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MacroAPE 1083:10-GGGAAGTGACG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;35.055;15.96;203.205;30.78!2;19.38;18.525;227.145;19.95!3;21.66;5.985;251.085;6.27!4;230.28;21.375;16.815;16.53!5;247.095;18.24;8.55;11.115!...")
 
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284326!12181-129A3;0.0338289!12176-128I7;0.0719487!12177-128I8;0.0591727!12182-129A4;0.0293845!12183-129A5;0.0313524!12184-129A6;0.0285483!10809-111A8;0.0743085!10597-108E3;0.320518!10717-109I6;0.848033!10455-106G5;0.687785!10534-107G3;0.0289398!10429-106D6;0.321402!10464-106H5;0.63762!10827-111C8;0.409456!10789-110H6;0.207316!10828-111C9;0.0327586!10788-110H5;0.0916973!10792-110H9;0.216494!10765-110E9;0.0101001!10829-111D1;0.0985394!10830-111D2;0.0772369!10831-111D3;0.177721!10832-111D4;0.130354!10833-111D5;0.0333882!10764-110E8;0.0455314!10770-110F5;0.164678!10399-106A3;0.137598!10400-106A4;0.0461217!10405-106A9;0.0672598!10834-111D6;0.0326162!10835-111D7;0.13365!10836-111D8;0.329612!10837-111D9;0.45305!10699-109G6;0.40302!10802-111A1;0.429893!10796-110I4;0.261544!10010-101C1;0.465771!10810-111A9;0.220088!10421-106C7;0.950685!10708-109H6;0.0640517!12235-129G3;0.572784!12236-129G4;0.508589!12237-129G5;0.293631!10167-103B5;0.770296!10151-102I7;0.00655474!10428-106D5;0.000728165!10795-110I3;0.968314!10805-111A4;0.0946007!10052-101G7;0.294387!10189-103D9;0.0393813!10589-108D4;0.40533!10425-106D2;0.653703!10427-106D4;0.955073!10702-109G9;0.00692006!10432-106D9;0.748369!10496-107C1;0.0713586!10718-109I7;0.181401!10011-101C2;0.0658636!10053-101G8;0.0424493!10686-109F2;0.0279399!10084-102B3;0.717639!10012-101C3;0.000740154!10085-102B4;0.00197563!10482-107A5;0.00159121!10419-106C5;0.854772!10080-102A8;0.445361!10760-110E4;0.172549!10709-109H7;0.918719!10710-109H8;0.976302!10703-109H1;0.711461!10719-109I8;0.244498!10642-109A3;0.478414!10177-103C6;0.0663111!10164-103B2;0.00187929!10173-103C2;6.53914e-05!10166-103B4;0.000852679!10083-102B2;0.000272741!10188-103D8;0.000179078!10552-107I3;0.00189872!10553-107I4;0.245176!10013-101C4;0.486713!10536-107G5;0.0197574!10618-108G6;0.249353!10423-106C9;0.743786!10785-110H2;0.757525!12238-129G6;0.941542!12239-129G7;0.0919301!12240-129G8;0.161497!10416-106C2;0.0271574!10801-110I9;0.333751!10766-110F1;0.0949403!10824-111C5;0.230508!10825-111C6;0.257181!10826-111C7;0.241784!10454-106G4;0.146628!10409-106B4;0.368219!10638-108I8;0.380366!10636-108I6;0.212009!10513-107D9;0.0457888!10420-106C6;0.471134!10082-102B1;0.796494!10014-101C5;0.0302215!10070-101I7;0.0795416!10452-106G2;0.068956!10453-106G3;0.0954026!10449-106F8;0.132922!10042-101F6;0.173571!10069-101I6;0.00373734!10193-103E4;0.0124688!10631-108I1;0.000878957!10438-106E6;0.0811519!10488-107B2;0.44992!10196-103E7;0.142744!10071-101I8;0.0281952!10071-101I8;0.0533326!10041-101F5;0.000611377!10451-106G1;0.0943186!10450-106F9;0.0629006!10604-108F1;0.628352!10605-108F2;0.769163!10606-108F3;0.402673!10603-108E9;0.731021!10497-107C2;0.506881!10448-106F7;0.0188046!10643-109A4;0.927248!10426-106D3;0.221851!10431-106D8;0.219341!10197-103E8;0.231721!10443-106F2;0.0503302!10815-111B5;0.339112!10816-111B6;0.574747!10817-111B7;0.611202!10015-101C6;0.616711!10410-106B5;0.0125657!10054-101G9;0.819233!10758-110E2;0.0127008!10711-109H9;0.288126!10040-101F4;0.201171!10470-106I2;0.000404685!10415-106C1;0.391553!10198-103E9;0.219785!10614-108G2;0.0958868!10612-108F9;0.711048!10549-107H9;0.484498!10615-108G3;0.484287!10487-107B1;0.507632!10433-106E1;0.00894095!10688-109F4;0.393251!10444-106F3;0.466592!10444-106F3;0.336021!10485-107A8;0.306944!10413-106B8;0.417689!10175-103C4;0.532772!10161-103A8;0.00348768!12131-128D7;0.00231912!10624-108H3;0.204482!10712-109I1;0.217803!10205-103F7;0.0107635!10206-103F8;0.0287849!10207-103F9;0.0018369!10050-101G5;0.457364!10051-101G6;0.00920238!10016-101C7;0.00513043!10046-101G1;0.00362162!10778-110G4;0.00662949!10633-108I3;0.550926!10818-111B8;0.832685!10819-111B9;0.779913!10820-111C1;0.780249!10484-107A7;0.770525!10808-111A7;0.457636!10169-103B7;0.0427388!10153-102I9;0.00568932!13425-144D5;0.000549549!13433-144E4;0.0319592!13437-144E8;0.0287676!11904-125F5;0.0679044!11905-125F6;0.0209185!10039-101F3;0.0126144!10791-110H8;0.000570244!10017-101C8;0.789774!10045-101F9;0.194563!10509-107D5;0.0186879!10839-111E2;0.29275!10692-109F8;0.144057!10079-102A7;0.708559!10078-102A6;0.013552!10721-110A1;0.0109494!10569-108B2;0.660594!10570-108B3;0.23937!10571-108B4;0.141399!10647-109A8;0.0536342!10752-110D5;0.712203!10782-110G8;0.301606!10726-110A6;0.225233!10018-101C9;0.375422!10086-102B5;0.979503!10182-103D2;0.122314!10165-103B3;0.00484!10499-107C4;0.00223627!10408-106B3;0.629473!10019-101D1;0.839068!10068-101I5;0.450577!10075-102A3;0.133529!10077-102A5;0.519636!10727-110A7;0.166196!10775-110G1;0.0072913!10412-106B7;0.0593487!12231-129F8;0.356739!12232-129F9;0.803347!12233-129G1;0.800644!12234-129G2;0.753229!10414-106B9;0.745519!10170-103B8;0.36724!10183-103D3;0.00699618!10150-102I6;0.00179205!10174-103C3;0.000628853!10155-103A2;0.0150896!10038-101F2;0.00704578!10838-111E1;0.00857173!10759-110E3;0.0180916!10514-107E1;0.876416!10465-106H6;0.339854!10691-109F7;0.897106!10843-111E6;0.218785!10844-111E7;0.244192!11747-123G1;0.168343!11748-123G2;0.430795!11749-123G3;0.420832!11750-123G4;0.69636!11751-123G5;0.632018!11840-124H4;0.448267!11752-123G6;0.701383!11753-123G7;0.343348!11754-123G8;0.658336!11755-123G9;0.384037!11756-123H1;0.974858!11833-124G6;0.871084!11760-123H5;0.599601!11836-124G9;0.966377!11758-123H3;0.68203!11835-124G8;0.913534!11762-123H7;0.491755!11838-124H2;0.633105!11757-123H2;0.645817!11759-123H4;0.851796!11761-123H6;0.759957!11842-124H6;0.595295!11837-124H1;0.437668!10568-108B1;0.596254!13230-141I8;0.365012!13231-141I9;0.115915!10696-109G3;0.122442!10493-107B7;0.930803!10494-107B8;0.279848!10850-111F4;0.898407!10851-111F5;0.440733!10852-111F6;0.198809!10853-111F7;0.611738!10854-111F8;0.997246!10855-111F9;0.0625591!10856-111G1;0.0505334!10847-111F1;0.0857016!10846-111E9;0.182526!10848-111F2;0.34546!10845-111E8;0.271188!10857-111G2;0.874592!10858-111G3;0.670813!10156-103A3;0.254933!11901-125F2;0.000387826!11902-125F3;0.099369!11903-125F4;0.101896!10689-109F5;0.065482!10648-109A9;0.59448!10784-110H1;0.741541!10744-110C6;0.102756!10772-110F7;0.10863!10474-106I6;0.0788802!10600-108E6;0.00315276!10684-109E9;0.600789!12226-129F3;0.530492!12227-129F4;0.0473793!10508-107D4;0.190408!10539-107G8;0.0970616!10607-108F4;0.138684!10555-107I6;0.563419!10774-110F9;0.0297513!10637-108I7;0.407432!10663-109C6;0.464084!10728-110A8;0.909179!10729-110A9;0.691164!10430-106D7;0.216069!10730-110B1;0.670968!10813-111B3;0.504804!10812-111B2;0.186856!10037-101F1;0.159461!10172-103C1;0.000347562!10163-103B1;0.00494537!10076-102A4;0.000513477!10073-102A1;0.000967659!10036-101E9;0.000405583!10195-103E6;0.000444352!10277-104E7;0.000463563!10434-106E2;0.0141641!10550-107I1;0.106299!10545-107H5;0.407751!10544-107H4;0.279893!10704-109H2;0.793463!10510-107D6;0.78179!10558-107I9;0.730244!10020-101D2;0.0569924!10732-110B3;0.0514945!10049-101G4;0.731833!10698-109G5;0.217441!10437-106E5;0.294764!10417-106C3;0.436381!10035-101E8;0.0161922!10171-103B9;0.00042934!10157-103A4;0.00284801!10034-101E7;0.00111961!10072-101I9;0.000724874!10199-103F1;0.000204639!10200-103F2;0.17064!10697-109G4;0.0202311!10723-110A3;0.730434!10179-103C8;0.284711!10160-103A7;0.0475439!10180-103C9;0.000939159!10162-103A9;0.4663!10021-101D3;0.0580863!10840-111E3;0.401163!10706-109H4;0.00236696!10033-101E6;0.555377!10032-101E5;0.00400282!10490-107B4;0.000585679!10439-106E7;0.610022!10022-101D4;0.744997!10176-103C5;0.0453928!10469-106I1;0.000143264!10067-101I4;0.0935422!10411-106B6;0.00223519!10471-106I3;0.513509!10030-101E3;0.0212028!10475-106I7;0.0176695!10787-110H4;0.170997!10477-106I9;0.736033!10695-109G2;0.159622!11771-123I7;0.0639199!11772-123I8;0.482548!11773-123I9;0.0154841!10093-102C3;0.385589!10442-106F1;0.0735131!10442-106F1;0.198471!10201-103F3;0.273692!10639-108I9;0.0599608!11843-124H7;0.98253!11841-124H5;0.0259314!10693-109F9;0.368027!10436-106E4;0.0894245!10483-107A6;0.0908601!10282-104F3;0.10815!10023-101D5;0.00199192!10066-101I3;0.00483656!10065-101I2;0.0126016!10800-110I8;0.0106407!10610-108F7;0.667222!10841-111E4;0.182815!10541-107H1;0.836557!10842-111E5;0.665932!10562-108A4;0.304831!10024-101D6;0.367008!10064-101I1;0.30282!10609-108F6;0.0402296!10048-101G3;0.0414808!10781-110G7;0.00489389!10181-103D1;0.413354!10159-103A6;0.019356!10056-101H2;0.0214995!10737-110B8;0.00680315!10025-101D7;0.254097!10044-101F8;0.239786!10424-106D1;0.672643!10463-106H4;0.0137517!10616-108G4;0.224937!10486-107A9;0.00318569!10062-101H8;0.0115554!10202-103F4;0.0317837!10158-103A5;0.083621!10441-106E9;0.0146206!10031-101E4;0.955649!10063-101H9;0.00152707!10063-101H9;0.000377426!11763-123H8;0.0362582!11765-123I1;0.0259564!11768-123I4;0.118226!10807-111A6;0.114416!10790-110H7;0.0122249!10798-110I6;0.217373!10786-110H3;0.36785!10591-108D6;0.423299!10593-108D8;0.389412!10590-108D5;0.184695!10026-101D8;0.832443!10096-102C6;0.010827!10168-103B6;0.000255025!10154-103A1;0.0047994!10209-103G2;0.0012129!10061-101H7;0.0266438!10027-101D9;0.00717951!10043-101F7;0.630771!10783-110G9;0.875!10028-101E1;0.738286!10060-101H6;0.0499695!10203-103F5;0.0109256!10059-101H5;0.016548!10047-101G2;0.0134981!10029-101E2;0.240319!10058-101H4;0.13347!10418-106C4;0.0115972!10492-107B6;0.888713!10694-109G1;0.38103!10797-110I5;0.0893461!10057-101H3;0.402852!10100-102D1;0.00892329!10055-101H1;0.0144458!10204-103F6;0.00330539!10191-103E2;0.023461!10563-108A5;0.135058
|name=10-GGGAAGTGACG,CNhs13546,BestGuess:SPI1.p2.SwissRegulon.nucfreq(0.748115754357721),T:285.0(6.10%),B:880.7(1.99%),P:1e-58
|name=10-GGGAAGTGACG,CNhs13546,BestGuess:SPI1.p2.SwissRegulon.nucfreq(0.748115754357721),T:285.0(6.10%),B:880.7(1.99%),P:1e-58
|tomtom_result=GABPA#MA0062.2;1;0.0010142;0.482757;0.472079;10;GGGAAGTGACG;CCGGAAGTGGC;+!SPI1#MA0080.2;0;0.00122347;0.582371;0.472079;7;GGGAAGTGACG;AGGAAGT;+!SPI1#MA0080.2;0;0.00148764;0.708119;0.472079;6;GGGAAGTGACG;CGGAAG;+!ABF1#MA0265.1;4;0.00550885;2.62221;0.961356;11;GGGAAGTGACG;TCGTATAAAGTGATAA;+!GCR2#MA0305.1;0;0.00643054;3.06094;0.961356;7;GGGAAGTGACG;AGGAAGC;-!Pax2#MA0067.1;-3;0.0065227;3.10481;0.961356;8;GGGAAGTGACG;GCGTGACT;-!NF-kappaB#MA0061.1;0;0.00806728;3.84003;0.961356;10;GGGAAGTGACG;GGAAATTCCC;-!hkb#MA0450.1;0;0.00843927;4.01709;0.961356;9;GGGAAGTGACG;GGGGCGTGA;+!h#MA0449.1;0;0.0100983;4.80678;0.961356;10;GGGAAGTGACG;GGCACGTGCC;+!FEV#MA0156.1;1;0.0178163;8.48055;1;7;GGGAAGTGACG;CAGGAAAT;+!Nkx3-2#MA0122.1;-1;0.0183838;8.7507;1;9;GGGAAGTGACG;TTAAGTGGA;+!ELF5#MA0136.1;1;0.0183838;8.7507;1;8;GGGAAGTGACG;AAGGAAGTA;-
}}
}}

Latest revision as of 12:29, 7 September 2012

Full Name: 10-GGGAAGTGACG,CNhs13546,BestGuess:SPI1.p2.SwissRegulon.nucfreq(0.748115754357721),T:285.0(6.10%),B:880.7(1.99%),P:1e-58

Motif matrix
POACGT
135.05515.96203.20530.78
219.3818.525227.14519.95
321.665.985251.0856.27
4230.2821.37516.81516.53
5247.09518.248.5511.115
618.8123.655225.1517.385
718.2416.2453.99246.525
822.2328.785207.76526.22
9250.2314.2511.49.12
1011.685249.098.83515.39
1118.5255.13229.7131.635

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
GABPA#MA0062.210.00101420.4827570.47207910GGGAAGTGACGCCGGAAGTGGC+
SPI1#MA0080.200.001223470.5823710.4720797GGGAAGTGACGAGGAAGT+
SPI1#MA0080.200.001487640.7081190.4720796GGGAAGTGACGCGGAAG+
ABF1#MA0265.140.005508852.622210.96135611GGGAAGTGACGTCGTATAAAGTGATAA+
GCR2#MA0305.100.006430543.060940.9613567GGGAAGTGACGAGGAAGC-
Pax2#MA0067.1-30.00652273.104810.9613568GGGAAGTGACGGCGTGACT-
NF-kappaB#MA0061.100.008067283.840030.96135610GGGAAGTGACGGGAAATTCCC-
hkb#MA0450.100.008439274.017090.9613569GGGAAGTGACGGGGGCGTGA+
h#MA0449.100.01009834.806780.96135610GGGAAGTGACGGGCACGTGCC+
FEV#MA0156.110.01781638.4805517GGGAAGTGACGCAGGAAAT+
Nkx3-2#MA0122.1-10.01838388.750719GGGAAGTGACGTTAAGTGGA+
ELF5#MA0136.110.01838388.750718GGGAAGTGACGAAGGAAGTA-
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