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MacroAPE 1083:SP1 f1: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;682.6436366358055;443.1455214015781;2075.655346294993;287.211468117951!2;299.8883246804867;103.74338315843572;2613.8927022405364;471.1315623...")
 
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7;0.0322435!11754-123G8;0.592138!11755-123G9;0.270949!11756-123H1;0.903319!11833-124G6;0.929178!11760-123H5;0.722974!11836-124G9;0.905911!11758-123H3;0.521574!11835-124G8;0.380522!11762-123H7;0.109731!11838-124H2;0.0787374!11757-123H2;0.00740814!11759-123H4;0.649302!11761-123H6;0.503364!11842-124H6;0.0550146!11837-124H1;0.0715914!10568-108B1;0.806313!13230-141I8;0.52234!13231-141I9;0.164412!10696-109G3;0.204934!10493-107B7;0.13997!10494-107B8;0.00539478!10850-111F4;0.186229!10851-111F5;0.239852!10852-111F6;0.0853776!10853-111F7;0.0263517!10854-111F8;0.813011!10855-111F9;0.0410008!10856-111G1;0.142645!10847-111F1;0.169947!10846-111E9;0.130891!10848-111F2;0.111615!10845-111E8;0.115733!10857-111G2;0.0945945!10858-111G3;0.610133!10156-103A3;0.0288129!11901-125F2;0.00173669!11902-125F3;0.0185722!11903-125F4;0.00479057!10689-109F5;0.011908!10648-109A9;0.741012!10784-110H1;0.258726!10744-110C6;0.0339306!10772-110F7;0.427103!10474-106I6;0.203297!10600-108E6;0.0253104!10684-109E9;0.172791!12226-129F3;0.54985!12227-129F4;0.00129575!10508-107D4;0.0863579!10539-107G8;0.0015811!10607-108F4;0.000243863!10555-107I6;0.0241572!10774-110F9;0.000943207!10637-108I7;0.336369!10663-109C6;0.00543441!10728-110A8;0.0331543!10729-110A9;0.0191004!10430-106D7;0.600016!10730-110B1;0.0748545!10813-111B3;0.0846649!10812-111B2;0.10808!10037-101F1;0.0472971!10172-103C1;0.00590514!10163-103B1;0.00366739!10076-102A4;0.00152193!10073-102A1;0.00256912!10036-101E9;0.00280185!10195-103E6;0.00406056!10277-104E7;0.003502!10434-106E2;0.00306785!10550-107I1;0.00334009!10545-107H5;0.010684!10544-107H4;0.0478551!10704-109H2;0.824143!10510-107D6;0.555146!10558-107I9;0.0228398!10020-101D2;0.0802301!10732-110B3;0.0052648!10049-101G4;0.678959!10698-109G5;0.524781!10437-106E5;0.0143223!10417-106C3;0.0758123!10035-101E8;0.00497673!10171-103B9;0.00400982!10157-103A4;0.00376026!10034-101E7;0.00236279!10072-101I9;0.00416014!10199-103F1;0.00277093!10200-103F2;0.123025!10697-109G4;0.00260584!10723-110A3;0.000948147!10179-103C8;0.0988241!10160-103A7;0.00106233!10180-103C9;0.00119015!10162-103A9;0.0159205!10021-101D3;0.0130752!10840-111E3;0.300759!10706-109H4;0.314425!10033-101E6;0.000738944!10032-101E5;0.00193448!10490-107B4;0.00330006!10439-106E7;0.00831649!10022-101D4;0.0019048!10176-103C5;0.0446292!10469-106I1;0.00935922!10067-101I4;0.0020331!10411-106B6;0.000425964!10471-106I3;1.88678e-06!10030-101E3;0.0004465!10475-106I7;0.00562667!10787-110H4;0.184559!10477-106I9;0.24031!10695-109G2;0.00223357!11771-123I7;0.0355139!11772-123I8;0.000577494!11773-123I9;0.00266232!10093-102C3;0.0117322!10442-106F1;0.0719322!10442-106F1;0.0291935!10201-103F3;0.0126962!10639-108I9;0.163862!11843-124H7;0.000847051!11841-124H5;0.00796367!10693-109F9;0.0160104!10436-106E4;0.0062126!10483-107A6;0.00131028!10282-104F3;0.00426697!10023-101D5;3.37228e-06!10066-101I3;0.000215377!10065-101I2;0.00189344!10800-110I8;0.00796312!10610-108F7;0.528923!10841-111E4;0.28836!10541-107H1;0.0155967!10842-111E5;0.0544877!10562-108A4;0.230096!10024-101D6;0.889064!10064-101I1;0.130963!10609-108F6;0.166955!10048-101G3;0.636268!10781-110G7;0.000742966!10181-103D1;0.108763!10159-103A6;0.000421181!10056-101H2;0.000374584!10737-110B8;0.000162517!10025-101D7;0.229081!10044-101F8;0.0529081!10424-106D1;0.170455!10463-106H4;0.518596!10616-108G4;0.00491243!10486-107A9;0.00261845!10062-101H8;0.517935!10202-103F4;0.104883!10158-103A5;0.791741!10441-106E9;0.000144938!10031-101E4;0.0853112!10063-101H9;0.00522623!10063-101H9;0.00303424!11763-123H8;0.00194741!11765-123I1;0.239921!11768-123I4;0.707163!10807-111A6;0.7619!10790-110H7;0.063564!10798-110I6;0.151407!10786-110H3;0.878987!10591-108D6;0.0307551!10593-108D8;0.297116!10590-108D5;0.34594!10026-101D8;0.0125255!10096-102C6;0.00529106!10168-103B6;0.0717511!10154-103A1;0.0029163!10209-103G2;0.00054377!10061-101H7;0.139149!10027-101D9;0.000277849!10043-101F7;0.0111674!10783-110G9;0.13207!10028-101E1;0.438174!10060-101H6;0.89213!10203-103F5;0.00350784!10059-101H5;0.397354!10047-101G2;0.00798685!10029-101E2;0.319805!10058-101H4;0.786528!10418-106C4;0.00540789!10492-107B6;0.867548!10694-109G1;0.23236!10797-110I5;0.0399902!10057-101H3;0.0285087!10100-102D1;0.0171058!10055-101H1;0.0183!10204-103F6;0.0196434!10191-103E2;0.0362371!10563-108A5;0.00990229
|name=SP1_f1
|name=SP1_f1
|tomtom_result=SP1#MA0079.2;0;5.64089e-10;2.68506e-07;5.25913e-07;10;GGGGGCGGGGC;GGGGGCGGGG;-!Klf4#MA0039.2;-1;5.06918e-06;0.00241293;0.00236306;10;GGGGGCGGGGC;TGGGTGGGGC;+!SP1#MA0079.2;-1;2.20459e-05;0.0104939;0.00545462;10;GGGGGCGGGGC;GGGGCGGGGT;+!btd#MA0443.1;1;2.34023e-05;0.0111395;0.00545462;9;GGGGGCGGGGC;AGGGGGCGGA;+!YGR067C#MA0425.1;3;0.000159779;0.0760547;0.0297931;11;GGGGGCGGGGC;TGAAAAAGTGGGGT;-!YML081W#MA0431.1;-2;0.000261129;0.124297;0.0405761;9;GGGGGCGGGGC;GTGCGGGGT;-!MIG2#MA0338.1;-3;0.00031116;0.148112;0.0414431;7;GGGGGCGGGGC;TGCGGGG;-!abi4#MA0123.1;0;0.000364583;0.173542;0.0424886;10;GGGGGCGGGGC;GGGGGCACCG;-!MIG3#MA0339.1;-3;0.000443799;0.211248;0.0459738;7;GGGGGCGGGGC;TGCGGGG;-!CHA4#MA0283.1;-3;0.000621449;0.29581;0.0546516;8;GGGGGCGGGGC;GGCGGAGA;+!Zfx#MA0146.1;0;0.000644806;0.306928;0.0546516;11;GGGGGCGGGGC;GGGGCCGAGGCCTG;+!IXR1#MA0323.1;5;0.000813168;0.387068;0.063151;10;GGGGGCGGGGC;AAGCCGGAAGCGGGG;+!SUT1#MA0399.1;-3;0.000972042;0.462692;0.063151;7;GGGGGCGGGGC;CGCGGGG;+!hkb#MA0450.1;-1;0.000978186;0.465616;0.063151;9;GGGGGCGGGGC;GGGGCGTGA;+!CRZ1#MA0285.1;-1;0.00107293;0.510715;0.063151;9;GGGGGCGGGGC;GTGGCTTAG;-!MIG1#MA0337.1;-4;0.00108376;0.515871;0.063151;7;GGGGGCGGGGC;GCGGGGG;-!UGA3#MA0410.1;-2;0.00216727;1.03162;0.118858;8;GGGGGCGGGGC;CGGCGGGA;+!RPN4#MA0373.1;0;0.00349792;1.66501;0.181177;7;GGGGGCGGGGC;GGTGGCG;+!MSN2#MA0341.1;0;0.00444975;2.11808;0.204597;5;GGGGGCGGGGC;AGGGG;+!ZMS1#MA0441.1;-3;0.00476779;2.26947;0.204597;8;GGGGGCGGGGC;TGCGGGGAA;-!Egr1#MA0162.1;3;0.004791;2.28051;0.204597;8;GGGGGCGGGGC;TGCGTGGGCGT;+!opa#MA0456.1;1;0.00482787;2.29807;0.204597;11;GGGGGCGGGGC;CAGCGGGGGGTC;-!NHP10#MA0344.1;-3;0.00526727;2.50722;0.213513;8;GGGGGCGGGGC;GCCGGGGA;+!ADR1#MA0268.1;-4;0.00618485;2.94399;0.230651;7;GGGGGCGGGGC;GTGGGGT;-!YPR022C#MA0436.1;-3;0.00618485;2.94399;0.230651;7;GGGGGCGGGGC;CGTGGGG;-!Pax4#MA0068.1;3;0.00651749;3.10232;0.232273;11;GGGGGCGGGGC;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!CTCF#MA0139.1;9;0.00672661;3.20186;0.232273;10;GGGGGCGGGGC;TGGCCACCAGGGGGCGCTA;+!Pax5#MA0014.1;7;0.00830312;3.95229;0.276471;11;GGGGGCGGGGC;GGAGCACTGAAGCGTAACCG;+!DAL81#MA0290.1;7;0.0095291;4.53585;0.306352;11;GGGGGCGGGGC;AAAAGCCGCGGGCGGGATT;+!MSN4#MA0342.1;0;0.0132752;6.31897;0.412558;5;GGGGGCGGGGC;AGGGG;+!RREB1#MA0073.1;0;0.0151895;7.23019;0.448813;11;GGGGGCGGGGC;TGGGGGGGGGTGGTTTGGGG;-!MZF1_5-13#MA0057.1;0;0.0155465;7.40013;0.448813;10;GGGGGCGGGGC;GGAGGGGGAA;+!RSC30#MA0375.1;-1;0.0159426;7.58869;0.448813;8;GGGGGCGGGGC;CGCGCGCG;-!AFT2#MA0270.1;-1;0.016577;7.89064;0.448813;8;GGGGGCGGGGC;GGGGTGTG;-!usp#MA0016.1;0;0.0172676;8.21938;0.448813;10;GGGGGCGGGGC;GGGGTCACGG;+!INSM1#MA0155.1;5;0.0178115;8.47827;0.448813;7;GGGGGCGGGGC;TGTCAGGGGGCG;+!STP1#MA0394.1;-3;0.0193403;9.20599;0.474511;8;GGGGGCGGGGC;TGCGGCGC;+!RDS2#MA0362.1;-3;0.0205048;9.76027;0.480593;7;GGGGGCGGGGC;CTCGGGG;+
}}
}}

Latest revision as of 12:53, 7 September 2012

Full Name: SP1_f1

Motif matrix
POACGT
1682.6436366358055443.14552140157812075.655346294993287.211468117951
2299.8883246804867103.743383158435722613.8927022405364471.1315623708902
3591.489249332470942.6318275417945642845.16540831485649.36948726124641
47.07108474236159245.290934112312323432.88477043741073.409183158303573
591.30898408571319.15364813643323373.6569498801374.5363903481026
6809.20829733879322246.94195417621161.30766021687515371.19806071846244
7120.5647643586605542.43492444035913242.156062868403883.50022078295852
813.7252447740995935.8582205192975253332.4066864946167106.66582066236779
9558.118808016163990.00845042003562694.854973210736145.67374080342415
10264.0088462230318254.71758680818662796.88087480315173.0486646159857
11519.460139142821874.9349086474765654.5411208373813439.7198038226514

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
SP1#MA0079.205.64089e-102.68506e-075.25913e-0710GGGGGCGGGGCGGGGGCGGGG-
Klf4#MA0039.2-15.06918e-060.002412930.0023630610GGGGGCGGGGCTGGGTGGGGC+
SP1#MA0079.2-12.20459e-050.01049390.0054546210GGGGGCGGGGCGGGGCGGGGT+
btd#MA0443.112.34023e-050.01113950.005454629GGGGGCGGGGCAGGGGGCGGA+
YGR067C#MA0425.130.0001597790.07605470.029793111GGGGGCGGGGCTGAAAAAGTGGGGT-
YML081W#MA0431.1-20.0002611290.1242970.04057619GGGGGCGGGGCGTGCGGGGT-
MIG2#MA0338.1-30.000311160.1481120.04144317GGGGGCGGGGCTGCGGGG-
abi4#MA0123.100.0003645830.1735420.042488610GGGGGCGGGGCGGGGGCACCG-
MIG3#MA0339.1-30.0004437990.2112480.04597387GGGGGCGGGGCTGCGGGG-
CHA4#MA0283.1-30.0006214490.295810.05465168GGGGGCGGGGCGGCGGAGA+
Zfx#MA0146.100.0006448060.3069280.054651611GGGGGCGGGGCGGGGCCGAGGCCTG+
IXR1#MA0323.150.0008131680.3870680.06315110GGGGGCGGGGCAAGCCGGAAGCGGGG+
SUT1#MA0399.1-30.0009720420.4626920.0631517GGGGGCGGGGCCGCGGGG+
hkb#MA0450.1-10.0009781860.4656160.0631519GGGGGCGGGGCGGGGCGTGA+
CRZ1#MA0285.1-10.001072930.5107150.0631519GGGGGCGGGGCGTGGCTTAG-
MIG1#MA0337.1-40.001083760.5158710.0631517GGGGGCGGGGCGCGGGGG-
UGA3#MA0410.1-20.002167271.031620.1188588GGGGGCGGGGCCGGCGGGA+
RPN4#MA0373.100.003497921.665010.1811777GGGGGCGGGGCGGTGGCG+
MSN2#MA0341.100.004449752.118080.2045975GGGGGCGGGGCAGGGG+
ZMS1#MA0441.1-30.004767792.269470.2045978GGGGGCGGGGCTGCGGGGAA-
Egr1#MA0162.130.0047912.280510.2045978GGGGGCGGGGCTGCGTGGGCGT+
opa#MA0456.110.004827872.298070.20459711GGGGGCGGGGCCAGCGGGGGGTC-
NHP10#MA0344.1-30.005267272.507220.2135138GGGGGCGGGGCGCCGGGGA+
ADR1#MA0268.1-40.006184852.943990.2306517GGGGGCGGGGCGTGGGGT-
YPR022C#MA0436.1-30.006184852.943990.2306517GGGGGCGGGGCCGTGGGG-
Pax4#MA0068.130.006517493.102320.23227311GGGGGCGGGGCGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
CTCF#MA0139.190.006726613.201860.23227310GGGGGCGGGGCTGGCCACCAGGGGGCGCTA+
Pax5#MA0014.170.008303123.952290.27647111GGGGGCGGGGCGGAGCACTGAAGCGTAACCG+
DAL81#MA0290.170.00952914.535850.30635211GGGGGCGGGGCAAAAGCCGCGGGCGGGATT+
MSN4#MA0342.100.01327526.318970.4125585GGGGGCGGGGCAGGGG+
RREB1#MA0073.100.01518957.230190.44881311GGGGGCGGGGCTGGGGGGGGGTGGTTTGGGG-
MZF1_5-13#MA0057.100.01554657.400130.44881310GGGGGCGGGGCGGAGGGGGAA+
RSC30#MA0375.1-10.01594267.588690.4488138GGGGGCGGGGCCGCGCGCG-
AFT2#MA0270.1-10.0165777.890640.4488138GGGGGCGGGGCGGGGTGTG-
usp#MA0016.100.01726768.219380.44881310GGGGGCGGGGCGGGGTCACGG+
INSM1#MA0155.150.01781158.478270.4488137GGGGGCGGGGCTGTCAGGGGGCG+
STP1#MA0394.1-30.01934039.205990.4745118GGGGGCGGGGCTGCGGCGC+
RDS2#MA0362.1-30.02050489.760270.4805937GGGGGCGGGGCCTCGGGG+
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