGCGGAAGCTTCCAGGAAG+
GABPA#MA0062.2-30.006324113.010280.3776228TTTGCGGAAGCCCGGAAGTGGC+
HLF#MA0043.110.006515623.101430.37762211TTTGCGGAAGCTATTACGTAACC-
ELK4#MA0076.1-20.006589223.136470.3776229TTTGCGGAAGCACCGGAAGT+
ELK1#MA0028.100.007242883.447610.37762210TTTGCGGAAGCGAGCCGGAAG+
STB4#MA0391.1-20.007322943.485720.3776227TTTGCGGAAGCCTCGGAA+
CEP3#MA0282.1-20.008677244.130370.3835368TTTGCGGAAGCCTCGGAAA+
GCR1#MA0304.1-40.008677244.130370.3835367TTTGCGGAAGCTGGAAGCC+
CIN5#MA0284.1-10.009555334.548340.4031510TTTGCGGAAGCTTACGTAATC+
STP3#MA0396.1-20.00999874.759380.4035159TTTGCGGAAGCTGCGCTAGC-
Cebpa#MA0102.1-10.01074775.115890.40675710TTTGCGGAAGCTTTCGCAATCTT+
ECM22#MA0292.1-20.01132955.392830.4067577TTTGCGGAAGCTCCGGAG-
MZF1_1-4#MA0056.1-20.01208495.752430.4067576TTTGCGGAAGCTGGGGA+
SPI1#MA0080.2-40.01300536.190510.4067577TTTGCGGAAGCAGGAAGT+
SIP4#MA0380.1-20.01360836.477560.4067577TTTGCGGAAGCTCCGGAG-
PDR1#MA0352.100.01387486.604410.4067578TTTGCGGAAGCTCCGCGGA-
GABPA#MA0062.2-20.0140236.674950.4067579TTTGCGGAAGCACCGGAAGAG+
ASG1#MA0275.1-30.01491277.098450.4127816TTTGCGGAAGCCCGGAA+
STP4#MA0397.1-20.01805318.593260.4397619TTTGCGGAAGCTGCGCTATC-
LYS14#MA0325.1-30.02009859.566870.4397618TTTGCGGAAGCCCGGAATT+
PDR3#MA0353.100.02092989.962570.4397618TTTGCGGAAGCTCCGCGGA+