FFCP PHASE1:Hg19::chr5:82767238..82767265,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1462 | |EntrezGene=1462 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2464 | |HGNC=2464 | ||
|TSSclassifier=strong | |||
|UniProt=P13611 | |UniProt=P13611 | ||
|association_with_transcript=-18bp_to_ENST00000265077_5end | |association_with_transcript=-18bp_to_ENST00000265077_5end | ||
|cluster_id=chr5:82767238..82767265,+ | |||
|coexpression_cluster_id=C4523 | |coexpression_cluster_id=C4523 | ||
|description=CAGE_peak_6_at_VCAN_5end | |description=CAGE_peak_6_at_VCAN_5end | ||
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|ontology_enrichment_celltype=CL:0000055!3.70e-14!180;CL:0002057!1.05e-13!42;CL:0000860!1.86e-11!45;CL:0000393!1.34e-10!60;CL:0000211!1.34e-10!60;CL:0000680!3.13e-08!57;CL:0000056!3.13e-08!57;CL:0000355!3.13e-08!57;CL:0000187!4.16e-08!54;CL:0000183!1.69e-07!59 | |ontology_enrichment_celltype=CL:0000055!3.70e-14!180;CL:0002057!1.05e-13!42;CL:0000860!1.86e-11!45;CL:0000393!1.34e-10!60;CL:0000211!1.34e-10!60;CL:0000680!3.13e-08!57;CL:0000056!3.13e-08!57;CL:0000355!3.13e-08!57;CL:0000187!4.16e-08!54;CL:0000183!1.69e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0000860;6.65e-12;33!CL:0002057;6.65e-12;33!CL:0000576;1.35e-07;48!CL:0000473;3.53e-07;39!CL:0000234;3.53e-07;39 | |ontology_enrichment_celltype_v019=CL:0000860;6.65e-12;33!CL:0002057;6.65e-12;33!CL:0000576;1.35e-07;48!CL:0000473;3.53e-07;39!CL:0000234;3.53e-07;39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.48e-14,42;CL:0002057,2.48e-14,42;CL:0000473,7.07e-11,48;CL:0000234,7.07e-11,48;CL:0000393,2.55e-10,61;CL:0000211,2.55e-10,61;CL:0000034,7.87e-08,441;CL:0000187,1.60e-07,55;CL:0000680,3.46e-07,58;CL:0000056,3.46e-07,58;CL:0000355,3.46e-07,58;CL:0000048,3.81e-07,427;CL:0002194,8.00e-07,59;CL:0000576,8.00e-07,59;CL:0000040,8.00e-07,59;CL:0000559,8.00e-07,59 | |||
|ontology_enrichment_development_v019=CL:0002057;2.55e-10;42 | |ontology_enrichment_development_v019=CL:0002057;2.55e-10;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!4.23e-13!659;UBERON:0002204!1.96e-11!167;UBERON:0000922!2.67e-10!612;UBERON:0000467!7.37e-10!625;UBERON:0000480!1.15e-09!626;UBERON:0002050!3.07e-08!605;UBERON:0005423!3.07e-08!605;UBERON:0001134!4.06e-08!61;UBERON:0002036!4.06e-08!61;UBERON:0003082!4.06e-08!61;UBERON:0000923!5.98e-08!604;UBERON:0005291!5.98e-08!604;UBERON:0006598!5.98e-08!604;UBERON:0002532!5.98e-08!604;UBERON:0002385!8.84e-08!63;UBERON:0001015!8.84e-08!63;UBERON:0000383!8.84e-08!63;UBERON:0000914!1.23e-07!83;UBERON:0002329!1.23e-07!83;UBERON:0003077!1.23e-07!83;UBERON:0003059!1.23e-07!83;UBERON:0007282!1.23e-07!83;UBERON:0009618!1.23e-07!83;UBERON:0007285!1.23e-07!83;UBERON:0001017!2.64e-07!82;UBERON:0004290!6.92e-07!70 | |ontology_enrichment_uberon=UBERON:0000468!4.23e-13!659;UBERON:0002204!1.96e-11!167;UBERON:0000922!2.67e-10!612;UBERON:0000467!7.37e-10!625;UBERON:0000480!1.15e-09!626;UBERON:0002050!3.07e-08!605;UBERON:0005423!3.07e-08!605;UBERON:0001134!4.06e-08!61;UBERON:0002036!4.06e-08!61;UBERON:0003082!4.06e-08!61;UBERON:0000923!5.98e-08!604;UBERON:0005291!5.98e-08!604;UBERON:0006598!5.98e-08!604;UBERON:0002532!5.98e-08!604;UBERON:0002385!8.84e-08!63;UBERON:0001015!8.84e-08!63;UBERON:0000383!8.84e-08!63;UBERON:0000914!1.23e-07!83;UBERON:0002329!1.23e-07!83;UBERON:0003077!1.23e-07!83;UBERON:0003059!1.23e-07!83;UBERON:0007282!1.23e-07!83;UBERON:0009618!1.23e-07!83;UBERON:0007285!1.23e-07!83;UBERON:0001017!2.64e-07!82;UBERON:0004290!6.92e-07!70 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,1.34e-08,167;UBERON:0000948,3.57e-07,24;UBERON:0005498,3.57e-07,24;UBERON:0004140,3.57e-07,24;UBERON:0009881,3.57e-07,24;UBERON:0004141,3.57e-07,24;UBERON:0003084,3.57e-07,24;UBERON:0007005,3.57e-07,24;UBERON:0004139,3.57e-07,24;UBERON:0004291,3.57e-07,24;UBERON:0000926,6.77e-07,315;UBERON:0004120,6.77e-07,315;UBERON:0006603,6.77e-07,315;UBERON:0001134,9.22e-07,62;UBERON:0002036,9.22e-07,62;UBERON:0003082,9.22e-07,62 | |||
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| ||
|short_description=p6@VCAN | |short_description=p6@VCAN | ||
}} | }} |
Latest revision as of 00:36, 19 September 2015
Short description: | p6@VCAN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_VCAN_5end |
Coexpression cluster: | C4523_Fibroblast_iPS_H9_serous_Smooth_HES3GFP_hepatoblastoma |
Association with transcript: | -18bp_to_ENST00000265077_5end |
EntrezGene: | VCAN |
HGNC: | 2464 |
UniProt: | P13611 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.48e-14 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.48e-14 | 42 |
defensive cell | 7.07e-11 | 48 |
phagocyte | 7.07e-11 | 48 |
electrically responsive cell | 2.55e-10 | 61 |
electrically active cell | 2.55e-10 | 61 |
stem cell | 7.87e-08 | 441 |
muscle cell | 1.60e-07 | 55 |
muscle precursor cell | 3.46e-07 | 58 |
myoblast | 3.46e-07 | 58 |
multi-potent skeletal muscle stem cell | 3.46e-07 | 58 |
multi fate stem cell | 3.81e-07 | 427 |
monopoietic cell | 8.00e-07 | 59 |
monocyte | 8.00e-07 | 59 |
monoblast | 8.00e-07 | 59 |
promonocyte | 8.00e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 1.34e-08 | 167 |
heart | 3.57e-07 | 24 |
primitive heart tube | 3.57e-07 | 24 |
primary heart field | 3.57e-07 | 24 |
anterior lateral plate mesoderm | 3.57e-07 | 24 |
heart tube | 3.57e-07 | 24 |
heart primordium | 3.57e-07 | 24 |
cardiac mesoderm | 3.57e-07 | 24 |
cardiogenic plate | 3.57e-07 | 24 |
heart rudiment | 3.57e-07 | 24 |
mesoderm | 6.77e-07 | 315 |
mesoderm-derived structure | 6.77e-07 | 315 |
presumptive mesoderm | 6.77e-07 | 315 |
skeletal muscle tissue | 9.22e-07 | 62 |
striated muscle tissue | 9.22e-07 | 62 |
myotome | 9.22e-07 | 62 |