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MacroAPE 1083:NFATC1 motifA:Jurkat-NFATC1-ChIP-Seq/Homer: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;993;53;112;686!2;107;304;437;996!3;2;2;55;1785!4;2;2;2;1838!5;2;2;2;1838!6;2;1838;2;2!7;2;1838;2;2!8;1705;2;135;2!9;57;660;109;1018!10;149;4...")
 
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10809-111A8;0.758346!10597-108E3;0.303445!10717-109I6;0.0249367!10455-106G5;0.197391!10534-107G3;0.648823!10429-106D6;0.000455779!10464-106H5;0.246149!10827-111C8;0.033312!10789-110H6;0.238618!10828-111C9;0.441864!10788-110H5;0.177696!10792-110H9;0.0986505!10765-110E9;0.269214!10829-111D1;0.131589!10830-111D2;0.000489591!10831-111D3;0.132862!10832-111D4;0.246453!10833-111D5;0.0576937!10764-110E8;0.00983251!10770-110F5;0.183111!10399-106A3;0.223599!10400-106A4;0.0229886!10405-106A9;0.0785017!10834-111D6;0.0846944!10835-111D7;0.0264793!10836-111D8;0.976567!10837-111D9;0.000252846!10699-109G6;0.091009!10802-111A1;0.0381628!10796-110I4;3.6458e-05!10010-101C1;0.571484!10810-111A9;0.0539461!10421-106C7;0.0269579!10708-109H6;0.25242!12235-129G3;0.146743!12236-129G4;0.00271301!12237-129G5;0.89138!10167-103B5;0.0124265!10151-102I7;0.253357!10428-106D5;0.363362!10795-110I3;0.337161!10805-111A4;0.293409!10052-101G7;0.0235692!10189-103D9;0.0132849!10589-108D4;0.0148567!10425-106D2;0.000409297!10427-106D4;0.375502!10702-109G9;0.434703!10432-106D9;0.0856789!10496-107C1;0.125878!10718-109I7;0.121622!10011-101C2;0.101493!10053-101G8;0.0216439!10686-109F2;0.499881!10084-102B3;0.811442!10012-101C3;0.135648!10085-102B4;0.310271!10482-107A5;0.0362263!10419-106C5;0.106988!10080-102A8;0.00741323!10760-110E4;0.0708294!10709-109H7;0.0752808!10710-109H8;0.091825!10703-109H1;0.0456835!10719-109I8;0.0123139!10642-109A3;0.00375399!10177-103C6;0.00294807!10164-103B2;0.594227!10173-103C2;0.123805!10166-103B4;0.297054!10083-102B2;0.244514!10188-103D8;0.0945967!10552-107I3;0.83508!10553-107I4;0.0585684!10013-101C4;0.300255!10536-107G5;0.0101319!10618-108G6;0.77098!10423-106C9;0.000496188!10785-110H2;0.0229051!12238-129G6;0.000889429!12239-129G7;0.0546171!12240-129G8;0.296221!10416-106C2;0.284067!10801-110I9;0.11687!10766-110F1;0.624096!10824-111C5;0.0728472!10825-111C6;0.000864011!10826-111C7;0.000840919!10454-106G4;0.00101426!10409-106B4;0.014655!10638-108I8;0.120585!10636-108I6;0.0378663!10513-107D9;0.11257!10420-106C6;0.0949515!10082-102B1;0.0104915!10014-101C5;0.779914!10070-101I7;0.664168!10452-106G2;0.38755!10453-106G3;0.920821!10449-106F8;0.280113!10042-101F6;0.211924!10069-101I6;0.969889!10193-103E4;0.125793!10631-108I1;0.507291!10438-106E6;0.147276!10488-107B2;0.125395!10196-103E7;0.0130097!10071-101I8;0.480009!10071-101I8;0.531839!10041-101F5;0.0779969!10451-106G1;0.444123!10450-106F9;0.367765!10604-108F1;0.00388175!10605-108F2;0.00500222!10606-108F3;0.050797!10603-108E9;0.00354574!10497-107C2;4.87151e-05!10448-106F7;0.0657482!10643-109A4;0.744671!10426-106D3;0.0139521!10431-106D8;0.342569!10197-103E8;0.324438!10443-106F2;0.245578!10815-111B5;0.756676!10816-111B6;0.0109435!10817-111B7;0.0237848!10015-101C6;0.0082715!10410-106B5;0.227303!10054-101G9;0.26625!10758-110E2;0.712235!10711-109H9;0.0399986!10040-101F4;0.768284!10470-106I2;0.289557!10415-106C1;0.0111315!10198-103E9;0.173513!10614-108G2;0.212452!10612-108F9;0.098639!10549-107H9;0.0666679!10615-108G3;0.00172168!10487-107B1;0.20345!10433-106E1;0.0466883!10688-109F4;0.120607!10444-106F3;0.200171!10444-106F3;0.345559!10485-107A8;0.325928!10413-106B8;0.124823!10175-103C4;0.582257!10161-103A8;0.461055!12131-128D7;0.874034!10624-108H3;0.564575!10712-109I1;0.298246!10205-103F7;0.898481!10206-103F8;0.00058885!10207-103F9;0.299805!10050-101G5;0.000161266!10051-101G6;0.363931!10016-101C7;0.868533!10046-101G1;0.33749!10778-110G4;0.350592!10633-108I3;0.137413!10818-111B8;0.0128247!10819-111B9;0.0800837!10820-111C1;0.139589!10484-107A7;0.110616!10808-111A7;0.0590302!10169-103B7;0.0667249!10153-102I9;0.282785!13425-144D5;0.475568!13433-144E4;0.0772057!13437-144E8;0.0435662!11904-125F5;0.0344687!11905-125F6;0.0220231!10039-101F3;0.000995314!10791-110H8;0.210047!10017-101C8;0.229173!10045-101F9;0.80184!10509-107D5;0.943245!10839-111E2;0.30487!10692-109F8;0.129077!10079-102A7;0.503929!10078-102A6;0.32599!10721-110A1;0.519512!10569-108B2;0.198207!10570-108B3;0.166962!10571-108B4;0.485765!10647-109A8;0.0467341!10752-110D5;0.903299!10782-110G8;0.0180635!10726-110A6;0.327868!10018-101C9;0.955343!10086-102B5;0.362016!10182-103D2;0.441473!10165-103B3;0.535753!10499-107C4;0.713905!10408-106B3;0.0740592!10019-101D1;0.0600492!10068-101I5;0.0373387!10075-102A3;0.00526822!10077-102A5;0.226956!10727-110A7;0.421125!10775-110G1;0.454616!10412-106B7;0.914968!12231-129F8;0.688859!12232-129F9;0.011816!12233-129G1;0.00848662!12234-129G2;0.000641853!10414-106B9;0.0143952!10170-103B8;0.0670269!10183-103D3;0.128986!10150-102I6;0.179477!10174-103C3;0.306142!10155-103A2;0.969363!10038-101F2;0.995643!10838-111E1;0.69236!10759-110E3;0.0631387!10514-107E1;0.300312!10465-106H6;0.311784!10691-109F7;0.304838!10843-111E6;0.486317!10844-111E7;0.0409351!11747-123G1;0.0387153!11748-123G2;0.0116374!11749-123G3;0.00182428!11750-123G4;0.00205032!11751-123G5;1.92976e-08!11840-124H4;1.66049e-05!11752-123G6;0.000122968!11753-123G7;9.74293e-06!11754-123G8;0.000154076!11755-123G9;0.00167676!11756-123H1;0.00191839!11833-124G6;0.0110215!11760-123H5;6.92557e-06!11836-124G9;0.00591887!11758-123H3;0.00706027!11835-124G8;0.0673668!11762-123H7;0.0106269!11838-124H2;0.0114813!11757-123H2;0.294744!11759-123H4;0.0741766!11761-123H6;0.000137767!11842-124H6;0.0204199!11837-124H1;4.62151e-06!10568-108B1;0.0826092!13230-141I8;0.595175!13231-141I9;0.0211032!10696-109G3;0.030111!10493-107B7;0.281904!10494-107B8;0.00378567!10850-111F4;0.0676552!10851-111F5;0.0350526!10852-111F6;0.23298!10853-111F7;0.545673!10854-111F8;0.0523371!10855-111F9;0.090938!10856-111G1;0.0238688!10847-111F1;0.204608!10846-111E9;0.197405!10848-111F2;0.0702817!10845-111E8;0.583521!10857-111G2;0.000745525!10858-111G3;0.000560357!10156-103A3;0.00938214!11901-125F2;0.397525!11902-125F3;0.267501!11903-125F4;0.327022!10689-109F5;0.217735!10648-109A9;0.484499!10784-110H1;0.473584!10744-110C6;0.00245702!10772-110F7;0.479359!10474-106I6;0.0101181!10600-108E6;0.612557!10684-109E9;0.398123!12226-129F3;0.0120224!12227-129F4;0.366396!10508-107D4;0.907958!10539-107G8;0.0443187!10607-108F4;0.0771518!10555-107I6;0.00825406!10774-110F9;0.179995!10637-108I7;0.0638686!10663-109C6;0.190916!10728-110A8;0.00118495!10729-110A9;0.00495033!10430-106D7;0.163357!10730-110B1;0.158606!10813-111B3;0.0146948!10812-111B2;0.00960153!10037-101F1;0.293565!10172-103C1;0.256631!10163-103B1;0.159851!10076-102A4;0.414641!10073-102A1;0.230403!10036-101E9;0.10827!10195-103E6;0.115202!10277-104E7;0.217145!10434-106E2;0.954507!10550-107I1;0.45948!10545-107H5;0.0352471!10544-107H4;0.694393!10704-109H2;0.887669!10510-107D6;0.112301!10558-107I9;0.436141!10020-101D2;0.38263!10732-110B3;0.000735454!10049-101G4;0.993581!10698-109G5;0.915842!10437-106E5;0.00485297!10417-106C3;0.114148!10035-101E8;0.573861!10171-103B9;0.218917!10157-103A4;0.260417!10034-101E7;0.334819!10072-101I9;0.251282!10199-103F1;0.0756025!10200-103F2;0.118016!10697-109G4;0.346301!10723-110A3;0.0446083!10179-103C8;0.673912!10160-103A7;0.30908!10180-103C9;0.238839!10162-103A9;0.207208!10021-101D3;0.885352!10840-111E3;0.433919!10706-109H4;0.89594!10033-101E6;0.271228!10032-101E5;0.304401!10490-107B4;0.143282!10439-106E7;0.0173701!10022-101D4;0.234571!10176-103C5;0.0292181!10469-106I1;0.141869!10067-101I4;0.287302!10411-106B6;0.664593!10471-106I3;0.0211167!10030-101E3;0.0548311!10475-106I7;0.872764!10787-110H4;0.0147039!10477-106I9;0.166111!10695-109G2;0.095041!11771-123I7;0.0204487!11772-123I8;0.283167!11773-123I9;0.136684!10093-102C3;0.246926!10442-106F1;0.251066!10442-106F1;0.0757728!10201-103F3;0.0771557!10639-108I9;0.430846!11843-124H7;0.30838!11841-124H5;0.630127!10693-109F9;0.415499!10436-106E4;0.52554!10483-107A6;0.0203107!10282-104F3;0.103152!10023-101D5;0.687784!10066-101I3;0.400116!10065-101I2;0.831669!10800-110I8;0.0272454!10610-108F7;0.0284686!10841-111E4;0.00266935!10541-107H1;0.499908!10842-111E5;0.0419426!10562-108A4;0.0247024!10024-101D6;0.000701767!10064-101I1;0.962532!10609-108F6;0.855498!10048-101G3;0.0182559!10781-110G7;0.0293081!10181-103D1;0.068918!10159-103A6;0.963833!10056-101H2;0.77741!10737-110B8;0.73457!10025-101D7;0.135716!10044-101F8;0.604893!10424-106D1;0.55781!10463-106H4;0.606943!10616-108G4;0.261604!10486-107A9;0.444856!10062-101H8;0.192044!10202-103F4;0.778099!10158-103A5;0.195014!10441-106E9;0.407529!10031-101E4;0.0574477!10063-101H9;0.164595!10063-101H9;0.0566242!11763-123H8;0.629138!11765-123I1;0.00292491!11768-123I4;0.000481573!10807-111A6;0.00321533!10790-110H7;0.112882!10798-110I6;0.00262368!10786-110H3;0.395377!10591-108D6;0.0607257!10593-108D8;0.0157427!10590-108D5;0.233726!10026-101D8;0.00204826!10096-102C6;0.293165!10168-103B6;0.24416!10154-103A1;0.637308!10209-103G2;0.933996!10061-101H7;0.211961!10027-101D9;0.0891489!10043-101F7;0.96868!10783-110G9;0.668125!10028-101E1;0.444029!10060-101H6;0.0688003!10203-103F5;0.048987!10059-101H5;0.179891!10047-101G2;0.228911!10029-101E2;0.121167!10058-101H4;0.0457406!10418-106C4;0.0140319!10492-107B6;0.58098!10694-109G1;0.659146!10797-110I5;0.295149!10057-101H3;0.00319409!10100-102D1;0.433249!10055-101H1;0.00289587!10204-103F6;0.0230731!10191-103E2;0.038006!10563-108A5;0.0314297
|name=NFATC1_motifA:Jurkat-NFATC1-ChIP-Seq/Homer
|name=NFATC1_motifA:Jurkat-NFATC1-ChIP-Seq/Homer
|tomtom_result=NFATC2#MA0152.1;-1;3.19696e-06;0.00152175;0.00303309;7;ATTTTCCATT;TTTTCCA;+!HSF1#MA0319.1;-1;0.000639393;0.304351;0.210887;8;ATTTTCCATT;TGTTCCAT;-!STB3#MA0390.1;7;0.000666841;0.317417;0.210887;10;ATTTTCCATT;GTCCAAAATTTTTCACTCTGG;+!HMG-I/Y#MA0045.1;1;0.00109446;0.520962;0.25747;10;ATTTTCCATT;GTTTTTCCATTTGTTG;-!SFP1#MA0378.1;10;0.0013569;0.645883;0.25747;10;ATTTTCCATT;ATTGAAAAAAATTTTCTACGG;+!squamosa#MA0082.1;-1;0.00192723;0.917361;0.304741;9;ATTTTCCATT;ATTTCCATTTTTGG;-!EDS1#MA0294.1;1;0.0029997;1.42786;0.406564;8;ATTTTCCATT;ATTTTTCCG;-!dl_1#MA0022.1;4;0.00426634;2.03078;0.505958;8;ATTTTCCATT;GGGGTTTTTCCC;+!YKL222C#MA0428.1;-1;0.00759424;3.61486;0.798408;9;ATTTTCCATT;ATTTCCGTT;-!znf143#MA0088.1;1;0.00858174;4.08491;0.798408;10;ATTTTCCATT;GATTTCCCATAATGCCTTGC;+!YRM1#MA0438.1;-1;0.00989824;4.71156;0.798408;8;ATTTTCCATT;ATTTCCGT;-!SFL1#MA0377.1;6;0.010227;4.86807;0.798408;10;ATTTTCCATT;TTTTATTTCTTCTATTCTCTA;-!ETS1#MA0098.1;-2;0.0122501;5.83105;0.798408;6;ATTTTCCATT;CTTCCG;+!STAT1#MA0137.1;7;0.0124598;5.93088;0.798408;7;ATTTTCCATT;CAGTTTCATTTTCC;-!id1#MA0120.1;-1;0.0126231;6.00862;0.798408;9;ATTTTCCATT;TTTTCCTTTTCG;+!RGT1#MA0367.1;2;0.0148966;7.0908;0.849439;9;ATTTTCCATT;AATTTTTCCGG;+!ELF5#MA0136.1;0;0.0152206;7.24501;0.849439;9;ATTTTCCATT;TACTTCCTT;+!RELA#MA0107.1;3;0.0198645;9.45548;0.991909;7;ATTTTCCATT;GGGAATTTCC;+
}}
}}

Latest revision as of 12:35, 7 September 2012

Full Name: NFATC1_motifA:Jurkat-NFATC1-ChIP-Seq/Homer

Motif matrix
POACGT
199353112686
2107304437996
322551785
42221838
52221838
62183822
72183822
8170521352
9576601091018
10149468256971

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
NFATC2#MA0152.1-13.19696e-060.001521750.003033097ATTTTCCATTTTTTCCA+
HSF1#MA0319.1-10.0006393930.3043510.2108878ATTTTCCATTTGTTCCAT-
STB3#MA0390.170.0006668410.3174170.21088710ATTTTCCATTGTCCAAAATTTTTCACTCTGG+
HMG-I/Y#MA0045.110.001094460.5209620.2574710ATTTTCCATTGTTTTTCCATTTGTTG-
SFP1#MA0378.1100.00135690.6458830.2574710ATTTTCCATTATTGAAAAAAATTTTCTACGG+
squamosa#MA0082.1-10.001927230.9173610.3047419ATTTTCCATTATTTCCATTTTTGG-
EDS1#MA0294.110.00299971.427860.4065648ATTTTCCATTATTTTTCCG-
dl_1#MA0022.140.004266342.030780.5059588ATTTTCCATTGGGGTTTTTCCC+
YKL222C#MA0428.1-10.007594243.614860.7984089ATTTTCCATTATTTCCGTT-
znf143#MA0088.110.008581744.084910.79840810ATTTTCCATTGATTTCCCATAATGCCTTGC+
YRM1#MA0438.1-10.009898244.711560.7984088ATTTTCCATTATTTCCGT-
SFL1#MA0377.160.0102274.868070.79840810ATTTTCCATTTTTTATTTCTTCTATTCTCTA-
ETS1#MA0098.1-20.01225015.831050.7984086ATTTTCCATTCTTCCG+
STAT1#MA0137.170.01245985.930880.7984087ATTTTCCATTCAGTTTCATTTTCC-
id1#MA0120.1-10.01262316.008620.7984089ATTTTCCATTTTTTCCTTTTCG+
RGT1#MA0367.120.01489667.09080.8494399ATTTTCCATTAATTTTTCCGG+
ELF5#MA0136.100.01522067.245010.8494399ATTTTCCATTTACTTCCTT+
RELA#MA0107.130.01986459.455480.9919097ATTTTCCATTGGGAATTTCC+
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