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MacroAPE 1083:RFX1 NPC-Rfx1-ChIP-Seq/Homer: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;529;685;1510;1081!2;88;15;3698;4!3;19;323;84;3379!4;183;727;95;2800!5;407;285;2550;563!6;4;3538;23;240!7;4;3397;4;400!8;3147;266;118;274!9;3...")
 
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A6;0.221478!10809-111A8;0.0191169!10597-108E3;0.000963216!10717-109I6;0.847315!10455-106G5;0.401159!10534-107G3;0.763595!10429-106D6;0.473873!10464-106H5;0.841096!10827-111C8;0.41136!10789-110H6;0.335992!10828-111C9;0.183246!10788-110H5;0.0207235!10792-110H9;0.238521!10765-110E9;0.289548!10829-111D1;0.120583!10830-111D2;0.31245!10831-111D3;0.949341!10832-111D4;0.0141625!10833-111D5;0.616195!10764-110E8;0.373457!10770-110F5;0.0183485!10399-106A3;0.541143!10400-106A4;0.624897!10405-106A9;0.503564!10834-111D6;0.110989!10835-111D7;0.518558!10836-111D8;0.951237!10837-111D9;0.42578!10699-109G6;0.418508!10802-111A1;0.258365!10796-110I4;0.209513!10010-101C1;0.52209!10810-111A9;0.00067182!10421-106C7;2.67469e-05!10708-109H6;0.119323!12235-129G3;0.00284586!12236-129G4;0.576131!12237-129G5;0.391066!10167-103B5;0.717348!10151-102I7;0.0228512!10428-106D5;0.169977!10795-110I3;0.722757!10805-111A4;0.280068!10052-101G7;0.000646931!10189-103D9;0.396143!10589-108D4;0.00328356!10425-106D2;0.000451723!10427-106D4;0.705355!10702-109G9;0.537081!10432-106D9;0.49986!10496-107C1;0.578616!10718-109I7;0.085586!10011-101C2;0.754305!10053-101G8;0.0157616!10686-109F2;2.08823e-07!10084-102B3;0.810848!10012-101C3;0.240768!10085-102B4;0.215317!10482-107A5;0.0524465!10419-106C5;0.856681!10080-102A8;0.228659!10760-110E4;0.00453999!10709-109H7;0.405652!10710-109H8;0.0383882!10703-109H1;0.145917!10719-109I8;0.00386534!10642-109A3;0.00335342!10177-103C6;0.0130135!10164-103B2;0.00291847!10173-103C2;0.00515681!10166-103B4;0.217868!10083-102B2;0.567713!10188-103D8;0.3948!10552-107I3;0.0687635!10553-107I4;0.15726!10013-101C4;0.951004!10536-107G5;0.597886!10618-108G6;0.00296974!10423-106C9;0.651649!10785-110H2;0.497442!12238-129G6;0.0496581!12239-129G7;0.00156341!12240-129G8;0.283347!10416-106C2;0.000488602!10801-110I9;0.360056!10766-110F1;0.0745085!10824-111C5;0.0891372!10825-111C6;0.95507!10826-111C7;0.811459!10454-106G4;0.887734!10409-106B4;0.508344!10638-108I8;0.205858!10636-108I6;0.0294072!10513-107D9;8.39246e-05!10420-106C6;0.542663!10082-102B1;0.0825445!10014-101C5;0.00539762!10070-101I7;0.00627878!10452-106G2;0.0331892!10453-106G3;0.924125!10449-106F8;0.667778!10042-101F6;0.906387!10069-101I6;0.199942!10193-103E4;0.441887!10631-108I1;0.0374443!10438-106E6;0.795158!10488-107B2;0.0199619!10196-103E7;0.030124!10071-101I8;0.154305!10071-101I8;0.27618!10041-101F5;0.0346381!10451-106G1;0.0981514!10450-106F9;0.00322231!10604-108F1;0.00680318!10605-108F2;0.272044!10606-108F3;0.0815818!10603-108E9;0.452308!10497-107C2;0.390277!10448-106F7;0.00259604!10643-109A4;0.00329054!10426-106D3;0.0581292!10431-106D8;0.277633!10197-103E8;0.389854!10443-106F2;0.0656086!10815-111B5;0.109424!10816-111B6;0.1005!10817-111B7;0.177332!10015-101C6;0.131406!10410-106B5;0.001759!10054-101G9;0.0348648!10758-110E2;0.870953!10711-109H9;0.317952!10040-101F4;0.252853!10470-106I2;0.0886005!10415-106C1;0.0488028!10198-103E9;0.353899!10614-108G2;0.171327!10612-108F9;0.0573136!10549-107H9;0.0417694!10615-108G3;0.123938!10487-107B1;0.00432493!10433-106E1;0.502593!10688-109F4;0.117565!10444-106F3;0.767894!10444-106F3;8.8634e-05!10485-107A8;4.20109e-05!10413-106B8;0.228389!10175-103C4;0.0110074!10161-103A8;0.404291!12131-128D7;0.769722!10624-108H3;0.882164!10712-109I1;0.00362684!10205-103F7;0.0803362!10206-103F8;0.170452!10207-103F9;0.0567172!10050-101G5;2.92008e-06!10051-101G6;0.00834621!10016-101C7;0.0545225!10046-101G1;0.00354373!10778-110G4;0.0890564!10633-108I3;0.981898!10818-111B8;0.177396!10819-111B9;0.0699145!10820-111C1;0.0787789!10484-107A7;0.0718536!10808-111A7;0.000402351!10169-103B7;0.193088!10153-102I9;0.0285608!13425-144D5;0.187283!13433-144E4;0.0661703!13437-144E8;0.138404!11904-125F5;0.269095!11905-125F6;0.0107871!10039-101F3;0.0123187!10791-110H8;0.101232!10017-101C8;0.694561!10045-101F9;0.442391!10509-107D5;0.965556!10839-111E2;0.831579!10692-109F8;0.000125378!10079-102A7;0.559471!10078-102A6;0.0259234!10721-110A1;0.0196309!10569-108B2;0.000169885!10570-108B3;0.0196456!10571-108B4;0.0162099!10647-109A8;0.00325476!10752-110D5;0.00433283!10782-110G8;0.347679!10726-110A6;0.00886845!10018-101C9;0.03393!10086-102B5;2.65675e-06!10182-103D2;2.78059e-06!10165-103B3;0.27692!10499-107C4;0.245772!10408-106B3;0.00100678!10019-101D1;0.0820476!10068-101I5;0.410816!10075-102A3;0.00668973!10077-102A5;0.826625!10727-110A7;9.36163e-08!10775-110G1;0.812088!10412-106B7;0.233995!12231-129F8;0.377699!12232-129F9;0.178874!12233-129G1;0.134896!12234-129G2;0.147558!10414-106B9;0.495403!10170-103B8;0.0173488!10183-103D3;0.0296786!10150-102I6;0.0921469!10174-103C3;0.360822!10155-103A2;0.000829087!10038-101F2;0.0718286!10838-111E1;0.437242!10759-110E3;0.271782!10514-107E1;0.792114!10465-106H6;0.721306!10691-109F7;0.0809021!10843-111E6;0.226983!10844-111E7;0.0351365!11747-123G1;0.0424484!11748-123G2;0.00152625!11749-123G3;0.0542864!11750-123G4;3.49015e-05!11751-123G5;0.00014967!11840-124H4;0.0134686!11752-123G6;0.0154262!11753-123G7;0.000426084!11754-123G8;0.0295304!11755-123G9;0.0017363!11756-123H1;0.023516!11833-124G6;0.065062!11760-123H5;0.000195097!11836-124G9;0.000180119!11758-123H3;8.81595e-05!11835-124G8;0.0211827!11762-123H7;0.0689567!11838-124H2;0.00494651!11757-123H2;0.180377!11759-123H4;0.000727136!11761-123H6;0.043753!11842-124H6;0.000678707!11837-124H1;0.182992!10568-108B1;0.49162!13230-141I8;0.363485!13231-141I9;0.234931!10696-109G3;0.276082!10493-107B7;0.241377!10494-107B8;0.0989639!10850-111F4;0.809432!10851-111F5;0.280501!10852-111F6;2.54736e-05!10853-111F7;0.0144493!10854-111F8;0.599259!10855-111F9;4.0757e-05!10856-111G1;0.420455!10847-111F1;0.0133169!10846-111E9;0.713759!10848-111F2;0.756205!10845-111E8;0.0490486!10857-111G2;0.150255!10858-111G3;0.137774!10156-103A3;0.282104!11901-125F2;0.346194!11902-125F3;0.0117047!11903-125F4;0.0105174!10689-109F5;0.0189689!10648-109A9;0.083045!10784-110H1;0.0239407!10744-110C6;0.0802133!10772-110F7;0.0365374!10474-106I6;0.971755!10600-108E6;0.0927713!10684-109E9;0.561811!12226-129F3;0.103299!12227-129F4;0.0565772!10508-107D4;0.00632526!10539-107G8;0.157017!10607-108F4;0.510561!10555-107I6;1.04948e-05!10774-110F9;0.127911!10637-108I7;6.64741e-05!10663-109C6;0.00562377!10728-110A8;0.00215356!10729-110A9;0.328286!10430-106D7;0.822973!10730-110B1;0.175631!10813-111B3;9.82422e-05!10812-111B2;0.0154357!10037-101F1;0.361748!10172-103C1;0.0463927!10163-103B1;0.0738169!10076-102A4;0.659226!10073-102A1;0.143286!10036-101E9;0.0455613!10195-103E6;0.200935!10277-104E7;0.0890966!10434-106E2;0.870106!10550-107I1;0.197015!10545-107H5;0.987615!10544-107H4;0.183483!10704-109H2;0.618014!10510-107D6;0.000312796!10558-107I9;0.444801!10020-101D2;0.0989079!10732-110B3;0.132381!10049-101G4;0.00825509!10698-109G5;0.84233!10437-106E5;0.11424!10417-106C3;0.256427!10035-101E8;0.909044!10171-103B9;0.203376!10157-103A4;0.113416!10034-101E7;0.355136!10072-101I9;0.226527!10199-103F1;0.0193643!10200-103F2;0.108969!10697-109G4;0.378365!10723-110A3;2.6453e-05!10179-103C8;0.0271807!10160-103A7;0.370184!10180-103C9;0.0911658!10162-103A9;2.47632e-16!10021-101D3;6.54105e-09!10840-111E3;2.67072e-05!10706-109H4;0.366539!10033-101E6;0.114866!10032-101E5;0.267784!10490-107B4;0.20843!10439-106E7;0.827531!10022-101D4;0.927696!10176-103C5;0.275925!10469-106I1;0.0177989!10067-101I4;0.525623!10411-106B6;0.373337!10471-106I3;0.0196256!10030-101E3;0.125483!10475-106I7;0.464209!10787-110H4;0.00205731!10477-106I9;2.65589e-05!10695-109G2;0.909181!11771-123I7;0.918096!11772-123I8;0.746478!11773-123I9;0.682917!10093-102C3;0.0904819!10442-106F1;0.448002!10442-106F1;0.0717413!10201-103F3;0.0408735!10639-108I9;0.8146!11843-124H7;0.24149!11841-124H5;2.40886e-05!10693-109F9;1.24358e-05!10436-106E4;0.00357857!10483-107A6;0.79091!10282-104F3;0.606766!10023-101D5;0.0023276!10066-101I3;0.00214111!10065-101I2;0.615216!10800-110I8;0.400794!10610-108F7;0.0615212!10841-111E4;0.0158619!10541-107H1;2.27469e-06!10842-111E5;0.739628!10562-108A4;0.276589!10024-101D6;0.166735!10064-101I1;0.000346285!10609-108F6;0.140783!10048-101G3;0.0026484!10781-110G7;0.196121!10181-103D1;0.469022!10159-103A6;0.901581!10056-101H2;0.78534!10737-110B8;0.131737!10025-101D7;0.937287!10044-101F8;1.37326e-07!10424-106D1;9.8627e-08!10463-106H4;0.906378!10616-108G4;0.825154!10486-107A9;0.928053!10062-101H8;0.0113525!10202-103F4;0.123043!10158-103A5;0.0399536!10441-106E9;0.485827!10031-101E4;0.0136354!10063-101H9;0.155328!10063-101H9;0.0152111!11763-123H8;0.454552!11765-123I1;0.759738!11768-123I4;0.605219!10807-111A6;0.57252!10790-110H7;0.920747!10798-110I6;0.938295!10786-110H3;0.0427102!10591-108D6;0.0994228!10593-108D8;0.998501!10590-108D5;0.219127!10026-101D8;0.736715!10096-102C6;2.4398e-12!10168-103B6;3.9106e-21!10154-103A1;0.278932!10209-103G2;0.488155!10061-101H7;0.847442!10027-101D9;0.294767!10043-101F7;0.0406045!10783-110G9;0.011838!10028-101E1;0.56279!10060-101H6;0.916052!10203-103F5;0.402263!10059-101H5;0.0733!10047-101G2;0.220321!10029-101E2;0.000443665!10058-101H4;0.0209682!10418-106C4;0.533753!10492-107B6;0.780624!10694-109G1;0.114661!10797-110I5;0.984742!10057-101H3;0.130129!10100-102D1;0.619706!10055-101H1;0.465372!10204-103F6;0.487291!10191-103E2;0.00328862!10563-108A5;0.0106666
|name=RFX1_NPC-Rfx1-ChIP-Seq/Homer
|name=RFX1_NPC-Rfx1-ChIP-Seq/Homer
|tomtom_result=RFX1#MA0365.1;0;0.000182017;0.0866403;0.173281;8;GGTTGCCATGGCAA;GGTTGCTA;+!YY1#MA0095.1;-4;0.00980139;4.66546;1;6;GGTTGCCATGGCAA;GCCATC;+!ESR1#MA0112.2;6;0.010577;5.03465;1;14;GGTTGCCATGGCAA;AGGTCAGGGTGACCTGGGCC;-!RIM101#MA0368.1;-3;0.0106065;5.0487;1;7;GGTTGCCATGGCAA;CGCCAAG;+!ESR1#MA0112.2;3;0.011095;5.28121;1;14;GGTTGCCATGGCAA;CCAGGTCACCGTGACCCC;+!Sox2#MA0143.1;1;0.0135394;6.44477;1;14;GGTTGCCATGGCAA;CCTTTGTTATGCAAA;+!Pou5f1#MA0142.1;0;0.0149018;7.09324;1;14;GGTTGCCATGGCAA;CTTTGTTATGCAAAT;+
}}
}}

Latest revision as of 12:33, 7 September 2012

Full Name: RFX1_NPC-Rfx1-ChIP-Seq/Homer

Motif matrix
POACGT
152968515101081
2881536984
319323843379
4183727952800
54072852550563
64353823240
7433974400
83147266118274
93081373043056
10354434434
112512735198
126202280361544
13255795978175
14321117937342

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
RFX1#MA0365.100.0001820170.08664030.1732818GGTTGCCATGGCAAGGTTGCTA+
YY1#MA0095.1-40.009801394.6654616GGTTGCCATGGCAAGCCATC+
ESR1#MA0112.260.0105775.03465114GGTTGCCATGGCAAAGGTCAGGGTGACCTGGGCC-
RIM101#MA0368.1-30.01060655.048717GGTTGCCATGGCAACGCCAAG+
ESR1#MA0112.230.0110955.28121114GGTTGCCATGGCAACCAGGTCACCGTGACCCC+
Sox2#MA0143.110.01353946.44477114GGTTGCCATGGCAACCTTTGTTATGCAAA+
Pou5f1#MA0142.100.01490187.09324114GGTTGCCATGGCAACTTTGTTATGCAAAT+
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