FFCP PHASE1:Hg19::chr22:41985798..41985852,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr22:41985798..41985852,-
|short_description=p1@PMM1
|description=CAGE_peak_1_at_PMM1_5end
|association_with_transcript=0bp_to_ENST00000414636,ENST00000466645,...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5372 | |EntrezGene=5372 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9114 | |HGNC=9114 | ||
|TSSclassifier=strong | |||
|UniProt=F8WFD5 | |UniProt=F8WFD5 | ||
|association_with_transcript=0bp_to_ENST00000414636,ENST00000466645,ENST00000478337,ENST00000485648,ENST00000493389_5end | |||
|cluster_id=chr22:41985798..41985852,- | |||
|coexpression_cluster_id=C385 | |||
|description=CAGE_peak_1_at_PMM1_5end | |||
|id=chr22:41985798..41985852,- | |||
|ontology_enrichment_celltype=CL:0000055!2.23e-29!180;CL:0000183!4.74e-20!59;CL:0000680!5.59e-19!57;CL:0000056!5.59e-19!57;CL:0000355!5.59e-19!57;CL:0000187!9.86e-19!54;CL:0000192!2.18e-17!42;CL:0000514!2.18e-17!42;CL:0000393!3.58e-16!60;CL:0000211!3.58e-16!60;CL:0000359!3.07e-14!32;CL:0000057!5.82e-13!75 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.73e-13;32!CL:0000192;5.09e-13;43!CL:0000187;6.72e-11;55!CL:0000393;4.82e-09;61!CL:0000211;4.82e-09;61!CL:0000134;6.06e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,1.47e-19,58;CL:0000056,1.47e-19,58;CL:0000355,1.47e-19,58;CL:0000187,2.57e-19,55;CL:0000192,5.55e-18,43;CL:0000514,5.55e-18,43;CL:0000393,1.01e-16,61;CL:0000211,1.01e-16,61;CL:0000359,3.07e-14,32;CL:0000057,5.44e-13,76 | |||
|ontology_enrichment_development_v019=CL:0000514;5.09e-13;43!CL:0000355;1.53e-10;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.31e-24!365;UBERON:0000914!1.54e-22!83;UBERON:0002329!1.54e-22!83;UBERON:0003077!1.54e-22!83;UBERON:0003059!1.54e-22!83;UBERON:0007282!1.54e-22!83;UBERON:0009618!1.54e-22!83;UBERON:0007285!1.54e-22!83;UBERON:0005256!8.13e-21!143;UBERON:0000481!1.18e-19!347;UBERON:0004290!1.49e-19!70;UBERON:0000486!2.45e-19!82;UBERON:0002100!4.12e-17!216;UBERON:0001134!5.62e-17!61;UBERON:0002036!5.62e-17!61;UBERON:0003082!5.62e-17!61;UBERON:0002385!9.59e-17!63;UBERON:0001015!9.59e-17!63;UBERON:0000383!9.59e-17!63;UBERON:0003104!2.63e-13!238;UBERON:0009142!2.63e-13!238;UBERON:0000119!2.52e-11!312;UBERON:0000483!3.79e-11!309;UBERON:0003102!9.15e-08!95;UBERON:0002199!3.43e-07!45;UBERON:0002416!3.43e-07!45 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,1.31e-20,73;UBERON:0003077,2.62e-20,72;UBERON:0007285,2.62e-20,72;UBERON:0002329,4.06e-20,71;UBERON:0003059,4.06e-20,71;UBERON:0007282,4.06e-20,71;UBERON:0004290,4.06e-20,71;UBERON:0009618,4.06e-20,71;UBERON:0003104,4.76e-20,160;UBERON:0009142,4.76e-20,160;UBERON:0007503,6.16e-20,78;UBERON:0000486,6.98e-20,83;UBERON:0001134,1.57e-17,62;UBERON:0002036,1.57e-17,62;UBERON:0003082,1.57e-17,62;UBERON:0002385,2.71e-17,64;UBERON:0001015,2.71e-17,64;UBERON:0000383,2.71e-17,64;UBERON:0005256,1.51e-15,122;UBERON:0002100,3.90e-14,199;UBERON:0000119,6.80e-12,309;UBERON:0000483,1.03e-11,306;UBERON:0003102,1.96e-08,99;UBERON:0002199,1.44e-07,46;UBERON:0002416,1.44e-07,46;UBERON:0000490,3.87e-07,148 | |||
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| ||
|short_description=p1@PMM1 | |||
}} | }} |
Latest revision as of 21:58, 24 September 2015
Short description: | p1@PMM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PMM1_5end |
Coexpression cluster: | C385_Mesenchymal_Alveolar_Osteoblast_Smooth_Renal_Placental_Fibroblast |
Association with transcript: | 0bp_to_ENST00000414636, ENST00000466645, ENST00000478337, ENST00000485648, ENST00000493389_5end |
EntrezGene: | PMM1 |
HGNC: | 9114 |
UniProt: | F8WFD5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 1.47e-19 | 58 |
myoblast | 1.47e-19 | 58 |
multi-potent skeletal muscle stem cell | 1.47e-19 | 58 |
muscle cell | 2.57e-19 | 55 |
smooth muscle cell | 5.55e-18 | 43 |
smooth muscle myoblast | 5.55e-18 | 43 |
electrically responsive cell | 1.01e-16 | 61 |
electrically active cell | 1.01e-16 | 61 |
vascular associated smooth muscle cell | 3.07e-14 | 32 |
fibroblast | 5.44e-13 | 76 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 1.31e-20 | 73 |
paraxial mesoderm | 2.62e-20 | 72 |
presumptive paraxial mesoderm | 2.62e-20 | 72 |
somite | 4.06e-20 | 71 |
presomitic mesoderm | 4.06e-20 | 71 |
presumptive segmental plate | 4.06e-20 | 71 |
dermomyotome | 4.06e-20 | 71 |
trunk paraxial mesoderm | 4.06e-20 | 71 |
mesenchyme | 4.76e-20 | 160 |
entire embryonic mesenchyme | 4.76e-20 | 160 |
epithelial vesicle | 6.16e-20 | 78 |
multilaminar epithelium | 6.98e-20 | 83 |
skeletal muscle tissue | 1.57e-17 | 62 |
striated muscle tissue | 1.57e-17 | 62 |
myotome | 1.57e-17 | 62 |
muscle tissue | 2.71e-17 | 64 |
musculature | 2.71e-17 | 64 |
musculature of body | 2.71e-17 | 64 |
trunk mesenchyme | 1.51e-15 | 122 |
trunk | 3.90e-14 | 199 |
cell layer | 6.80e-12 | 309 |
epithelium | 1.03e-11 | 306 |
surface structure | 1.96e-08 | 99 |
integument | 1.44e-07 | 46 |
integumental system | 1.44e-07 | 46 |
unilaminar epithelium | 3.87e-07 | 148 |