FFCP PHASE1:Hg19::chr22:39548511..39548598,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr22:39548511..39548598,-
|short_description=p1@CBX7
|description=CAGE_peak_1_at_CBX7_5end
|association_with_transcript=0bp_to_ENST00000434260,ENST00000477827,...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23492 | |EntrezGene=23492 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1557 | |HGNC=1557 | ||
|TSSclassifier=strong | |||
|UniProt=B0QYP3,O95931 | |UniProt=B0QYP3,O95931 | ||
|association_with_transcript=0bp_to_ENST00000434260,ENST00000477827,NM_175709,uc003axb.2,uc003axc.2_5end | |||
|cluster_id=chr22:39548511..39548598,- | |||
|coexpression_cluster_id=C2646 | |||
|description=CAGE_peak_1_at_CBX7_5end | |||
|id=chr22:39548511..39548598,- | |||
|ontology_enrichment_celltype=CL:0000791!6.65e-08!18;CL:0000789!6.65e-08!18;CL:0002420!6.65e-08!18;CL:0002419!6.65e-08!18;CL:0000790!6.65e-08!18;CL:0000838!3.65e-07!52;CL:0000738!4.05e-07!140 | |||
|ontology_enrichment_celltype_v019=CL:0000791;4.07e-08;18!CL:0000789;4.07e-08;18!CL:0002419;4.07e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,5.26e-08,18;CL:0000789,5.26e-08,18;CL:0002420,5.26e-08,18;CL:0002419,5.26e-08,18;CL:0000790,5.26e-08,18;CL:0000838,2.13e-07,52;CL:0000738,2.72e-07,136;CL:0000542,6.90e-07,53;CL:0000051,6.90e-07,53 | |||
|ontology_enrichment_development_v019=CL:0000790;4.07e-08;18!UBERON:0006601;2.39e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!9.85e-62!115;UBERON:0001049!7.96e-23!57;UBERON:0005068!7.96e-23!57;UBERON:0006241!7.96e-23!57;UBERON:0007135!7.96e-23!57;UBERON:0003080!2.15e-18!42;UBERON:0002780!4.53e-18!41;UBERON:0001890!4.53e-18!41;UBERON:0006240!4.53e-18!41;UBERON:0002616!6.94e-18!59;UBERON:0000955!8.72e-16!69;UBERON:0006238!8.72e-16!69;UBERON:0001893!9.69e-15!34;UBERON:0002020!1.08e-14!34;UBERON:0003528!1.08e-14!34;UBERON:0003075!3.11e-14!86;UBERON:0007284!3.11e-14!86;UBERON:0002791!4.21e-14!33;UBERON:0001869!1.03e-13!32;UBERON:0001017!2.73e-13!82;UBERON:0002619!4.12e-13!22;UBERON:0002346!9.19e-13!90;UBERON:0005743!2.36e-12!86;UBERON:0001950!4.33e-12!20;UBERON:0000956!5.60e-10!25;UBERON:0000203!5.60e-10!25;UBERON:0000073!5.60e-10!94;UBERON:0001016!5.60e-10!94;UBERON:0003056!9.28e-09!61;UBERON:0000153!2.03e-07!129;UBERON:0007811!2.03e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;2.85e-16;114!UBERON:0002780;1.66e-13;41!UBERON:0001890;1.66e-13;41!UBERON:0002619;2.35e-13;22!UBERON:0000073;5.46e-13;53!UBERON:0002616;5.46e-13;53!UBERON:0001893;5.62e-13;34!UBERON:0003528;1.08e-12;34!UBERON:0002020;1.08e-12;34!UBERON:0001869;1.56e-12;32!UBERON:0002791;1.98e-12;32!UBERON:0001950;2.62e-12;20!UBERON:0000956;3.06e-10;25!UBERON:0000203;3.06e-10;25!UBERON:0000955;1.35e-07;68!UBERON:0001017;4.36e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.98e-62,114;UBERON:0001049,8.09e-23,56;UBERON:0005068,8.09e-23,56;UBERON:0006241,8.09e-23,56;UBERON:0007135,8.09e-23,56;UBERON:0000073,8.09e-22,53;UBERON:0002616,8.09e-22,53;UBERON:0002780,2.74e-18,41;UBERON:0001890,2.74e-18,41;UBERON:0003080,2.74e-18,41;UBERON:0006240,2.74e-18,41;UBERON:0000955,1.15e-15,68;UBERON:0006238,1.15e-15,68;UBERON:0001893,6.62e-15,34;UBERON:0003528,7.40e-15,34;UBERON:0002020,7.40e-15,34;UBERON:0003075,6.08e-14,82;UBERON:0007284,6.08e-14,82;UBERON:0001869,7.26e-14,32;UBERON:0002791,1.00e-13,32;UBERON:0002619,2.69e-13,22;UBERON:0001017,4.37e-13,81;UBERON:0002346,2.06e-12,86;UBERON:0001950,2.94e-12,20;UBERON:0001016,1.11e-10,89;UBERON:0000956,4.52e-10,25;UBERON:0000203,4.52e-10,25;UBERON:0003056,2.86e-09,61;UBERON:0010371,6.44e-08,104;UBERON:0010314,7.04e-08,132 | |||
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| ||
|short_description=p1@CBX7 | |||
}} | }} |
Latest revision as of 18:08, 24 September 2015
Short description: | p1@CBX7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CBX7_5end |
Coexpression cluster: | C2646_occipital_temporal_cerebellum_postcentral_cerebral_insula_parietal |
Association with transcript: | 0bp_to_ENST00000434260, ENST00000477827, NM_175709, uc003axb.2, uc003axc.2_5end |
EntrezGene: | CBX7 |
HGNC: | 1557 |
UniProt: | B0QYP3O95931 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 5.26e-08 | 18 |
alpha-beta T cell | 5.26e-08 | 18 |
immature T cell | 5.26e-08 | 18 |
mature T cell | 5.26e-08 | 18 |
immature alpha-beta T cell | 5.26e-08 | 18 |
lymphoid lineage restricted progenitor cell | 2.13e-07 | 52 |
leukocyte | 2.72e-07 | 136 |
lymphocyte | 6.90e-07 | 53 |
common lymphoid progenitor | 6.90e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
adult organism | 5.98e-62 | 114 |
neural tube | 8.09e-23 | 56 |
neural rod | 8.09e-23 | 56 |
future spinal cord | 8.09e-23 | 56 |
neural keel | 8.09e-23 | 56 |
regional part of nervous system | 8.09e-22 | 53 |
regional part of brain | 8.09e-22 | 53 |
regional part of forebrain | 2.74e-18 | 41 |
forebrain | 2.74e-18 | 41 |
anterior neural tube | 2.74e-18 | 41 |
future forebrain | 2.74e-18 | 41 |
brain | 1.15e-15 | 68 |
future brain | 1.15e-15 | 68 |
telencephalon | 6.62e-15 | 34 |
brain grey matter | 7.40e-15 | 34 |
gray matter | 7.40e-15 | 34 |
neural plate | 6.08e-14 | 82 |
presumptive neural plate | 6.08e-14 | 82 |
cerebral hemisphere | 7.26e-14 | 32 |
regional part of telencephalon | 1.00e-13 | 32 |
regional part of cerebral cortex | 2.69e-13 | 22 |
central nervous system | 4.37e-13 | 81 |
neurectoderm | 2.06e-12 | 86 |
neocortex | 2.94e-12 | 20 |
nervous system | 1.11e-10 | 89 |
cerebral cortex | 4.52e-10 | 25 |
pallium | 4.52e-10 | 25 |
pre-chordal neural plate | 2.86e-09 | 61 |
ecto-epithelium | 6.44e-08 | 104 |
structure with developmental contribution from neural crest | 7.04e-08 | 132 |