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MacroAPE 1083:Motif CNAGGT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;21024;0;0!02;5256;5256;5256;5256!03;21024;0;0;0!04;0;0;21024;0!05;0;0;21024;0!06;0;0;0;21024 |macroape_1083_sample_pvalues=11376-118A8;0...")
 
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2182-129A4;0.840229!12183-129A5;0.898279!12184-129A6;0.987672!10809-111A8;0.982273!10597-108E3;0.682661!10717-109I6;0.151227!10455-106G5;0.00490961!10534-107G3;0.76652!10429-106D6;0.179313!10464-106H5;0.136038!10827-111C8;0.769262!10789-110H6;0.48186!10828-111C9;0.140794!10788-110H5;0.148701!10792-110H9;0.224954!10765-110E9;0.170412!10829-111D1;0.0335487!10830-111D2;0.332963!10831-111D3;0.0441035!10832-111D4;0.185987!10833-111D5;0.0516657!10764-110E8;0.105072!10770-110F5;0.366661!10399-106A3;0.188709!10400-106A4;0.286186!10405-106A9;0.247832!10834-111D6;0.189157!10835-111D7;0.271615!10836-111D8;0.538647!10837-111D9;0.241863!10699-109G6;0.261769!10802-111A1;0.0392279!10796-110I4;0.139923!10010-101C1;0.00303403!10810-111A9;0.306356!10421-106C7;0.585115!10708-109H6;0.971525!12235-129G3;0.209492!12236-129G4;0.000570351!12237-129G5;0.00233473!10167-103B5;0.00318935!10151-102I7;0.446724!10428-106D5;0.284144!10795-110I3;0.0634665!10805-111A4;0.671451!10052-101G7;0.872082!10189-103D9;0.359923!10589-108D4;0.453468!10425-106D2;0.0835361!10427-106D4;0.174505!10702-109G9;0.79039!10432-106D9;0.293357!10496-107C1;0.00790378!10718-109I7;0.00213209!10011-101C2;0.157692!10053-101G8;0.575888!10686-109F2;0.822222!10084-102B3;0.0563169!10012-101C3;0.570778!10085-102B4;0.510784!10482-107A5;0.0877963!10419-106C5;0.0787709!10080-102A8;0.0960063!10760-110E4;0.847583!10709-109H7;0.00613497!10710-109H8;0.00416397!10703-109H1;0.0145344!10719-109I8;0.870562!10642-109A3;0.0132753!10177-103C6;0.0200333!10164-103B2;0.343827!10173-103C2;0.352812!10166-103B4;0.247824!10083-102B2;0.187862!10188-103D8;0.361556!10552-107I3;0.750666!10553-107I4;0.849965!10013-101C4;0.00212003!10536-107G5;0.651018!10618-108G6;0.0357636!10423-106C9;0.0917996!10785-110H2;0.040478!12238-129G6;0.0241926!12239-129G7;0.00187699!12240-129G8;0.00284126!10416-106C2;0.00292016!10801-110I9;0.610672!10766-110F1;0.309745!10824-111C5;0.643533!10825-111C6;0.820002!10826-111C7;0.849265!10454-106G4;0.733457!10409-106B4;0.60005!10638-108I8;0.216716!10636-108I6;0.0604019!10513-107D9;0.00769881!10420-106C6;0.0243746!10082-102B1;0.379339!10014-101C5;0.0522789!10070-101I7;0.107796!10452-106G2;0.128069!10453-106G3;0.0787988!10449-106F8;0.337344!10042-101F6;0.327749!10069-101I6;0.258625!10193-103E4;0.636257!10631-108I1;0.404439!10438-106E6;0.584978!10488-107B2;0.0135399!10196-103E7;0.788616!10071-101I8;0.0921865!10071-101I8;0.139161!10041-101F5;0.0967326!10451-106G1;0.631824!10450-106F9;0.553425!10604-108F1;0.823639!10605-108F2;0.312682!10606-108F3;0.421021!10603-108E9;0.188829!10497-107C2;0.223297!10448-106F7;0.00719174!10643-109A4;0.0638736!10426-106D3;0.00803534!10431-106D8;0.00120802!10197-103E8;0.00966691!10443-106F2;0.191783!10815-111B5;0.909946!10816-111B6;0.540048!10817-111B7;0.630206!10015-101C6;0.569564!10410-106B5;0.0265591!10054-101G9;0.50505!10758-110E2;0.617073!10711-109H9;0.372096!10040-101F4;0.270683!10470-106I2;0.435434!10415-106C1;0.00145998!10198-103E9;0.0100658!10614-108G2;0.141606!10612-108F9;0.0794838!10549-107H9;0.00641776!10615-108G3;0.711869!10487-107B1;0.134634!10433-106E1;0.778975!10688-109F4;0.99297!10444-106F3;0.00182493!10444-106F3;0.140281!10485-107A8;0.121158!10413-106B8;0.136769!10175-103C4;0.336287!10161-103A8;0.224301!12131-128D7;0.117584!10624-108H3;0.0609529!10712-109I1;0.237631!10205-103F7;0.560264!10206-103F8;0.485103!10207-103F9;0.590388!10050-101G5;0.0812994!10051-101G6;0.0106132!10016-101C7;0.825245!10046-101G1;0.784674!10778-110G4;0.423725!10633-108I3;0.0218059!10818-111B8;0.580854!10819-111B9;0.86191!10820-111C1;0.777695!10484-107A7;0.874804!10808-111A7;0.402876!10169-103B7;0.454788!10153-102I9;0.376047!13425-144D5;0.296747!13433-144E4;0.0318901!13437-144E8;0.0273744!11904-125F5;0.0239371!11905-125F6;0.252252!10039-101F3;0.0147756!10791-110H8;0.448748!10017-101C8;0.00584789!10045-101F9;0.00818805!10509-107D5;0.31264!10839-111E2;0.933832!10692-109F8;0.784116!10079-102A7;0.00810184!10078-102A6;0.917266!10721-110A1;0.772474!10569-108B2;0.214116!10570-108B3;0.165067!10571-108B4;0.742094!10647-109A8;0.31196!10752-110D5;0.075284!10782-110G8;0.495364!10726-110A6;0.00598183!10018-101C9;0.531588!10086-102B5;0.324499!10182-103D2;0.381493!10165-103B3;0.301197!10499-107C4;0.230148!10408-106B3;0.092281!10019-101D1;0.00630032!10068-101I5;0.107443!10075-102A3;0.559617!10077-102A5;0.0660003!10727-110A7;0.992574!10775-110G1;0.88053!10412-106B7;0.862854!12231-129F8;0.00276803!12232-129F9;0.0146395!12233-129G1;0.0251678!12234-129G2;0.0615754!10414-106B9;0.0311901!10170-103B8;0.119138!10183-103D3;0.418793!10150-102I6;0.398265!10174-103C3;0.288292!10155-103A2;0.570825!10038-101F2;0.38165!10838-111E1;0.512976!10759-110E3;0.0234789!10514-107E1;0.60883!10465-106H6;0.0746554!10691-109F7;0.107894!10843-111E6;0.320922!10844-111E7;0.979828!11747-123G1;0.826275!11748-123G2;0.02954!11749-123G3;0.0141541!11750-123G4;0.017174!11751-123G5;0.0968925!11840-124H4;0.496493!11752-123G6;0.309678!11753-123G7;0.200609!11754-123G8;0.00439426!11755-123G9;0.00514851!11756-123H1;0.00130767!11833-124G6;0.00496085!11760-123H5;0.0164246!11836-124G9;0.056815!11758-123H3;0.0472923!11835-124G8;0.238084!11762-123H7;0.237214!11838-124H2;0.410759!11757-123H2;0.678542!11759-123H4;0.116179!11761-123H6;0.00203149!11842-124H6;0.180332!11837-124H1;0.00954147!10568-108B1;0.0531823!13230-141I8;0.0252885!13231-141I9;0.30094!10696-109G3;0.29397!10493-107B7;0.000790145!10494-107B8;0.703561!10850-111F4;0.00880994!10851-111F5;0.413815!10852-111F6;0.500365!10853-111F7;0.144448!10854-111F8;0.615018!10855-111F9;0.322553!10856-111G1;0.000442929!10847-111F1;0.019818!10846-111E9;0.970051!10848-111F2;0.153853!10845-111E8;0.661958!10857-111G2;0.236391!10858-111G3;0.977829!10156-103A3;0.43825!11901-125F2;0.223043!11902-125F3;0.761565!11903-125F4;0.96697!10689-109F5;0.983467!10648-109A9;0.262619!10784-110H1;0.952074!10744-110C6;0.0228581!10772-110F7;0.407132!10474-106I6;0.390717!10600-108E6;0.81089!10684-109E9;0.0499187!12226-129F3;0.00136046!12227-129F4;0.000360195!10508-107D4;0.00481151!10539-107G8;0.00413868!10607-108F4;0.0013537!10555-107I6;0.00193921!10774-110F9;0.000892559!10637-108I7;0.181964!10663-109C6;0.00268671!10728-110A8;0.00509696!10729-110A9;0.00549613!10430-106D7;0.0558898!10730-110B1;0.112581!10813-111B3;0.0255132!10812-111B2;0.16601!10037-101F1;0.0622582!10172-103C1;0.471828!10163-103B1;0.332182!10076-102A4;0.222975!10073-102A1;0.446853!10036-101E9;0.0446237!10195-103E6;0.50433!10277-104E7;0.450361!10434-106E2;0.0685726!10550-107I1;0.00664602!10545-107H5;0.0486201!10544-107H4;0.00207884!10704-109H2;0.0049353!10510-107D6;0.150089!10558-107I9;0.0673823!10020-101D2;0.00348101!10732-110B3;0.6097!10049-101G4;0.116816!10698-109G5;0.00118728!10437-106E5;0.058919!10417-106C3;0.596376!10035-101E8;0.00192304!10171-103B9;0.46991!10157-103A4;0.360788!10034-101E7;0.306343!10072-101I9;0.454097!10199-103F1;0.0572572!10200-103F2;0.00303434!10697-109G4;0.417614!10723-110A3;0.0375685!10179-103C8;0.0004067!10160-103A7;0.111233!10180-103C9;0.0685552!10162-103A9;0.243541!10021-101D3;0.749706!10840-111E3;0.245085!10706-109H4;0.713969!10033-101E6;0.0401306!10032-101E5;0.508886!10490-107B4;0.509779!10439-106E7;0.0564707!10022-101D4;0.0178064!10176-103C5;0.474039!10469-106I1;0.451086!10067-101I4;0.0186108!10411-106B6;0.916574!10471-106I3;0.142156!10030-101E3;0.231996!10475-106I7;0.677408!10787-110H4;0.236058!10477-106I9;0.739061!10695-109G2;0.00140324!11771-123I7;0.0187161!11772-123I8;0.0106243!11773-123I9;0.00229509!10093-102C3;0.0167812!10442-106F1;0.00194859!10442-106F1;0.254803!10201-103F3;0.234676!10639-108I9;0.117074!11843-124H7;0.00038921!11841-124H5;0.564318!10693-109F9;0.806325!10436-106E4;0.0275386!10483-107A6;0.00242606!10282-104F3;0.00532061!10023-101D5;0.781835!10066-101I3;0.700237!10065-101I2;0.40028!10800-110I8;0.448059!10610-108F7;0.199261!10841-111E4;0.212375!10541-107H1;0.152301!10842-111E5;0.167791!10562-108A4;0.0212946!10024-101D6;0.00688797!10064-101I1;0.0183384!10609-108F6;0.0717276!10048-101G3;0.00627285!10781-110G7;0.371335!10181-103D1;0.115722!10159-103A6;0.30006!10056-101H2;0.160411!10737-110B8;0.477093!10025-101D7;0.0783593!10044-101F8;0.28608!10424-106D1;0.285107!10463-106H4;0.742826!10616-108G4;0.00175256!10486-107A9;0.00829256!10062-101H8;0.0422827!10202-103F4;0.133203!10158-103A5;0.0117512!10441-106E9;0.0982927!10031-101E4;0.0690777!10063-101H9;0.521263!10063-101H9;0.0532499!11763-123H8;0.195443!11765-123I1;0.386415!11768-123I4;0.929696!10807-111A6;0.791994!10790-110H7;0.840255!10798-110I6;0.662831!10786-110H3;0.349539!10591-108D6;0.00527278!10593-108D8;0.124212!10590-108D5;0.00899363!10026-101D8;0.139633!10096-102C6;0.787406!10168-103B6;0.143117!10154-103A1;0.287314!10209-103G2;0.162979!10061-101H7;0.0430656!10027-101D9;0.294156!10043-101F7;0.0549783!10783-110G9;0.236063!10028-101E1;0.800756!10060-101H6;0.00579374!10203-103F5;0.170579!10059-101H5;0.0257697!10047-101G2;0.113887!10029-101E2;0.00346863!10058-101H4;0.0138696!10418-106C4;0.152874!10492-107B6;0.0380383!10694-109G1;0.753847!10797-110I5;0.0118446!10057-101H3;0.203403!10100-102D1;0.223705!10055-101H1;0.488518!10204-103F6;0.777245!10191-103E2;0.75524!10563-108A5;0.698859
|name=motif_CNAGGT
|name=motif_CNAGGT
|tomtom_result=RORA_1#MA0071.1;2;0.000455669;0.216899;0.433229;6;CAAGGT;ATCAAGGTCA;+!ESR1#MA0112.2;0;0.00172459;0.820904;0.508113;6;CAAGGT;CCAGGTCACCGTGACCCC;+!T#MA0009.1;0;0.00212671;1.01232;0.508113;6;CAAGGT;CTAGGTGTGAA;+!Esrrb#MA0141.1;4;0.00213773;1.01756;0.508113;6;CAAGGT;AGCTCAAGGTCA;+!ESR1#MA0112.2;3;0.00315033;1.49956;0.524652;6;CAAGGT;GGCCCAGGTCACCCTGACCT;+!ZEB1#MA0103.1;-1;0.00331097;1.57602;0.524652;5;CAAGGT;CAGGTG;-!ESR2#MA0258.1;0;0.00620169;2.95201;0.842326;6;CAAGGT;CAAGGTCACGGTGACCTG;+!MOT3#MA0340.1;-1;0.0123569;5.88189;0.998691;5;CAAGGT;TAGGCA;+!sna#MA0086.1;-1;0.0155651;7.40898;0.998691;5;CAAGGT;CAGGTG;+!REST#MA0138.1;8;0.0173612;8.26394;0.998691;6;CAAGGT;GCGCTGTCCATGGTGCTGA;+!RORA_2#MA0072.1;5;0.0193993;9.23409;0.998691;6;CAAGGT;TATAAGTAGGTCAA;+!NR4A2#MA0160.1;-1;0.0195976;9.32844;0.998691;5;CAAGGT;AAGGTCAC;+
}}
}}

Latest revision as of 13:04, 7 September 2012

Full Name: motif_CNAGGT

Motif matrix
POACGT
0102102400
025256525652565256
0321024000
0400210240
0500210240
0600021024

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
RORA_1#MA0071.120.0004556690.2168990.4332296CAAGGTATCAAGGTCA+
ESR1#MA0112.200.001724590.8209040.5081136CAAGGTCCAGGTCACCGTGACCCC+
T#MA0009.100.002126711.012320.5081136CAAGGTCTAGGTGTGAA+
Esrrb#MA0141.140.002137731.017560.5081136CAAGGTAGCTCAAGGTCA+
ESR1#MA0112.230.003150331.499560.5246526CAAGGTGGCCCAGGTCACCCTGACCT+
ZEB1#MA0103.1-10.003310971.576020.5246525CAAGGTCAGGTG-
ESR2#MA0258.100.006201692.952010.8423266CAAGGTCAAGGTCACGGTGACCTG+
MOT3#MA0340.1-10.01235695.881890.9986915CAAGGTTAGGCA+
sna#MA0086.1-10.01556517.408980.9986915CAAGGTCAGGTG+
REST#MA0138.180.01736128.263940.9986916CAAGGTGCGCTGTCCATGGTGCTGA+
RORA_2#MA0072.150.01939939.234090.9986916CAAGGTTATAAGTAGGTCAA+
NR4A2#MA0160.1-10.01959769.328440.9986915CAAGGTAAGGTCAC+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:Motif_CNAGGT&oldid=2133869"